SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    939401 9h3t:Z (3.85) BS01 rna N/A N/A P0AG51 39794318
    939402 9h3u:0 (3.47) BS01 rna N/A N/A P0A7N4 39794318
    939403 9h3u:2 (3.47) BS01 rna N/A N/A P0A7P5 39794318
    939404 9h3u:C (3.47) BS01 rna N/A N/A P60422 39794318
    939405 9h3u:D (3.47) BS01 rna N/A N/A P60438 39794318
    939406 9h3u:E (3.47) BS01 rna N/A N/A P60723 39794318
    939407 9h3u:H (3.47) BS01 rna N/A N/A P0A7R1 39794318
    939408 9h3u:J (3.47) BS01 rna N/A N/A P0AA10 39794318
    939409 9h3u:K (3.47) BS01 rna N/A N/A P0ADY3 39794318
    939410 9h3u:L (3.47) BS01 rna N/A N/A P02413 39794318
    939411 9h3u:N (3.47) BS01 rna N/A N/A P0AG44 39794318
    939412 9h3u:P (3.47) BS01 rna N/A N/A P0A7K6 39794318
    939413 9h3u:Q (3.47) BS01 rna N/A N/A P0A7L3 39794318
    939414 9h3u:R (3.47) BS01 rna N/A N/A P0AG48 39794318
    939415 9h3u:S (3.47) BS01 rna N/A N/A P61175 39794318
    939416 9h3u:T (3.47) BS01 rna N/A N/A P0ADZ0 39794318
    939417 9h3u:U (3.47) BS01 rna N/A N/A P60624 39794318
    939418 9h3u:X (3.47) BS01 rna N/A N/A P0A7M2 39794318
    939419 9h3u:Y (3.47) BS01 rna N/A N/A P0A7M6 39794318
    939420 9h3u:Z (3.47) BS01 rna N/A N/A P0AG51 39794318
    939421 9h3v:0 (3.55) BS01 rna N/A N/A P0A7N4 39794318
    939422 9h3v:2 (3.55) BS01 rna N/A N/A P0A7P5 39794318
    939423 9h3v:C (3.55) BS01 rna N/A N/A P60422 39794318
    939424 9h3v:D (3.55) BS01 rna N/A N/A P60438 39794318
    939425 9h3v:E (3.55) BS01 rna N/A N/A P60723 39794318
    939426 9h3v:F (3.55) BS01 rna N/A N/A P62399 39794318
    939427 9h3v:F (3.55) BS02 rna N/A N/A P62399 39794318
    939428 9h3v:H (3.55) BS01 rna N/A N/A P0A7R1 39794318
    939429 9h3v:J (3.55) BS01 rna N/A N/A P0AA10 39794318
    939430 9h3v:K (3.55) BS01 rna N/A N/A P0ADY3 39794318
    939431 9h3v:L (3.55) BS01 rna N/A N/A P02413 39794318
    939432 9h3v:N (3.55) BS01 rna N/A N/A P0AG44 39794318
    939433 9h3v:O (3.55) BS01 rna N/A N/A P0C018 39794318
    939434 9h3v:O (3.55) BS02 rna N/A N/A P0C018 39794318
    939435 9h3v:P (3.55) BS01 rna N/A N/A P0A7K6 39794318
    939436 9h3v:Q (3.55) BS01 rna N/A N/A P0A7L3 39794318
    939437 9h3v:R (3.55) BS01 rna N/A N/A P0AG48 39794318
    939438 9h3v:S (3.55) BS01 rna N/A N/A P61175 39794318
    939439 9h3v:T (3.55) BS01 rna N/A N/A P0ADZ0 39794318
    939440 9h3v:U (3.55) BS01 rna N/A N/A P60624 39794318
    939441 9h3v:V (3.55) BS01 rna N/A N/A P68919 39794318
    939442 9h3v:W (3.55) BS01 rna N/A N/A P0A7L8 39794318
    939443 9h3v:W (3.55) BS02 rna N/A N/A P0A7L8 39794318
    939444 9h3v:X (3.55) BS01 rna N/A N/A P0A7M2 39794318
    939445 9h3v:Y (3.55) BS01 rna N/A N/A P0A7M6 39794318
    939446 9h3v:Z (3.55) BS01 rna N/A N/A P0AG51 39794318
    939447 9h3v:Z (3.55) BS02 rna N/A N/A P0AG51 39794318
    939448 9h3w:0 (5.38) BS01 rna N/A N/A P0A7N4 39794318
    939449 9h3w:2 (5.38) BS01 rna N/A N/A P0A7P5 39794318
    939450 9h3w:C (5.38) BS01 rna N/A N/A P60422 39794318
    939451 9h3w:D (5.38) BS01 rna N/A N/A P60438 39794318
