SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    939401 9b0q:SH (3.2) BS01 rna N/A GO:0002181 ... P62081 N/A
    939402 9b0q:SI (3.2) BS01 rna N/A GO:0002181 ... P62241 N/A
    939403 9b0q:SI (3.2) BS02 rna N/A GO:0002181 ... P62241 N/A
    939404 9b0q:SJ (3.2) BS01 rna N/A GO:0002181 ... P46781 N/A
    939405 9b0q:SK (3.2) BS01 rna N/A N/A P46783 N/A
    939406 9b0q:SL (3.2) BS01 rna N/A GO:0002181 ... P62280 N/A
    939407 9b0q:SM (3.2) BS01 rna N/A GO:0002181 ... P25398 N/A
    939408 9b0q:SN (3.2) BS01 rna N/A GO:0000462 ... P62277 N/A
    939409 9b0q:SN (3.2) BS02 rna N/A GO:0000462 ... P62277 N/A
    939410 9b0q:SO (3.2) BS01 rna N/A GO:0000028 ... P62263 N/A
    939411 9b0q:SP (3.2) BS01 rna N/A GO:0003723 ... P62841 N/A
    939412 9b0q:SP (3.2) BS02 rna N/A GO:0003723 ... P62841 N/A
    939413 9b0q:SQ (3.2) BS01 rna N/A GO:0000462 ... P62249 N/A
    939414 9b0q:SR (3.2) BS01 rna N/A GO:0002181 ... P08708 N/A
    939415 9b0q:SS (3.2) BS01 rna N/A GO:0002181 ... P62269 N/A
    939416 9b0q:ST (3.2) BS01 rna N/A GO:0000028 ... P39019 N/A
    939417 9b0q:SU (3.2) BS01 rna N/A GO:0003723 ... P60866 N/A
    939418 9b0q:SW (3.2) BS01 rna N/A GO:0002181 ... P62244 N/A
    939419 9b0q:SX (3.2) BS01 rna N/A GO:0002181 ... P62266 N/A
    939420 9b0q:SY (3.2) BS01 rna N/A GO:0002181 ... P62847 N/A
    939421 9b0q:SZ (3.2) BS01 rna N/A N/A P62851 N/A
    939422 9b0q:Sa (3.2) BS01 rna N/A GO:0003735 ... P62854 N/A
    939423 9b0q:Sa (3.2) BS02 ZN N/A GO:0003735 ... P62854 N/A
    939424 9b0q:Sb (3.2) BS01 rna N/A GO:0002181 ... P42677 N/A
    939425 9b0q:Sc (3.2) BS01 rna N/A GO:0000028 ... P62857 N/A
    939426 9b0q:Sd (3.2) BS01 rna N/A GO:0002181 ... P62273 N/A
    939427 9b0q:Se (3.2) BS01 rna N/A GO:0003735 ... P62861 N/A
    939428 9b0q:Sf (3.2) BS01 rna N/A GO:0003735 ... P62979 N/A
    939429 9b0q:Sg (3.2) BS01 rna N/A GO:0001891 ... P63244 N/A
    939430 9b0q:cB (3.2) BS01 rna N/A GO:0002039 ... P13639 N/A
    939431 9b0q:cB (3.2) BS02 rna N/A GO:0002039 ... P13639 N/A
    939432 9b0q:cB (3.2) BS03 rna N/A GO:0002039 ... P13639 N/A
    939433 9b0q:cH (3.2) BS01 rna N/A GO:0003677 ... O60869 N/A
    939434 9b0q:lA (3.2) BS01 rna N/A GO:0002181 ... P62917 N/A
    939435 9b0q:lA (3.2) BS02 rna N/A GO:0002181 ... P62917 N/A
    939436 9b0q:lA (3.2) BS03 MG N/A GO:0002181 ... P62917 N/A
    939437 9b0q:lB (3.2) BS01 rna N/A GO:0002181 ... P39023 N/A
    939438 9b0q:lC (3.2) BS01 rna N/A GO:0003735 ... P36578 N/A
    939439 9b0q:lC (3.2) BS02 rna N/A GO:0003735 ... P36578 N/A
    939440 9b0q:lD (3.2) BS01 rna N/A GO:0000027 ... P46777 N/A
