SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    939201 9h1p:A (3.1) BS01 peptide N/A N/A P12493 39574591
    939202 9h1p:C (3.1) BS01 peptide N/A N/A P12493 39574591
    939203 9h1p:E (3.1) BS01 peptide N/A N/A P12493 39574591
    939204 9h1p:G (3.1) BS01 peptide N/A N/A P12493 39574591
    939205 9h1p:I (3.1) BS01 peptide N/A N/A P12493 39574591
    939206 9h1p:K (3.1) BS01 peptide N/A N/A P12493 39574591
    939207 9h1p:M (3.1) BS01 peptide N/A N/A P12493 39574591
    939208 9h1p:O (3.1) BS01 peptide N/A N/A P12493 39574591
    939209 9h1p:Q (3.1) BS01 peptide N/A N/A P12493 39574591
    939210 9h1p:S (3.1) BS01 peptide N/A N/A P12493 39574591
    939211 9h1p:U (3.1) BS01 peptide N/A N/A P12493 39574591
    939212 9h1p:W (3.1) BS01 peptide N/A N/A P12493 39574591
    939213 9h28:A (3.22) BS01 CPL N/A N/A P14336
    P29837
    N/A
    939214 9h28:A (3.22) BS02 CPL N/A N/A P14336
    P29837
    N/A
    939215 9h28:B (3.22) BS01 CPL N/A N/A P14336
    P29837
    N/A
    939216 9h28:C (3.22) BS01 CPL N/A N/A P14336
    P29837
    N/A
    939217 9h3h:A (1.8) BS01 ZN N/A GO:0002009 ... P00918 39572886
    939218 9h3k:D (6.62) BS01 rna N/A N/A P60438 39794318
    939219 9h3k:E (6.62) BS01 rna N/A N/A P60723 39794318
    939220 9h3k:J (6.62) BS01 rna N/A N/A P0AA10 39794318
    939221 9h3k:L (6.62) BS01 rna N/A N/A P02413 39794318
    939222 9h3k:N (6.62) BS01 rna N/A N/A P0AG44 39794318
    939223 9h3k:Q (6.62) BS01 rna N/A N/A P0A7L3 39794318
    939224 9h3k:R (6.62) BS01 rna N/A N/A P0AG48 39794318
    939225 9h3k:U (6.62) BS01 rna N/A N/A P60624 39794318
    939226 9h3l:D (5.84) BS01 rna N/A N/A P60438 39794318
    939227 9h3l:E (5.84) BS01 rna N/A N/A P60723 39794318
    939228 9h3l:G (5.84) BS01 rna N/A N/A P0AG55 39794318
    939229 9h3l:J (5.84) BS01 rna N/A N/A P0AA10 39794318
    939230 9h3l:K (5.84) BS01 rna N/A N/A P0ADY3 39794318
    939231 9h3l:L (5.84) BS01 rna N/A N/A P02413 39794318
    939232 9h3l:N (5.84) BS01 rna N/A N/A P0AG44 39794318
    939233 9h3l:P (5.84) BS01 rna N/A N/A P0A7K6 39794318
    939234 9h3l:Q (5.84) BS01 rna N/A N/A P0A7L3 39794318
    939235 9h3l:R (5.84) BS01 rna N/A N/A P0AG48 39794318
    939236 9h3l:U (5.84) BS01 rna N/A N/A P60624 39794318
    939237 9h3l:Z (5.84) BS01 rna N/A N/A P0AG51 39794318
    939238 9h3m:2 (4.41) BS01 rna N/A N/A P0A7P5 39794318
    939239 9h3m:D (4.41) BS01 rna N/A N/A P60438 39794318
    939240 9h3m:E (4.41) BS01 rna N/A N/A P60723 39794318
    939241 9h3m:J (4.41) BS01 rna N/A N/A P0AA10 39794318
    939242 9h3m:K (4.41) BS01 rna N/A N/A P0ADY3 39794318
    939243 9h3m:L (4.41) BS01 rna N/A N/A P02413 39794318
    939244 9h3m:N (4.41) BS01 rna N/A N/A P0AG44 39794318
    939245 9h3m:P (4.41) BS01 rna N/A N/A P0A7K6 39794318
    939246 9h3m:Q (4.41) BS01 rna N/A N/A P0A7L3 39794318
    939247 9h3m:R (4.41) BS01 rna N/A N/A P0AG48 39794318
    939248 9h3m:T (4.41) BS01 rna N/A N/A P0ADZ0 39794318
