SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    938601 9ayi:A (1.89) BS01 NAD N/A GO:0004470 ... P23368 41088330
    938602 9ayi:A (1.89) BS02 NAD N/A GO:0004470 ... P23368 41088330
    938603 9ayi:A (1.89) BS03 NAD N/A GO:0004470 ... P23368 41088330
    938604 9ayi:B (1.89) BS01 NAD N/A GO:0004470 ... P23368 41088330
    938605 9ayi:B (1.89) BS02 NAD N/A GO:0004470 ... P23368 41088330
    938606 9ayi:B (1.89) BS03 NAD N/A GO:0004470 ... P23368 41088330
    938607 9ayi:C (1.89) BS01 NAD N/A GO:0004470 ... P23368 41088330
    938608 9ayi:C (1.89) BS02 NAD N/A GO:0004470 ... P23368 41088330
    938609 9ayi:C (1.89) BS03 NAD N/A GO:0004470 ... P23368 41088330
    938610 9ayi:D (1.89) BS01 NAD N/A GO:0004470 ... P23368 41088330
    938611 9ayi:D (1.89) BS02 NAD N/A GO:0004470 ... P23368 41088330
    938612 9ayi:D (1.89) BS03 NAD N/A GO:0004470 ... P23368 41088330
    938613 9ayj:A (3.2) BS01 A1AHI ? GO:0005216 ... O95180 38605177
    938614 9ayj:A (3.2) BS02 CA ? GO:0005216 ... O95180 38605177
    938615 9ayj:A (3.2) BS03 LPE ? GO:0005216 ... O95180 38605177
    938616 9ayj:A (3.2) BS04 Y01 ? GO:0005216 ... O95180 38605177
    938617 9ayj:A (3.2) BS05 JL3 ? GO:0005216 ... O95180 38605177
    938618 9ayj:A (3.2) BS06 Y01 ? GO:0005216 ... O95180 38605177
    938619 9ayj:A (3.2) BS07 JL3 ? GO:0005216 ... O95180 38605177
    938620 9ayj:A (3.2) BS08 JL3 ? GO:0005216 ... O95180 38605177
    938621 9ayj:A (3.2) BS09 JL3 ? GO:0005216 ... O95180 38605177
    938622 9ayj:A (3.2) BS10 Y01 ? GO:0005216 ... O95180 38605177
    938623 9ayj:A (3.2) BS11 Y01 ? GO:0005216 ... O95180 38605177
    938624 9ayk:A (3.0) BS01 A1AHJ ? GO:0005216 ... O95180 38605177
    938625 9ayk:A (3.0) BS02 CA ? GO:0005216 ... O95180 38605177
    938626 9ayk:A (3.0) BS03 LPE ? GO:0005216 ... O95180 38605177
    938627 9ayk:A (3.0) BS04 Y01 ? GO:0005216 ... O95180 38605177
    938628 9ayk:A (3.0) BS05 JL3 ? GO:0005216 ... O95180 38605177
    938629 9ayk:A (3.0) BS06 Y01 ? GO:0005216 ... O95180 38605177
    938630 9ayk:A (3.0) BS07 JL3 ? GO:0005216 ... O95180 38605177
    938631 9ayk:A (3.0) BS08 JL3 ? GO:0005216 ... O95180 38605177
    938632 9ayk:A (3.0) BS09 JL3 ? GO:0005216 ... O95180 38605177
    938633 9ayk:A (3.0) BS10 Y01 ? GO:0005216 ... O95180 38605177
    938634 9ayk:A (3.0) BS11 Y01 ? GO:0005216 ... O95180 38605177
    938635 9ayl:A (2.8) BS01 A1AHK ? GO:0005216 ... O95180 38605177
    938636 9ayl:A (2.8) BS02 CA ? GO:0005216 ... O95180 38605177
    938637 9ayl:A (2.8) BS03 LPE ? GO:0005216 ... O95180 38605177
    938638 9ayl:A (2.8) BS04 Y01 ? GO:0005216 ... O95180 38605177
    938639 9ayl:A (2.8) BS05 JL3 ? GO:0005216 ... O95180 38605177