    939441 9b0q:lD (3.2) BS02 rna N/A GO:0000027 ... P46777 N/A
    939442 9b0q:lE (3.2) BS01 rna N/A GO:0003735 ... Q02878 N/A
    939443 9b0q:lF (3.2) BS01 rna N/A GO:0000463 ... P18124 N/A
    939444 9b0q:lF (3.2) BS02 rna N/A GO:0000463 ... P18124 N/A
    939445 9b0q:lG (3.2) BS01 rna N/A GO:0000470 ... P62424 N/A
    939446 9b0q:lG (3.2) BS02 rna N/A GO:0000470 ... P62424 N/A
    939447 9b0q:lH (3.2) BS01 rna N/A GO:0002181 ... P32969 N/A
    939448 9b0q:lI (3.2) BS01 rna N/A GO:0000027 ... Q96L21 N/A
    939449 9b0q:lI (3.2) BS02 rna N/A GO:0000027 ... Q96L21 N/A
    939450 9b0q:lI (3.2) BS03 rna N/A GO:0000027 ... Q96L21 N/A
    939451 9b0q:lJ (3.2) BS01 rna N/A GO:0000027 ... P62913 N/A
    939452 9b0q:lJ (3.2) BS02 rna N/A GO:0000027 ... P62913 N/A
    939453 9b0q:lL (3.2) BS01 rna N/A GO:0002181 ... P26373 N/A
    939454 9b0q:lL (3.2) BS02 rna N/A GO:0002181 ... P26373 N/A
    939455 9b0q:lM (3.2) BS01 rna N/A GO:0003723 ... P50914 N/A
    939456 9b0q:lN (3.2) BS01 rna N/A GO:0002181 ... P61313 N/A
    939457 9b0q:lN (3.2) BS02 rna N/A GO:0002181 ... P61313 N/A
    939458 9b0q:lO (3.2) BS01 rna N/A GO:0002181 ... P40429 N/A
    939459 9b0q:lP (3.2) BS01 rna N/A GO:0003735 ... P18621 N/A
    939460 9b0q:lP (3.2) BS02 rna N/A GO:0003735 ... P18621 N/A
    939461 9b0q:lP (3.2) BS03 MG N/A GO:0003735 ... P18621 N/A
    939462 9b0q:lQ (3.2) BS01 rna N/A GO:0002181 ... Q07020 N/A
    939463 9b0q:lR (3.2) BS01 rna N/A GO:0002181 ... P84098 N/A
    939464 9b0q:lR (3.2) BS02 rna N/A GO:0002181 ... P84098 N/A
    939465 9b0q:lS (3.2) BS01 rna N/A GO:0002181 ... Q02543 N/A
    939466 9b0q:lS (3.2) BS02 rna N/A GO:0002181 ... Q02543 N/A
    939467 9b0q:lT (3.2) BS01 rna N/A GO:0001650 ... P46778 N/A
    939468 9b0q:lT (3.2) BS02 rna N/A GO:0001650 ... P46778 N/A
    939469 9b0q:lU (3.2) BS01 rna N/A GO:0003735 ... P35268 N/A
    939470 9b0q:lV (3.2) BS01 rna N/A GO:0000122 ... P62829 N/A
    939471 9b0q:lW (3.2) BS01 rna N/A GO:0003735 ... P83731 N/A
    939472 9b0q:lW (3.2) BS02 rna N/A GO:0003735 ... P83731 N/A
    939473 9b0q:lX (3.2) BS01 rna N/A GO:0003735 ... P62750 N/A
    939474 9b0q:lX (3.2) BS02 rna N/A GO:0003735 ... P62750 N/A
    939475 9b0q:lY (3.2) BS01 rna N/A GO:0002181 ... P61254 N/A
    939476 9b0q:lY (3.2) BS02 rna N/A GO:0002181 ... P61254 N/A
    939477 9b0q:lZ (3.2) BS01 rna N/A GO:0002181 ... P61353 N/A
    939478 9b0q:la (3.2) BS01 rna N/A GO:0002181 ... P46776 N/A
    939479 9b0q:lb (3.2) BS01 rna N/A GO:0003735 ... P47914 N/A
    939480 9b0q:lc (3.2) BS01 rna N/A GO:0003723 ... P62888 N/A