    939249 9h3m:U (4.41) BS01 rna N/A N/A P60624 39794318
    939250 9h3m:Y (4.41) BS01 rna N/A N/A P0A7M6 39794318
    939251 9h3n:2 (3.69) BS01 rna N/A N/A P0A7P5 39794318
    939252 9h3n:D (3.69) BS01 rna N/A N/A P60438 39794318
    939253 9h3n:E (3.69) BS01 rna N/A N/A P60723 39794318
    939254 9h3n:J (3.69) BS01 rna N/A N/A P0AA10 39794318
    939255 9h3n:L (3.69) BS01 rna N/A N/A P02413 39794318
    939256 9h3n:N (3.69) BS01 rna N/A N/A P0AG44 39794318
    939257 9h3n:Q (3.69) BS01 rna N/A N/A P0A7L3 39794318
    939258 9h3n:R (3.69) BS01 rna N/A N/A P0AG48 39794318
    939259 9h3n:T (3.69) BS01 rna N/A N/A P0ADZ0 39794318
    939260 9h3n:U (3.69) BS01 rna N/A N/A P60624 39794318
    939261 9h3n:Y (3.69) BS01 rna N/A N/A P0A7M6 39794318
    939262 9h3n:Z (3.69) BS01 rna N/A N/A P0AG51 39794318
    939263 9h3o:2 (4.54) BS01 rna N/A N/A P0A7P5 39794318
    939264 9h3o:4 (4.54) BS01 rna N/A N/A P0A7Q6 39794318
    939265 9h3o:D (4.54) BS01 rna N/A N/A P60438 39794318
    939266 9h3o:E (4.54) BS01 rna N/A N/A P60723 39794318
    939267 9h3o:G (4.54) BS01 rna N/A N/A P0AG55 39794318
    939268 9h3o:J (4.54) BS01 rna N/A N/A P0AA10 39794318
    939269 9h3o:K (4.54) BS01 rna N/A N/A P0ADY3 39794318
    939270 9h3o:L (4.54) BS01 rna N/A N/A P02413 39794318
    939271 9h3o:N (4.54) BS01 rna N/A N/A P0AG44 39794318
    939272 9h3o:P (4.54) BS01 rna N/A N/A P0A7K6 39794318
    939273 9h3o:Q (4.54) BS01 rna N/A N/A P0A7L3 39794318
    939274 9h3o:R (4.54) BS01 rna N/A N/A P0AG48 39794318
    939275 9h3o:T (4.54) BS01 rna N/A N/A P0ADZ0 39794318
    939276 9h3o:U (4.54) BS01 rna N/A N/A P60624 39794318
    939277 9h3o:Y (4.54) BS01 rna N/A N/A P0A7M6 39794318
    939278 9h3o:Z (4.54) BS01 rna N/A N/A P0AG51 39794318
    939279 9h3p:2 (7.06) BS01 rna N/A N/A P0A7P5 39794318
    939280 9h3p:D (7.06) BS01 rna N/A N/A P60438 39794318
    939281 9h3p:E (7.06) BS01 rna N/A N/A P60723 39794318
    939282 9h3p:F (7.06) BS01 rna N/A N/A P62399 39794318
    939283 9h3p:F (7.06) BS02 rna N/A N/A P62399 39794318
    939284 9h3p:G (7.06) BS01 rna N/A N/A P0AG55 39794318
    939285 9h3p:J (7.06) BS01 rna N/A N/A P0AA10 39794318
    939286 9h3p:K (7.06) BS01 rna N/A N/A P0ADY3 39794318
    939287 9h3p:L (7.06) BS01 rna N/A N/A P02413 39794318
    939288 9h3p:N (7.06) BS01 rna N/A N/A P0AG44 39794318
    939289 9h3p:O (7.06) BS01 rna N/A N/A P0C018 39794318
    939290 9h3p:O (7.06) BS02 rna N/A N/A P0C018 39794318
    939291 9h3p:P (7.06) BS01 rna N/A N/A P0A7K6 39794318
    939292 9h3p:Q (7.06) BS01 rna N/A N/A P0A7L3 39794318
    939293 9h3p:R (7.06) BS01 rna N/A N/A P0AG48 39794318
    939294 9h3p:T (7.06) BS01 rna N/A N/A P0ADZ0 39794318
    939295 9h3p:U (7.06) BS01 rna N/A N/A P60624 39794318
    939296 9h3p:V (7.06) BS01 rna N/A N/A P68919 39794318
    939297 9h3p:W (7.06) BS01 rna N/A N/A P0A7L8 39794318
    939298 9h3p:W (7.06) BS02 rna N/A N/A P0A7L8 39794318
    939299 9h3p:X (7.06) BS01 rna N/A N/A P0A7M2 39794318
