SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    939001 9guv:N (3.0) BS01 rna N/A GO:0000049 ... P0A7S9 39607923
    939002 9guv:O (3.0) BS01 rna N/A GO:0000028 ... P0AG59 39607923
    939003 9guv:P (3.0) BS01 rna N/A GO:0000028 ... P0ADZ4 39607923
    939004 9guv:Q (3.0) BS01 rna N/A GO:0000028 ... P0A7T3 39607923
    939005 9guv:R (3.0) BS01 rna N/A GO:0000028 ... P0AG63 39607923
    939006 9guv:S (3.0) BS01 rna N/A GO:0002181 ... P0A7T7 39607923
    939007 9guv:T (3.0) BS01 rna N/A GO:0000028 ... P0A7U3 39607923
    939008 9guv:U (3.0) BS01 rna N/A GO:0000028 ... P0A7U7 39607923
    939009 9guv:V (3.0) BS01 rna N/A GO:0000028 ... P68679 39607923
    939010 9guv:V (3.0) BS02 rna N/A GO:0000028 ... P68679 39607923
    939011 9guw:3 (3.1) BS01 rna N/A GO:0000345 ... P0A8V2 39607923
    939012 9guw:3 (3.1) BS02 dna N/A GO:0000345 ... P0A8V2 39607923
    939013 9guw:3 (3.1) BS03 dna N/A GO:0000345 ... P0A8V2 39607923
    939014 9guw:4 (3.1) BS01 rna N/A GO:0000287 ... P0A8T7 39607923
    939015 9guw:4 (3.1) BS02 dna N/A GO:0000287 ... P0A8T7 39607923
    939016 9guw:4 (3.1) BS03 dna N/A GO:0000287 ... P0A8T7 39607923
    939017 9guw:4 (3.1) BS04 ZN N/A GO:0000287 ... P0A8T7 39607923
    939018 9guw:4 (3.1) BS05 ZN N/A GO:0000287 ... P0A8T7 39607923
    939019 9guw:C (3.1) BS01 rna N/A GO:0000028 ... P0A7V0 39607923
    939020 9guw:D (3.1) BS01 rna N/A GO:0000028 ... P0A7V3 39607923
    939021 9guw:E (3.1) BS01 rna N/A GO:0003735 ... P0A7V8 39607923
    939022 9guw:F (3.1) BS01 rna N/A GO:0000028 ... P0A7W1 39607923
    939023 9guw:G (3.1) BS01 rna N/A GO:0003735 ... P02358 39607923
    939024 9guw:H (3.1) BS01 rna N/A N/A P02359 39607923
    939025 9guw:I (3.1) BS01 rna N/A GO:0000028 ... P0A7W7 39607923
    939026 9guw:J (3.1) BS01 rna N/A GO:0000049 ... P0A7X3 39607923
    939027 9guw:K (3.1) BS01 rna N/A GO:0000049 ... P0A7R5 39607923
    939028 9guw:L (3.1) BS01 rna N/A GO:0002181 ... P0A7R9 39607923
    939029 9guw:M (3.1) BS01 rna N/A GO:0000049 ... P0A7S3 39607923
    939030 9guw:N (3.1) BS01 rna N/A GO:0000049 ... P0A7S9 39607923
    939031 9guw:O (3.1) BS01 rna N/A GO:0000028 ... P0AG59 39607923
    939032 9guw:P (3.1) BS01 rna N/A GO:0000028 ... P0ADZ4 39607923
    939033 9guw:Q (3.1) BS01 rna N/A GO:0000028 ... P0A7T3 39607923
    939034 9guw:R (3.1) BS01 rna N/A GO:0000028 ... P0AG63 39607923
    939035 9guw:S (3.1) BS01 rna N/A GO:0002181 ... P0A7T7 39607923
    939036 9guw:T (3.1) BS01 rna N/A GO:0000028 ... P0A7U3 39607923
    939037 9guw:U (3.1) BS01 rna N/A GO:0000028 ... P0A7U7 39607923