    939452 9h3w:E (5.38) BS01 rna N/A N/A P60723 39794318
    939453 9h3w:F (5.38) BS01 rna N/A N/A P62399 39794318
    939454 9h3w:F (5.38) BS02 rna N/A N/A P62399 39794318
    939455 9h3w:H (5.38) BS01 rna N/A N/A P0A7R1 39794318
    939456 9h3w:J (5.38) BS01 rna N/A N/A P0AA10 39794318
    939457 9h3w:K (5.38) BS01 rna N/A N/A P0ADY3 39794318
    939458 9h3w:L (5.38) BS01 rna N/A N/A P02413 39794318
    939459 9h3w:N (5.38) BS01 rna N/A N/A P0AG44 39794318
    939460 9h3w:O (5.38) BS01 rna N/A N/A P0C018 39794318
    939461 9h3w:O (5.38) BS02 rna N/A N/A P0C018 39794318
    939462 9h3w:P (5.38) BS01 rna N/A N/A P0A7K6 39794318
    939463 9h3w:Q (5.38) BS01 rna N/A N/A P0A7L3 39794318
    939464 9h3w:R (5.38) BS01 rna N/A N/A P0AG48 39794318
    939465 9h3w:S (5.38) BS01 rna N/A N/A P61175 39794318
    939466 9h3w:T (5.38) BS01 rna N/A N/A P0ADZ0 39794318
    939467 9h3w:U (5.38) BS01 rna N/A N/A P60624 39794318
    939468 9h3w:V (5.38) BS01 rna N/A N/A P68919 39794318
    939469 9h3w:V (5.38) BS02 rna N/A N/A P68919 39794318
    939470 9h3w:W (5.38) BS01 rna N/A N/A P0A7L8 39794318
    939471 9h3w:W (5.38) BS02 rna N/A N/A P0A7L8 39794318
    939472 9h3w:X (5.38) BS01 rna N/A N/A P0A7M2 39794318
    939473 9h3w:Y (5.38) BS01 rna N/A N/A P0A7M6 39794318
    939474 9h3w:Z (5.38) BS01 rna N/A N/A P0AG51 39794318
    939475 9h3x:0 (4.12) BS01 rna N/A N/A P0A7N4 39794318
    939476 9h3x:1 (4.12) BS01 rna N/A N/A P0A7N9 39794318
    939477 9h3x:2 (4.12) BS01 rna N/A N/A P0A7P5 39794318
    939478 9h3x:3 (4.12) BS01 rna N/A N/A P0A7Q1 39794318
    939479 9h3x:C (4.12) BS01 rna N/A N/A P60422 39794318
    939480 9h3x:D (4.12) BS01 rna N/A N/A P60438 39794318
    939481 9h3x:E (4.12) BS01 rna N/A N/A P60723 39794318
    939482 9h3x:F (4.12) BS01 rna N/A N/A P62399 39794318
    939483 9h3x:F (4.12) BS02 rna N/A N/A P62399 39794318
    939484 9h3x:H (4.12) BS01 rna N/A N/A P0A7R1 39794318
    939485 9h3x:J (4.12) BS01 rna N/A N/A P0AA10 39794318
    939486 9h3x:K (4.12) BS01 rna N/A N/A P0ADY3 39794318
    939487 9h3x:L (4.12) BS01 rna N/A N/A P02413 39794318
    939488 9h3x:N (4.12) BS01 rna N/A N/A P0AG44 39794318
    939489 9h3x:O (4.12) BS01 rna N/A N/A P0C018 39794318
    939490 9h3x:O (4.12) BS02 rna N/A N/A P0C018 39794318
    939491 9h3x:P (4.12) BS01 rna N/A N/A P0A7K6 39794318
    939492 9h3x:Q (4.12) BS01 rna N/A N/A P0A7L3 39794318
    939493 9h3x:R (4.12) BS01 rna N/A N/A P0AG48 39794318
    939494 9h3x:S (4.12) BS01 rna N/A N/A P61175 39794318
    939495 9h3x:T (4.12) BS01 rna N/A N/A P0ADZ0 39794318
    939496 9h3x:U (4.12) BS01 rna N/A N/A P60624 39794318
    939497 9h3x:V (4.12) BS01 rna N/A N/A P68919 39794318
    939498 9h3x:W (4.12) BS01 rna N/A N/A P0A7L8 39794318
    939499 9h3x:W (4.12) BS02 rna N/A N/A P0A7L8 39794318
    939500 9h3x:X (4.12) BS01 rna N/A N/A P0A7M2 39794318
    939501 9h3x:Y (4.12) BS01 rna N/A N/A P0A7M6 39794318
    939502 9h3x:Z (4.12) BS01 rna N/A N/A P0AG51 39794318
    939503 9h3y:0 (3.09) BS01 rna N/A N/A P0A7N4 39794318