    939300 9h3p:Y (7.06) BS01 rna N/A N/A P0A7M6 39794318
    939301 9h3p:Z (7.06) BS01 rna N/A N/A P0AG51 39794318
    939302 9h3p:Z (7.06) BS02 rna N/A N/A P0AG51 39794318
    939303 9h3q:2 (4.02) BS01 rna N/A N/A P0A7P5 39794318
    939304 9h3q:4 (4.02) BS01 rna N/A N/A P0A7Q6 39794318
    939305 9h3q:C (4.02) BS01 rna N/A N/A P0A8X0 39794318
    939306 9h3q:D (4.02) BS01 rna N/A N/A P60438 39794318
    939307 9h3q:E (4.02) BS01 rna N/A N/A P60723 39794318
    939308 9h3q:F (4.02) BS01 rna N/A N/A P62399 39794318
    939309 9h3q:F (4.02) BS02 rna N/A N/A P62399 39794318
    939310 9h3q:G (4.02) BS01 rna N/A N/A P0AG55 39794318
    939311 9h3q:H (4.02) BS01 rna N/A N/A P0A7R1 39794318
    939312 9h3q:J (4.02) BS01 rna N/A N/A P0AA10 39794318
    939313 9h3q:L (4.02) BS01 rna N/A N/A P02413 39794318
    939314 9h3q:N (4.02) BS01 rna N/A N/A P0AG44 39794318
    939315 9h3q:O (4.02) BS01 rna N/A N/A P0C018 39794318
    939316 9h3q:O (4.02) BS02 rna N/A N/A P0C018 39794318
    939317 9h3q:Q (4.02) BS01 rna N/A N/A P0A7L3 39794318
    939318 9h3q:R (4.02) BS01 rna N/A N/A P0AG48 39794318
    939319 9h3q:T (4.02) BS01 rna N/A N/A P0ADZ0 39794318
    939320 9h3q:U (4.02) BS01 rna N/A N/A P60624 39794318
    939321 9h3q:V (4.02) BS01 rna N/A N/A P68919 39794318
    939322 9h3q:W (4.02) BS01 rna N/A N/A P0A7L8 39794318
    939323 9h3q:W (4.02) BS02 rna N/A N/A P0A7L8 39794318
    939324 9h3q:X (4.02) BS01 rna N/A N/A P0A7M2 39794318
    939325 9h3q:Y (4.02) BS01 rna N/A N/A P0A7M6 39794318
    939326 9h3q:Z (4.02) BS01 rna N/A N/A P0AG51 39794318
    939327 9h3q:Z (4.02) BS02 rna N/A N/A P0AG51 39794318
    939328 9h3r:2 (4.12) BS01 rna N/A N/A P0A7P5 39794318
    939329 9h3r:4 (4.12) BS01 rna N/A N/A P0A7Q6 39794318
    939330 9h3r:C (4.12) BS01 rna N/A N/A P0A8X0 39794318
    939331 9h3r:D (4.12) BS01 rna N/A N/A P60438 39794318
    939332 9h3r:E (4.12) BS01 rna N/A N/A P60723 39794318
    939333 9h3r:F (4.12) BS01 rna N/A N/A P62399 39794318
    939334 9h3r:F (4.12) BS02 rna N/A N/A P62399 39794318
    939335 9h3r:G (4.12) BS01 rna N/A N/A P0AG55 39794318
    939336 9h3r:H (4.12) BS01 rna N/A N/A P0A7R1 39794318
    939337 9h3r:J (4.12) BS01 rna N/A N/A P0AA10 39794318
    939338 9h3r:K (4.12) BS01 rna N/A N/A P0ADY3 39794318
    939339 9h3r:L (4.12) BS01 rna N/A N/A P02413 39794318
    939340 9h3r:N (4.12) BS01 rna N/A N/A P0AG44 39794318
    939341 9h3r:O (4.12) BS01 rna N/A N/A P0C018 39794318
    939342 9h3r:O (4.12) BS02 rna N/A N/A P0C018 39794318
    939343 9h3r:P (4.12) BS01 rna N/A N/A P0A7K6 39794318
    939344 9h3r:Q (4.12) BS01 rna N/A N/A P0A7L3 39794318
    939345 9h3r:R (4.12) BS01 rna N/A N/A P0AG48 39794318
    939346 9h3r:T (4.12) BS01 rna N/A N/A P0ADZ0 39794318
    939347 9h3r:U (4.12) BS01 rna N/A N/A P60624 39794318
    939348 9h3r:V (4.12) BS01 rna N/A N/A P68919 39794318
    939349 9h3r:W (4.12) BS01 rna N/A N/A P0A7L8 39794318
    939350 9h3r:W (4.12) BS02 rna N/A N/A P0A7L8 39794318