    939038 9guw:Z (3.1) BS01 dna N/A GO:0005515 ... P0AFG0 39607923
    939039 9guw:Z (3.1) BS02 dna N/A GO:0005515 ... P0AFG0 39607923
    939040 9gux:3 (3.3) BS01 rna N/A GO:0000345 ... P0A8V2 39607923
    939041 9gux:3 (3.3) BS02 dna N/A GO:0000345 ... P0A8V2 39607923
    939042 9gux:3 (3.3) BS03 dna N/A GO:0000345 ... P0A8V2 39607923
    939043 9gux:4 (3.3) BS01 dna N/A GO:0000287 ... P0A8T7 39607923
    939044 9gux:4 (3.3) BS02 dna N/A GO:0000287 ... P0A8T7 39607923
    939045 9gux:4 (3.3) BS03 ZN N/A GO:0000287 ... P0A8T7 39607923
    939046 9gux:4 (3.3) BS04 ZN N/A GO:0000287 ... P0A8T7 39607923
    939047 9gux:B (3.3) BS01 rna N/A GO:0000028 ... P0AG67 39607923
    939048 9gux:C (3.3) BS01 rna N/A GO:0000028 ... P0A7V0 39607923
    939049 9gux:D (3.3) BS01 rna N/A GO:0000028 ... P0A7V3 39607923
    939050 9gux:E (3.3) BS01 rna N/A GO:0003735 ... P0A7V8 39607923
    939051 9gux:F (3.3) BS01 rna N/A GO:0000028 ... P0A7W1 39607923
    939052 9gux:G (3.3) BS01 rna N/A GO:0003735 ... P02358 39607923
    939053 9gux:H (3.3) BS01 rna N/A N/A P02359 39607923
    939054 9gux:I (3.3) BS01 rna N/A GO:0000028 ... P0A7W7 39607923
    939055 9gux:J (3.3) BS01 rna N/A GO:0000049 ... P0A7X3 39607923
    939056 9gux:K (3.3) BS01 rna N/A GO:0000049 ... P0A7R5 39607923
    939057 9gux:L (3.3) BS01 rna N/A GO:0002181 ... P0A7R9 39607923
    939058 9gux:M (3.3) BS01 rna N/A GO:0000049 ... P0A7S3 39607923
    939059 9gux:N (3.3) BS01 rna N/A GO:0000049 ... P0A7S9 39607923
    939060 9gux:O (3.3) BS01 rna N/A GO:0000028 ... P0AG59 39607923
    939061 9gux:P (3.3) BS01 rna N/A GO:0000028 ... P0ADZ4 39607923
    939062 9gux:Q (3.3) BS01 rna N/A GO:0000028 ... P0A7T3 39607923
    939063 9gux:R (3.3) BS01 rna N/A GO:0000028 ... P0AG63 39607923
    939064 9gux:S (3.3) BS01 rna N/A GO:0002181 ... P0A7T7 39607923
    939065 9gux:T (3.3) BS01 rna N/A GO:0000028 ... P0A7U3 39607923
    939066 9gux:U (3.3) BS01 rna N/A GO:0000028 ... P0A7U7 39607923
    939067 9gux:V (3.3) BS01 rna N/A GO:0000028 ... P68679 39607923
    939068 9gux:Z (3.3) BS01 dna N/A GO:0005515 ... P0AFG0 39607923
    939069 9guy:B (2.1) BS01 A1IOL N/A N/A P0DTD1 N/A
    939070 9guy:B (2.1) BS02 SAM N/A N/A P0DTD1 N/A
    939071 9guy:C (2.1) BS01 ZN N/A N/A P0DTD1 N/A
    939072 9guy:C (2.1) BS02 ZN N/A N/A P0DTD1 N/A
    939073 9gv2:A (2.56) BS01 A1IPK N/A N/A P0DTD1 39813204
    939074 9gv2:B (2.56) BS01 A1IPK N/A N/A P0DTD1 39813204
    939075 9gva:AAA (2.4) BS01 ZN N/A N/A Q7MV79 39647519
    939076 9gva:BBB (2.4) BS01 ZN N/A N/A Q7MV79 39647519