    939481 9b0q:lc (3.2) BS02 rna N/A GO:0003723 ... P62888 N/A
    939482 9b0q:ld (3.2) BS01 rna N/A GO:0003735 ... P62899 N/A
    939483 9b0q:le (3.2) BS01 rna N/A GO:0002181 ... P62910 N/A
    939484 9b0q:le (3.2) BS02 MG N/A GO:0002181 ... P62910 N/A
    939485 9b0q:lf (3.2) BS01 rna N/A GO:0002181 ... P18077 N/A
    939486 9b0q:lg (3.2) BS01 rna N/A GO:0002181 ... P49207 N/A
    939487 9b0q:lg (3.2) BS02 ZN N/A GO:0002181 ... P49207 N/A
    939488 9b0q:lh (3.2) BS01 rna N/A GO:0000463 ... P42766 N/A
    939489 9b0q:lh (3.2) BS02 rna N/A GO:0000463 ... P42766 N/A
    939490 9b0q:li (3.2) BS01 rna N/A GO:0002181 ... Q9Y3U8 N/A
    939491 9b0q:lj (3.2) BS01 rna N/A GO:0003735 ... P61927 N/A
    939492 9b0q:lj (3.2) BS02 rna N/A GO:0003735 ... P61927 N/A
    939493 9b0q:lj (3.2) BS03 ZN N/A GO:0003735 ... P61927 N/A
    939494 9b0q:lk (3.2) BS01 rna N/A GO:0002181 ... P63173 N/A
    939495 9b0q:ll (3.2) BS01 rna N/A GO:0002181 ... P62891 N/A
    939496 9b0q:ll (3.2) BS02 rna N/A GO:0002181 ... P62891 N/A
    939497 9b0q:lm (3.2) BS01 rna N/A GO:0003735 ... P62987 N/A
    939498 9b0q:lm (3.2) BS02 ZN N/A GO:0003735 ... P62987 N/A
    939499 9b0q:lo (3.2) BS01 rna N/A GO:0002181 ... P83881 N/A
    939500 9b0q:lo (3.2) BS02 rna N/A GO:0002181 ... P83881 N/A
    939501 9b0q:lo (3.2) BS03 ZN N/A GO:0002181 ... P83881 N/A
    939502 9b0q:lp (3.2) BS01 rna N/A GO:0002181 ... P61513 N/A
    939503 9b0q:lp (3.2) BS02 rna N/A GO:0002181 ... P61513 N/A
    939504 9b0q:lp (3.2) BS03 ZN N/A GO:0002181 ... P61513 N/A
    939505 9b0q:lr (3.2) BS01 rna N/A GO:0002181 ... P46779 N/A
    939506 9b0q:ls (3.2) BS01 rna N/A N/A P05388 N/A
    939507 9b0q:lt (3.2) BS01 rna N/A GO:0003735 ... P30050 N/A
    939508 9b0q:lz (3.2) BS01 rna N/A GO:0002181 ... P62906 N/A
    939509 9b0q:sA (3.2) BS01 rna N/A GO:0003735 ... P08865 N/A
    939510 9b0q:sB (3.2) BS01 rna N/A GO:0003735 ... P61247 N/A
    939511 9b0q:sB (3.2) BS02 rna N/A GO:0003735 ... P61247 N/A
    939512 9b0q:sC (3.2) BS01 rna N/A GO:0003723 ... P15880 N/A
    939513 9b0q:sD (3.2) BS01 rna N/A GO:0001228 ... P23396 N/A
    939514 9b0q:sE (3.2) BS01 rna N/A GO:0002181 ... P62701 N/A
    939515 9b0q:sF (3.2) BS01 rna N/A GO:0002181 ... P46782 N/A
    939516 9b0q:sG (3.2) BS01 rna N/A GO:0002181 ... P62753 N/A
    939517 9b0q:sH (3.2) BS01 rna N/A GO:0002181 ... P62081 N/A
    939518 9b0q:sI (3.2) BS01 rna N/A GO:0002181 ... P62241 N/A
    939519 9b0q:sJ (3.2) BS01 rna N/A GO:0002181 ... P46781 N/A
    939520 9b0q:sK (3.2) BS01 rna N/A N/A P46783 N/A