    938640 9ayl:A (2.8) BS06 Y01 ? GO:0005216 ... O95180 38605177
    938641 9ayl:A (2.8) BS07 JL3 ? GO:0005216 ... O95180 38605177
    938642 9ayl:A (2.8) BS08 JL3 ? GO:0005216 ... O95180 38605177
    938643 9ayl:A (2.8) BS09 JL3 ? GO:0005216 ... O95180 38605177
    938644 9ayl:A (2.8) BS10 Y01 ? GO:0005216 ... O95180 38605177
    938645 9ayl:A (2.8) BS11 Y01 ? GO:0005216 ... O95180 38605177
    938646 9aym:A (3.29) BS01 A1AHN N/A GO:0000049 ... G0S273 38585770
    938647 9aym:B (3.29) BS01 A1AHN N/A GO:0000049 ... G0S273 38585770
    938648 9ayn:A (0.97) BS01 MG N/A GO:0006508 ... P9WPC1 39626090
    938649 9ayn:B (0.97) BS01 MG N/A GO:0006508 ... P9WPC1 39626090
    938650 9ayo:A (1.75) BS01 PHE N/A GO:0006508 ... P9WPC1 39626090
    938651 9ayo:A (1.75) BS02 ALA N/A GO:0006508 ... P9WPC1 39626090
    938652 9ayo:A (1.75) BS03 MG N/A GO:0006508 ... P9WPC1 39626090
    938653 9ayo:B (1.75) BS01 PHE N/A GO:0006508 ... P9WPC1 39626090
    938654 9ayo:B (1.75) BS02 ALA N/A GO:0006508 ... P9WPC1 39626090
    938655 9ayo:B (1.75) BS03 MG N/A GO:0006508 ... P9WPC1 39626090
    938656 9ayp:A (1.99) BS01 MG N/A GO:0006508 ... P9WPC1 39626090
    938657 9ayp:B (1.99) BS01 CO N/A GO:0006508 ... P9WPC1 39626090
    938658 9ayp:B (1.99) BS02 CO N/A GO:0006508 ... P9WPC1 39626090
    938659 9ayq:A (2.9) BS01 ADP N/A GO:0005524 ... P51531 N/A
    938660 9ayq:A (2.9) BS02 A1AHQ N/A GO:0005524 ... P51531 N/A
    938661 9ayq:B (2.9) BS01 ADP N/A GO:0005524 ... P51531 N/A
    938662 9ayq:B (2.9) BS02 A1AHQ N/A GO:0005524 ... P51531 N/A
    938663 9ayt:D (2.1) BS01 CO N/A N/A A0A023DFE8 39328773
    938664 9ayt:D (2.1) BS02 FE N/A N/A A0A023DFE8 39328773
    938665 9ayt:D (2.1) BS03 HL6 N/A N/A A0A023DFE8 39328773
    938666 9ayt:P (2.1) BS01 CO N/A N/A A0A023DFE8 39328773
    938667 9ayt:P (2.1) BS02 FE N/A N/A A0A023DFE8 39328773
    938668 9ayt:P (2.1) BS03 HL6 N/A N/A A0A023DFE8 39328773
    938669 9ayu:A (2.0) BS01 ZN N/A N/A P0DTR5 N/A
    938670 9ayu:A (2.0) BS02 MN N/A N/A P0DTR5 N/A
    938671 9ayu:B (2.0) BS01 ZN N/A N/A P0DTR5 N/A
    938672 9ayu:B (2.0) BS02 MN N/A N/A P0DTR5 N/A
    938673 9ayu:C (2.0) BS01 ZN N/A N/A P0DTR5 N/A
    938674 9ayu:C (2.0) BS02 MN N/A N/A P0DTR5 N/A
    938675 9ayu:D (2.0) BS01 ZN N/A N/A P0DTR5 N/A
    938676 9ayu:D (2.0) BS02 MN N/A N/A P0DTR5 N/A
    938677 9ayu:E (2.0) BS01 ZN N/A N/A P0DTR5 N/A
    938678 9ayu:E (2.0) BS02 MN N/A N/A P0DTR5 N/A
    938679 9ayz:A (2.24) BS01 HEM N/A GO:0004601 ... P69905 39920120
    938680 9ayz:B (2.24) BS01 HEM N/A GO:0004601 ... P68871 39920120
    938681 9ayz:C (2.24) BS01 HEM N/A GO:0004601 ... P69905 39920120