    939077 9gva:CCC (2.4) BS01 ZN N/A N/A Q7MV79 39647519
    939078 9gvj:A (2.91) BS01 CA N/A N/A P98088 N/A
    939079 9gvj:A (2.91) BS02 CA N/A N/A P98088 N/A
    939080 9gvj:A (2.91) BS03 CU N/A N/A P98088 N/A
    939081 9gvj:B (2.91) BS01 CA N/A N/A P98088 N/A
    939082 9gvj:B (2.91) BS02 CA N/A N/A P98088 N/A
    939083 9gvj:B (2.91) BS03 CU N/A N/A P98088 N/A
    939084 9gvj:C (2.91) BS01 CA N/A N/A P98088 N/A
    939085 9gvj:D (2.91) BS01 CA N/A N/A P98088 N/A
    939086 9gvk:D (3.5) BS01 MG N/A N/A P75957 39725716
    939087 9gvk:D (3.5) BS02 ATP N/A N/A P75957 39725716
    939088 9gvk:D (3.5) BS03 ATP N/A N/A P75957 39725716
    939089 9gvk:F (3.5) BS01 ATP N/A N/A P75957 39725716
    939090 9gvk:F (3.5) BS02 ATP N/A N/A P75957 39725716
    939091 9gvk:F (3.5) BS03 MG N/A N/A P75957 39725716
    939092 9gvq:A (3.9) BS01 CA N/A N/A P98088 N/A
    939093 9gvq:A (3.9) BS02 CA N/A N/A P98088 N/A
    939094 9gvq:A (3.9) BS03 CU N/A N/A P98088 N/A
    939095 9gvq:A (3.9) BS04 CA N/A N/A P98088 N/A
    939096 9gvq:B (3.9) BS01 CA N/A N/A P98088 N/A
    939097 9gvq:B (3.9) BS02 CA N/A N/A P98088 N/A
    939098 9gvq:B (3.9) BS03 CU N/A N/A P98088 N/A
    939099 9gvq:B (3.9) BS04 CA N/A N/A P98088 N/A
    939100 9gvq:C (3.9) BS01 CA N/A N/A P98088 N/A
    939101 9gvq:C (3.9) BS02 CA N/A N/A P98088 N/A
    939102 9gvq:C (3.9) BS03 CU N/A N/A P98088 N/A
    939103 9gvq:C (3.9) BS04 CA N/A N/A P98088 N/A
    939104 9gvq:D (3.9) BS01 CA N/A N/A P98088 N/A
    939105 9gvq:D (3.9) BS02 CA N/A N/A P98088 N/A
    939106 9gvq:D (3.9) BS03 CU N/A N/A P98088 N/A
    939107 9gvq:D (3.9) BS04 CA N/A N/A P98088 N/A
    939108 9gwo:A (2.0) BS01 A1IQS N/A N/A P0DTD1 N/A
    939109 9gwo:A (2.0) BS02 SAM N/A N/A P0DTD1 N/A
    939110 9gwo:B (2.0) BS01 ZN N/A N/A P0DTD1 N/A
    939111 9gwo:B (2.0) BS02 ZN N/A N/A P0DTD1 N/A
    939112 9gwt:P (2.89) BS01 MAN N/A N/A Q8TD46 39402718
    939113 9gwt:P (2.89) BS02 MAN N/A N/A Q8TD46 39402718
    939114 9gwv:A (1.9) BS01 NAD N/A N/A P0DOV5 39840830
    939115 9gwv:B (1.9) BS01 NAD N/A N/A P0DOV5 39840830
    939116 9gww:A (1.9) BS01 YZT N/A N/A P0DOV5 39840830
    939117 9gxa:A (4.01) BS01 dna N/A N/A P49450 39803555
    939118 9gxa:A (4.01) BS02 dna N/A N/A P49450 39803555
    939119 9gxa:B (4.01) BS01 dna N/A N/A P62805 39803555
    939120 9gxa:B (4.01) BS02 dna N/A N/A P62805 39803555
    939121 9gxa:C (4.01) BS01 dna N/A N/A P49450 39803555
    939122 9gxa:C (4.01) BS02 dna N/A N/A P49450 39803555
    939123 9gxa:D (4.01) BS01 dna N/A N/A P62805 39803555