    939521 9b0q:sL (3.2) BS01 rna N/A GO:0002181 ... P62280 N/A
    939522 9b0q:sM (3.2) BS01 rna N/A GO:0002181 ... P25398 N/A
    939523 9b0q:sN (3.2) BS01 rna N/A GO:0000462 ... P62277 N/A
    939524 9b0q:sO (3.2) BS01 rna N/A GO:0000028 ... P62263 N/A
    939525 9b0q:sP (3.2) BS01 rna N/A GO:0003723 ... P62841 N/A
    939526 9b0q:sQ (3.2) BS01 rna N/A GO:0000462 ... P62249 N/A
    939527 9b0q:sR (3.2) BS01 rna N/A GO:0002181 ... P08708 N/A
    939528 9b0q:sR (3.2) BS02 MG N/A GO:0002181 ... P08708 N/A
    939529 9b0q:sS (3.2) BS01 rna N/A GO:0002181 ... P62269 N/A
    939530 9b0q:sT (3.2) BS01 rna N/A GO:0000028 ... P39019 N/A
    939531 9b0q:sU (3.2) BS01 rna N/A GO:0003723 ... P60866 N/A
    939532 9b0q:sW (3.2) BS01 rna N/A GO:0002181 ... P62244 N/A
    939533 9b0q:sX (3.2) BS01 rna N/A GO:0002181 ... P62266 N/A
    939534 9b0q:sY (3.2) BS01 rna N/A GO:0002181 ... P62847 N/A
    939535 9b0q:sZ (3.2) BS01 rna N/A N/A P62851 N/A
    939536 9b0q:sa (3.2) BS01 rna N/A GO:0003735 ... P62854 N/A
    939537 9b0q:sa (3.2) BS02 ZN N/A GO:0003735 ... P62854 N/A
    939538 9b0q:sb (3.2) BS01 rna N/A GO:0002181 ... P42677 N/A
    939539 9b0q:sc (3.2) BS01 rna N/A GO:0000028 ... P62857 N/A
    939540 9b0q:sd (3.2) BS01 rna N/A GO:0002181 ... P62273 N/A
    939541 9b0q:se (3.2) BS01 rna N/A GO:0003735 ... P62861 N/A
    939542 9b0q:sf (3.2) BS01 rna N/A GO:0003735 ... P62979 N/A
    939543 9b0q:sg (3.2) BS01 rna N/A GO:0001891 ... P63244 N/A
    939544 9b0s:CF (3.8) BS01 rna N/A GO:0003746 ... Q5VTE0 N/A
    939545 9b0s:CF (3.8) BS02 rna N/A GO:0003746 ... Q5VTE0 N/A
    939546 9b0s:LA (3.8) BS01 rna N/A GO:0002181 ... P62917 N/A
    939547 9b0s:LA (3.8) BS02 MG N/A GO:0002181 ... P62917 N/A
    939548 9b0s:LB (3.8) BS01 rna N/A GO:0002181 ... P39023 N/A
    939549 9b0s:LC (3.8) BS01 rna N/A GO:0003735 ... P36578 N/A
    939550 9b0s:LC (3.8) BS02 rna N/A GO:0003735 ... P36578 N/A
    939551 9b0s:LD (3.8) BS01 rna N/A GO:0000027 ... P46777 N/A
    939552 9b0s:LD (3.8) BS02 rna N/A GO:0000027 ... P46777 N/A
    939553 9b0s:LE (3.8) BS01 rna N/A GO:0003735 ... Q02878 N/A
    939554 9b0s:LF (3.8) BS01 rna N/A GO:0000463 ... P18124 N/A
    939555 9b0s:LF (3.8) BS02 rna N/A GO:0000463 ... P18124 N/A
    939556 9b0s:LG (3.8) BS01 rna N/A GO:0000470 ... P62424 N/A
    939557 9b0s:LG (3.8) BS02 rna N/A GO:0000470 ... P62424 N/A
    939558 9b0s:LG (3.8) BS03 rna N/A GO:0000470 ... P62424 N/A
    939559 9b0s:LH (3.8) BS01 rna N/A GO:0002181 ... P32969 N/A
    939560 9b0s:LI (3.8) BS01 rna N/A GO:0000027 ... Q96L21 N/A
    939561 9b0s:LI (3.8) BS02 rna N/A GO:0000027 ... Q96L21 N/A