    939351 9h3r:X (4.12) BS01 rna N/A N/A P0A7M2 39794318
    939352 9h3r:Y (4.12) BS01 rna N/A N/A P0A7M6 39794318
    939353 9h3r:Z (4.12) BS01 rna N/A N/A P0AG51 39794318
    939354 9h3s:0 (4.16) BS01 rna N/A N/A P0A7N4 39794318
    939355 9h3s:2 (4.16) BS01 rna N/A N/A P0A7P5 39794318
    939356 9h3s:4 (4.16) BS01 rna N/A N/A P0A7Q6 39794318
    939357 9h3s:C (4.16) BS01 rna N/A N/A P0A8X0 39794318
    939358 9h3s:D (4.16) BS01 rna N/A N/A P60438 39794318
    939359 9h3s:E (4.16) BS01 rna N/A N/A P60723 39794318
    939360 9h3s:F (4.16) BS01 rna N/A N/A P62399 39794318
    939361 9h3s:F (4.16) BS02 rna N/A N/A P62399 39794318
    939362 9h3s:G (4.16) BS01 rna N/A N/A P0AG55 39794318
    939363 9h3s:H (4.16) BS01 rna N/A N/A P0A7R1 39794318
    939364 9h3s:J (4.16) BS01 rna N/A N/A P0AA10 39794318
    939365 9h3s:K (4.16) BS01 rna N/A N/A P0ADY3 39794318
    939366 9h3s:L (4.16) BS01 rna N/A N/A P02413 39794318
    939367 9h3s:N (4.16) BS01 rna N/A N/A P0AG44 39794318
    939368 9h3s:O (4.16) BS01 rna N/A N/A P0C018 39794318
    939369 9h3s:O (4.16) BS02 rna N/A N/A P0C018 39794318
    939370 9h3s:P (4.16) BS01 rna N/A N/A P0A7K6 39794318
    939371 9h3s:Q (4.16) BS01 rna N/A N/A P0A7L3 39794318
    939372 9h3s:R (4.16) BS01 rna N/A N/A P0AG48 39794318
    939373 9h3s:S (4.16) BS01 rna N/A N/A P61175 39794318
    939374 9h3s:T (4.16) BS01 rna N/A N/A P0ADZ0 39794318
    939375 9h3s:U (4.16) BS01 rna N/A N/A P60624 39794318
    939376 9h3s:V (4.16) BS01 rna N/A N/A P68919 39794318
    939377 9h3s:W (4.16) BS01 rna N/A N/A P0A7L8 39794318
    939378 9h3s:W (4.16) BS02 rna N/A N/A P0A7L8 39794318
    939379 9h3s:X (4.16) BS01 rna N/A N/A P0A7M2 39794318
    939380 9h3s:Y (4.16) BS01 rna N/A N/A P0A7M6 39794318
    939381 9h3s:Z (4.16) BS01 rna N/A N/A P0AG51 39794318
    939382 9h3s:Z (4.16) BS02 rna N/A N/A P0AG51 39794318
    939383 9h3t:0 (3.85) BS01 rna N/A N/A P0A7N4 39794318
    939384 9h3t:2 (3.85) BS01 rna N/A N/A P0A7P5 39794318
    939385 9h3t:C (3.85) BS01 rna N/A N/A P60422 39794318
    939386 9h3t:D (3.85) BS01 rna N/A N/A P60438 39794318
    939387 9h3t:E (3.85) BS01 rna N/A N/A P60723 39794318
    939388 9h3t:H (3.85) BS01 rna N/A N/A P0A7R1 39794318
    939389 9h3t:J (3.85) BS01 rna N/A N/A P0AA10 39794318
    939390 9h3t:K (3.85) BS01 rna N/A N/A P0ADY3 39794318
    939391 9h3t:L (3.85) BS01 rna N/A N/A P02413 39794318
    939392 9h3t:N (3.85) BS01 rna N/A N/A P0AG44 39794318
    939393 9h3t:P (3.85) BS01 rna N/A N/A P0A7K6 39794318
    939394 9h3t:Q (3.85) BS01 rna N/A N/A P0A7L3 39794318
    939395 9h3t:R (3.85) BS01 rna N/A N/A P0AG48 39794318
    939396 9h3t:S (3.85) BS01 rna N/A N/A P61175 39794318
    939397 9h3t:T (3.85) BS01 rna N/A N/A P0ADZ0 39794318
    939398 9h3t:U (3.85) BS01 rna N/A N/A P60624 39794318
    939399 9h3t:X (3.85) BS01 rna N/A N/A P0A7M2 39794318
    939400 9h3t:Y (3.85) BS01 rna N/A N/A P0A7M6 39794318

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).