    939124 9gxa:D (4.01) BS02 dna N/A N/A P62805 39803555
    939125 9gxa:E (4.01) BS01 dna N/A N/A P49450 39803555
    939126 9gxa:E (4.01) BS02 dna N/A N/A P49450 39803555
    939127 9gxa:F (4.01) BS01 dna N/A N/A P62805 39803555
    939128 9gxa:F (4.01) BS02 dna N/A N/A P62805 39803555
    939129 9gxa:G (4.01) BS01 dna N/A N/A P49450 39803555
    939130 9gxa:G (4.01) BS02 dna N/A N/A P49450 39803555
    939131 9gxa:H (4.01) BS01 dna N/A N/A P62805 39803555
    939132 9gxa:H (4.01) BS02 dna N/A N/A P62805 39803555
    939133 9gxb:A (1.9) BS01 FAD N/A GO:0000166 ... A0A0H3ASL8 39522858
    939134 9gxc:A (2.2) BS01 FAD N/A GO:0000166 ... A0A0H3ASL8 39522858
    939135 9gy0:A (3.42) BS01 dna N/A N/A Q9Y2M0 N/A
    939136 9gy0:A (3.42) BS02 dna N/A N/A Q9Y2M0 N/A
    939137 9gy0:A (3.42) BS03 dna N/A N/A Q9Y2M0 N/A
    939138 9gy0:A (3.42) BS04 CA N/A N/A Q9Y2M0 N/A
    939139 9gy8:A (2.2) BS01 peptide N/A N/A Q9PTN2 39610329
    939140 9gy8:A (2.2) BS02 A1IQM N/A N/A Q9PTN2 39610329
    939141 9gya:A (1.85) BS01 peptide N/A N/A Q9PTN2 39610329
    939142 9gya:A (1.85) BS02 A1IQQ N/A N/A Q9PTN2 39610329
    939143 9gyb:A (2.9) BS01 SF4 N/A N/A P31896 39912726
    939144 9gyb:A (2.9) BS02 RQM N/A N/A P31896 39912726
    939145 9gyb:A (2.9) BS03 SF4 N/A N/A P31896 39912726
    939146 9gyb:B (2.9) BS01 SF4 N/A N/A P31896 39912726
    939147 9gyb:B (2.9) BS02 SF4 N/A N/A P31896 39912726
    939148 9gyb:B (2.9) BS03 RQM N/A N/A P31896 39912726
    939149 9gyb:C (2.9) BS01 SF4 N/A N/A P31896 39912726
    939150 9gyb:C (2.9) BS02 SF4 N/A N/A P31896 39912726
    939151 9gyb:C (2.9) BS03 RQM N/A N/A P31896 39912726
    939152 9gyb:D (2.9) BS01 SF4 N/A N/A P31896 39912726
    939153 9gyb:D (2.9) BS02 SF4 N/A N/A P31896 39912726
    939154 9gyb:D (2.9) BS03 RQM N/A N/A P31896 39912726
    939155 9gyb:E (2.9) BS01 SF4 N/A N/A P31896 39912726
    939156 9gyb:E (2.9) BS02 SF4 N/A N/A P31896 39912726
    939157 9gyb:E (2.9) BS03 RQM N/A N/A P31896 39912726
    939158 9gyb:F (2.9) BS01 SF4 N/A N/A P31896 39912726
    939159 9gyb:F (2.9) BS02 SF4 N/A N/A P31896 39912726
    939160 9gyb:F (2.9) BS03 RQM N/A N/A P31896 39912726
    939161 9gyc:A (2.2) BS01 peptide N/A N/A Q9PTN2 39610329
    939162 9gyc:A (2.2) BS02 A1IQP N/A N/A Q9PTN2 39610329
    939163 9gyj:A (1.9) BS01 peptide N/A N/A Q9PTN2 39610329
    939164 9gyj:A (1.9) BS02 A1IQN N/A N/A Q9PTN2 39610329
    939165 9gyk:A (2.2) BS01 peptide N/A N/A Q9PTN2 39610329
    939166 9gyk:A (2.2) BS02 A1IQO N/A N/A Q9PTN2 39610329