    939562 9b0s:LJ (3.8) BS01 rna N/A GO:0000027 ... P62913 N/A
    939563 9b0s:LJ (3.8) BS02 rna N/A GO:0000027 ... P62913 N/A
    939564 9b0s:LJ (3.8) BS03 rna N/A GO:0000027 ... P62913 N/A
    939565 9b0s:LL (3.8) BS01 rna N/A GO:0002181 ... P26373 N/A
    939566 9b0s:LL (3.8) BS02 rna N/A GO:0002181 ... P26373 N/A
    939567 9b0s:LM (3.8) BS01 rna N/A GO:0003723 ... P50914 N/A
    939568 9b0s:LN (3.8) BS01 rna N/A GO:0002181 ... P61313 N/A
    939569 9b0s:LN (3.8) BS02 rna N/A GO:0002181 ... P61313 N/A
    939570 9b0s:LO (3.8) BS01 rna N/A GO:0002181 ... P40429 N/A
    939571 9b0s:LP (3.8) BS01 rna N/A GO:0003735 ... P18621 N/A
    939572 9b0s:LP (3.8) BS02 rna N/A GO:0003735 ... P18621 N/A
    939573 9b0s:LQ (3.8) BS01 rna N/A GO:0002181 ... Q07020 N/A
    939574 9b0s:LR (3.8) BS01 rna N/A GO:0002181 ... P84098 N/A
    939575 9b0s:LR (3.8) BS02 rna N/A GO:0002181 ... P84098 N/A
    939576 9b0s:LS (3.8) BS01 rna N/A GO:0002181 ... Q02543 N/A
    939577 9b0s:LS (3.8) BS02 rna N/A GO:0002181 ... Q02543 N/A
    939578 9b0s:LT (3.8) BS01 rna N/A GO:0001650 ... P46778 N/A
    939579 9b0s:LT (3.8) BS02 rna N/A GO:0001650 ... P46778 N/A
    939580 9b0s:LU (3.8) BS01 rna N/A GO:0003735 ... P35268 N/A
    939581 9b0s:LV (3.8) BS01 rna N/A GO:0000122 ... P62829 N/A
    939582 9b0s:LW (3.8) BS01 rna N/A GO:0003735 ... P83731 N/A
    939583 9b0s:LW (3.8) BS02 rna N/A GO:0003735 ... P83731 N/A
    939584 9b0s:LX (3.8) BS01 rna N/A GO:0003735 ... P62750 N/A
    939585 9b0s:LX (3.8) BS02 rna N/A GO:0003735 ... P62750 N/A
    939586 9b0s:LY (3.8) BS01 rna N/A GO:0002181 ... P61254 N/A
    939587 9b0s:LY (3.8) BS02 rna N/A GO:0002181 ... P61254 N/A
    939588 9b0s:LZ (3.8) BS01 rna N/A GO:0002181 ... P61353 N/A
    939589 9b0s:La (3.8) BS01 rna N/A GO:0002181 ... P46776 N/A
    939590 9b0s:Lb (3.8) BS01 rna N/A GO:0003735 ... P47914 N/A
    939591 9b0s:Lc (3.8) BS01 rna N/A GO:0003723 ... P62888 N/A
    939592 9b0s:Ld (3.8) BS01 rna N/A GO:0003735 ... P62899 N/A
    939593 9b0s:Le (3.8) BS01 rna N/A GO:0002181 ... P62910 N/A
    939594 9b0s:Le (3.8) BS02 MG N/A GO:0002181 ... P62910 N/A
    939595 9b0s:Lf (3.8) BS01 rna N/A GO:0002181 ... P18077 N/A
    939596 9b0s:Lg (3.8) BS01 rna N/A GO:0002181 ... P49207 N/A
    939597 9b0s:Lg (3.8) BS02 MG N/A GO:0002181 ... P49207 N/A
    939598 9b0s:Lg (3.8) BS03 ZN N/A GO:0002181 ... P49207 N/A
    939599 9b0s:Lh (3.8) BS01 rna N/A GO:0000463 ... P42766 N/A
    939600 9b0s:Lh (3.8) BS02 rna N/A GO:0000463 ... P42766 N/A
    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).