    938682 9ayz:D (2.24) BS01 HEM N/A GO:0004601 ... P68871 39920120
    938683 9ayz:E (2.24) BS01 HEM N/A GO:0004601 ... P69905 39920120
    938684 9ayz:F (2.24) BS01 HEM N/A GO:0004601 ... P68871 39920120
    938685 9ayz:G (2.24) BS01 HEM N/A GO:0004601 ... P69905 39920120
    938686 9ayz:H (2.24) BS01 HEM N/A GO:0004601 ... P68871 39920120
    938687 9az0:A (1.65) BS01 HEM N/A GO:0004601 ... Q2J9T9 40145573
    938688 9az0:A (1.65) BS02 OXY N/A GO:0004601 ... Q2J9T9 40145573
    938689 9az1:A (2.3) BS01 HEM N/A GO:0004325 ... A0A089YV40 40145573
    938690 9az1:A (2.3) BS02 OXY N/A GO:0004325 ... A0A089YV40 40145573
    938691 9az2:A (2.52) BS01 HEM N/A GO:0004325 ... Q4KBM1 40145573
    938692 9az2:A (2.52) BS02 OXY N/A GO:0004325 ... Q4KBM1 40145573
    938693 9az2:B (2.52) BS01 HEM N/A GO:0004325 ... Q4KBM1 40145573
    938694 9az2:B (2.52) BS02 OXY N/A GO:0004325 ... Q4KBM1 40145573
    938695 9az2:C (2.52) BS01 HEM N/A GO:0004325 ... Q4KBM1 40145573
    938696 9az2:C (2.52) BS02 OXY N/A GO:0004325 ... Q4KBM1 40145573
    938697 9az2:D (2.52) BS01 HEM N/A GO:0004325 ... Q4KBM1 40145573
    938698 9az2:D (2.52) BS02 OXY N/A GO:0004325 ... Q4KBM1 40145573
    938699 9az2:E (2.52) BS01 HEM N/A GO:0004325 ... Q4KBM1 40145573
    938700 9az2:E (2.52) BS02 OXY N/A GO:0004325 ... Q4KBM1 40145573
    938701 9az2:F (2.52) BS01 HEM N/A GO:0004325 ... Q4KBM1 40145573
    938702 9az2:F (2.52) BS02 OXY N/A GO:0004325 ... Q4KBM1 40145573
    938703 9az2:G (2.52) BS01 HEM N/A GO:0004325 ... Q4KBM1 40145573
    938704 9az2:G (2.52) BS02 OXY N/A GO:0004325 ... Q4KBM1 40145573
    938705 9az2:H (2.52) BS01 HEM N/A GO:0004325 ... Q4KBM1 40145573
    938706 9az2:H (2.52) BS02 OXY N/A GO:0004325 ... Q4KBM1 40145573
    938707 9az2:I (2.52) BS01 HEM N/A GO:0004325 ... Q4KBM1 40145573
    938708 9az2:I (2.52) BS02 OXY N/A GO:0004325 ... Q4KBM1 40145573
    938709 9az2:J (2.52) BS01 HEM N/A GO:0004325 ... Q4KBM1 40145573
    938710 9az2:J (2.52) BS02 OXY N/A GO:0004325 ... Q4KBM1 40145573
    938711 9az2:K (2.52) BS01 HEM N/A GO:0004325 ... Q4KBM1 40145573
    938712 9az2:K (2.52) BS02 OXY N/A GO:0004325 ... Q4KBM1 40145573
    938713 9az2:L (2.52) BS01 HEM N/A GO:0004325 ... Q4KBM1 40145573
    938714 9az2:L (2.52) BS02 OXY N/A GO:0004325 ... Q4KBM1 40145573
    938715 9az4:A (3.37) BS01 ADP 3.6.4.- GO:0000287 ... P68135 38843827
    938716 9az4:B (3.37) BS01 ADP 3.6.4.- GO:0000287 ... P68135 38843827
    938717 9az4:C (3.37) BS01 ADP 3.6.4.- GO:0000287 ... P68135 38843827
    938718 9az4:D (3.37) BS01 ADP 3.6.4.- GO:0000287 ... P68135 38843827
    938719 9az4:E (3.37) BS01 ADP 3.6.4.- GO:0000287 ... P68135 38843827