    939167 9gyo:R (2.5) BS01 FWX N/A GO:0004930 ... P0ABE7
    Q8TDU6
    N/A
    939168 9gyo:R (2.5) BS02 CLR N/A GO:0004930 ... P0ABE7
    Q8TDU6
    N/A
    939169 9gyo:R (2.5) BS03 CLR N/A GO:0004930 ... P0ABE7
    Q8TDU6
    N/A
    939170 9gyo:R (2.5) BS04 CLR N/A GO:0004930 ... P0ABE7
    Q8TDU6
    N/A
    939171 9gys:A (1.74) BS01 A1IQW N/A GO:0004519 ... P61823 39551297
    939172 9gys:A (1.74) BS02 A1IQW N/A GO:0004519 ... P61823 39551297
    939173 9gys:B (1.74) BS01 A1IQW N/A GO:0004519 ... P61823 39551297
    939174 9gys:B (1.74) BS02 A1IQW N/A GO:0004519 ... P61823 39551297
    939175 9gzh:A (2.2) BS01 A1IRC N/A N/A P16234 39841084
    939176 9gzj:A (2.34) BS01 A1IRZ N/A GO:0016757 ... A0A0H3GFS8 39746981
    939177 9gzj:A (2.34) BS02 A1IRZ N/A GO:0016757 ... A0A0H3GFS8 39746981
    939178 9gzj:A (2.34) BS03 MG N/A GO:0016757 ... A0A0H3GFS8 39746981
    939179 9gzj:A (2.34) BS04 MG N/A GO:0016757 ... A0A0H3GFS8 39746981
    939180 9gzj:B (2.34) BS01 MG N/A GO:0016757 ... A0A0H3GFS8 39746981
    939181 9gzj:B (2.34) BS02 A1IRZ N/A GO:0016757 ... A0A0H3GFS8 39746981
    939182 9gzj:B (2.34) BS03 MG N/A GO:0016757 ... A0A0H3GFS8 39746981
    939183 9gzk:A (2.52) BS01 A1IR6 N/A GO:0016757 ... A0A0H3GFS8 39746981
    939184 9gzk:A (2.52) BS02 MG N/A GO:0016757 ... A0A0H3GFS8 39746981
    939185 9gzk:A (2.52) BS03 MG N/A GO:0016757 ... A0A0H3GFS8 39746981
    939186 9gzk:B (2.52) BS01 A1IR6 N/A GO:0016757 ... A0A0H3GFS8 39746981
    939187 9gzk:B (2.52) BS02 A1IR6 N/A GO:0016757 ... A0A0H3GFS8 39746981
    939188 9gzk:B (2.52) BS03 MG N/A GO:0016757 ... A0A0H3GFS8 39746981
    939189 9gzk:C (2.52) BS01 A1IR6 N/A GO:0016757 ... A0A0H3GFS8 39746981
    939190 9gzk:C (2.52) BS02 MG N/A GO:0016757 ... A0A0H3GFS8 39746981
    939191 9gzk:C (2.52) BS03 MG N/A GO:0016757 ... A0A0H3GFS8 39746981
    939192 9gzk:D (2.52) BS01 MG N/A GO:0016757 ... A0A0H3GFS8 39746981
    939193 9gzk:D (2.52) BS02 A1IR6 N/A GO:0016757 ... A0A0H3GFS8 39746981
    939194 9gzk:D (2.52) BS03 MG N/A GO:0016757 ... A0A0H3GFS8 39746981
    939195 9gzk:E (2.52) BS01 A1IR6 N/A GO:0016757 ... A0A0H3GFS8 39746981
    939196 9gzk:E (2.52) BS02 MG N/A GO:0016757 ... A0A0H3GFS8 39746981
    939197 9gzk:E (2.52) BS03 MG N/A GO:0016757 ... A0A0H3GFS8 39746981
    939198 9gzk:F (2.52) BS01 MG N/A GO:0016757 ... A0A0H3GFS8 39746981
    939199 9gzk:F (2.52) BS02 A1IR6 N/A GO:0016757 ... A0A0H3GFS8 39746981
    939200 9gzk:F (2.52) BS03 A1IR6 N/A GO:0016757 ... A0A0H3GFS8 39746981

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).