    938720 9az4:F (3.37) BS01 ADP 3.6.4.- GO:0000287 ... P68135 38843827
    938721 9az5:A (1.47) BS01 MG N/A GO:0006508 ... P9WPC1 39626090
    938722 9az5:B (1.47) BS01 MG N/A GO:0006508 ... P9WPC1 39626090
    938723 9az6:A (2.98) BS01 ADP N/A GO:0000287 ... P68135 N/A
    938724 9az6:B (2.98) BS01 ADP N/A GO:0000287 ... P68135 N/A
    938725 9az6:C (2.98) BS01 ADP N/A GO:0000287 ... P68135 N/A
    938726 9az6:D (2.98) BS01 ADP N/A GO:0000287 ... P68135 N/A
    938727 9az6:E (2.98) BS01 ADP N/A GO:0000287 ... P68135 N/A
    938728 9az7:A (2.0) BS01 CL ? GO:0006355 ... P16113 38595979
    938729 9az8:A (1.95) BS01 A1AIN N/A GO:0003824 ... Q84HF5 N/A
    938730 9az8:A (1.95) BS02 FAD N/A GO:0003824 ... Q84HF5 N/A
    938731 9az8:B (1.95) BS01 A1AIN N/A GO:0003824 ... Q84HF5 N/A
    938732 9az8:B (1.95) BS02 FAD N/A GO:0003824 ... Q84HF5 N/A
    938733 9aza:A (2.84) BS01 PLP N/A N/A A0A0A2J6G6 39001849
    938734 9azb:A (2.9) BS01 PLP N/A N/A A0A0A2J6G6 39001849
    938735 9azc:CF (2.19) BS01 rna N/A GO:0000049 ... P68104 N/A
    938736 9azc:CF (2.19) BS02 rna N/A GO:0000049 ... P68104 N/A
    938737 9azc:CI (2.19) BS01 rna N/A N/A N/A N/A
    938738 9azc:LA (2.19) BS01 rna N/A GO:0002181 ... P62917 N/A
    938739 9azc:LA (2.19) BS02 rna N/A GO:0002181 ... P62917 N/A
    938740 9azc:LA (2.19) BS03 MG N/A GO:0002181 ... P62917 N/A
    938741 9azc:LB (2.19) BS01 rna N/A GO:0002181 ... P39023 N/A
    938742 9azc:LC (2.19) BS01 rna N/A GO:0003735 ... P36578 N/A
    938743 9azc:LC (2.19) BS02 rna N/A GO:0003735 ... P36578 N/A
    938744 9azc:LD (2.19) BS01 rna N/A GO:0000027 ... P46777 N/A
    938745 9azc:LD (2.19) BS02 rna N/A GO:0000027 ... P46777 N/A
    938746 9azc:LE (2.19) BS01 rna N/A GO:0003735 ... Q02878 N/A
    938747 9azc:LF (2.19) BS01 rna N/A GO:0000463 ... P18124 N/A
    938748 9azc:LF (2.19) BS02 rna N/A GO:0000463 ... P18124 N/A
    938749 9azc:LG (2.19) BS01 rna N/A GO:0000470 ... P62424 N/A
    938750 9azc:LG (2.19) BS02 rna N/A GO:0000470 ... P62424 N/A
    938751 9azc:LH (2.19) BS01 rna N/A GO:0002181 ... P32969 N/A
    938752 9azc:LI (2.19) BS01 rna N/A GO:0000027 ... Q96L21 N/A
    938753 9azc:LI (2.19) BS02 rna N/A GO:0000027 ... Q96L21 N/A
    938754 9azc:LJ (2.19) BS01 rna N/A GO:0000027 ... P62913 N/A
    938755 9azc:LJ (2.19) BS02 rna N/A GO:0000027 ... P62913 N/A
    938756 9azc:LJ (2.19) BS03 rna N/A GO:0000027 ... P62913 N/A
    938757 9azc:LL (2.19) BS01 rna N/A GO:0002181 ... P26373 N/A
    938758 9azc:LL (2.19) BS02 rna N/A GO:0002181 ... P26373 N/A
    938759 9azc:LM (2.19) BS01 rna N/A GO:0003723 ... P50914 N/A
    938760 9azc:LN (2.19) BS01 rna N/A GO:0002181 ... P61313 N/A
    938761 9azc:LN (2.19) BS02 rna N/A GO:0002181 ... P61313 N/A
    938762 9azc:LO (2.19) BS01 rna N/A GO:0002181 ... P40429 N/A
    938763 9azc:LP (2.19) BS01 rna N/A GO:0003735 ... P18621 N/A
    938764 9azc:LP (2.19) BS02 rna N/A GO:0003735 ... P18621 N/A
    938765 9azc:LQ (2.19) BS01 rna N/A GO:0002181 ... Q07020 N/A
    938766 9azc:LR (2.19) BS01 rna N/A GO:0002181 ... P84098 N/A
    938767 9azc:LR (2.19) BS02 rna N/A GO:0002181 ... P84098 N/A
    938768 9azc:LS (2.19) BS01 rna N/A GO:0002181 ... Q02543 N/A
    938769 9azc:LS (2.19) BS02 rna N/A GO:0002181 ... Q02543 N/A
    938770 9azc:LT (2.19) BS01 rna N/A GO:0001650 ... P46778 N/A
    938771 9azc:LT (2.19) BS02 rna N/A GO:0001650 ... P46778 N/A
    938772 9azc:LU (2.19) BS01 rna N/A GO:0003735 ... P35268 N/A
    938773 9azc:LV (2.19) BS01 rna N/A GO:0000122 ... P62829 N/A
    938774 9azc:LV (2.19) BS02 rna N/A GO:0000122 ... P62829 N/A
    938775 9azc:LW (2.19) BS01 rna N/A GO:0003735 ... P83731 N/A
    938776 9azc:LW (2.19) BS02 rna N/A GO:0003735 ... P83731 N/A
    938777 9azc:LX (2.19) BS01 rna N/A GO:0003735 ... P62750 N/A
    938778 9azc:LX (2.19) BS02 rna N/A GO:0003735 ... P62750 N/A
    938779 9azc:LY (2.19) BS01 rna N/A GO:0002181 ... P61254 N/A
    938780 9azc:LY (2.19) BS02 rna N/A GO:0002181 ... P61254 N/A
    938781 9azc:LZ (2.19) BS01 rna N/A GO:0002181 ... P61353 N/A
    938782 9azc:La (2.19) BS01 rna N/A GO:0002181 ... P46776 N/A
    938783 9azc:Lb (2.19) BS01 rna N/A GO:0003735 ... P47914 N/A
    938784 9azc:Lc (2.19) BS01 rna N/A GO:0003723 ... P62888 N/A
    938785 9azc:Ld (2.19) BS01 rna N/A GO:0003735 ... P62899 N/A
    938786 9azc:Le (2.19) BS01 rna N/A GO:0002181 ... P62910 N/A
    938787 9azc:Le (2.19) BS02 MG N/A GO:0002181 ... P62910 N/A
    938788 9azc:Lf (2.19) BS01 rna N/A GO:0002181 ... P18077 N/A
    938789 9azc:Lg (2.19) BS01 rna N/A GO:0002181 ... P49207 N/A
    938790 9azc:Lg (2.19) BS02 MG N/A GO:0002181 ... P49207 N/A
    938791 9azc:Lg (2.19) BS03 ZN N/A GO:0002181 ... P49207 N/A
    938792 9azc:Lh (2.19) BS01 rna N/A GO:0000463 ... P42766 N/A
    938793 9azc:Lh (2.19) BS02 rna N/A GO:0000463 ... P42766 N/A
    938794 9azc:Li (2.19) BS01 rna N/A GO:0002181 ... Q9Y3U8 N/A
    938795 9azc:Lj (2.19) BS01 rna N/A GO:0003735 ... P61927 N/A
    938796 9azc:Lj (2.19) BS02 rna N/A GO:0003735 ... P61927 N/A
    938797 9azc:Lj (2.19) BS03 ZN N/A GO:0003735 ... P61927 N/A
    938798 9azc:Lk (2.19) BS01 rna N/A GO:0002181 ... P63173 N/A
    938799 9azc:Ll (2.19) BS01 rna N/A GO:0002181 ... P62891 N/A
    938800 9azc:Ll (2.19) BS02 rna N/A GO:0002181 ... P62891 N/A

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).