    939504 9h3y:2 (3.09) BS01 rna N/A N/A P0A7P5 39794318
    939505 9h3y:3 (3.09) BS01 rna N/A N/A P0A7Q1 39794318
    939506 9h3y:4 (3.09) BS01 rna N/A N/A P0A7Q6 39794318
    939507 9h3y:C (3.09) BS01 rna N/A N/A P60422 39794318
    939508 9h3y:D (3.09) BS01 rna N/A N/A P60438 39794318
    939509 9h3y:E (3.09) BS01 rna N/A N/A P60723 39794318
    939510 9h3y:F (3.09) BS01 rna N/A N/A P62399 39794318
    939511 9h3y:F (3.09) BS02 rna N/A N/A P62399 39794318
    939512 9h3y:G (3.09) BS01 rna N/A N/A P0AG55 39794318
    939513 9h3y:H (3.09) BS01 rna N/A N/A P0A7R1 39794318
    939514 9h3y:J (3.09) BS01 rna N/A N/A P0AA10 39794318
    939515 9h3y:K (3.09) BS01 rna N/A N/A P0ADY3 39794318
    939516 9h3y:L (3.09) BS01 rna N/A N/A P02413 39794318
    939517 9h3y:N (3.09) BS01 rna N/A N/A P0AG44 39794318
    939518 9h3y:O (3.09) BS01 rna N/A N/A P0C018 39794318
    939519 9h3y:O (3.09) BS02 rna N/A N/A P0C018 39794318
    939520 9h3y:P (3.09) BS01 rna N/A N/A P0A7K6 39794318
    939521 9h3y:Q (3.09) BS01 rna N/A N/A P0A7L3 39794318
    939522 9h3y:R (3.09) BS01 rna N/A N/A P0AG48 39794318
    939523 9h3y:S (3.09) BS01 rna N/A N/A P61175 39794318
    939524 9h3y:T (3.09) BS01 rna N/A N/A P0ADZ0 39794318
    939525 9h3y:U (3.09) BS01 rna N/A N/A P60624 39794318
    939526 9h3y:V (3.09) BS01 rna N/A N/A P68919 39794318
    939527 9h3y:W (3.09) BS01 rna N/A N/A P0A7L8 39794318
    939528 9h3y:X (3.09) BS01 rna N/A N/A P0A7M2 39794318
    939529 9h3y:Y (3.09) BS01 rna N/A N/A P0A7M6 39794318
    939530 9h3y:Z (3.09) BS01 rna N/A N/A P0AG51 39794318
    939531 9h3z:0 (2.98) BS01 rna N/A N/A P0A7N4 39794318
    939532 9h3z:1 (2.98) BS01 rna N/A N/A P0A7N9 39794318
    939533 9h3z:2 (2.98) BS01 rna N/A N/A P0A7P5 39794318
    939534 9h3z:3 (2.98) BS01 rna N/A N/A P0A7Q1 39794318
    939535 9h3z:4 (2.98) BS01 rna N/A N/A P0A7Q6 39794318
    939536 9h3z:C (2.98) BS01 rna N/A N/A P60422 39794318
    939537 9h3z:D (2.98) BS01 rna N/A N/A P60438 39794318
    939538 9h3z:E (2.98) BS01 rna N/A N/A P60723 39794318
    939539 9h3z:F (2.98) BS01 rna N/A N/A P62399 39794318
    939540 9h3z:F (2.98) BS02 rna N/A N/A P62399 39794318
    939541 9h3z:G (2.98) BS01 rna N/A N/A P0AG55 39794318
    939542 9h3z:H (2.98) BS01 rna N/A N/A P0A7R1 39794318
    939543 9h3z:J (2.98) BS01 rna N/A N/A P0AA10 39794318
    939544 9h3z:K (2.98) BS01 rna N/A N/A P0ADY3 39794318
    939545 9h3z:L (2.98) BS01 rna N/A N/A P02413 39794318
    939546 9h3z:M (2.98) BS01 rna N/A N/A P0ADY7 39794318
    939547 9h3z:M (2.98) BS02 rna N/A N/A P0ADY7 39794318
    939548 9h3z:N (2.98) BS01 rna N/A N/A P0AG44 39794318
    939549 9h3z:O (2.98) BS01 rna N/A N/A P0C018 39794318
    939550 9h3z:O (2.98) BS02 rna N/A N/A P0C018 39794318
    939551 9h3z:P (2.98) BS01 rna N/A N/A P0A7K6 39794318
    939552 9h3z:Q (2.98) BS01 rna N/A N/A P0A7L3 39794318
    939553 9h3z:R (2.98) BS01 rna N/A N/A P0AG48 39794318
    939554 9h3z:S (2.98) BS01 rna N/A N/A P61175 39794318
    939555 9h3z:T (2.98) BS01 rna N/A N/A P0ADZ0 39794318
    939556 9h3z:U (2.98) BS01 rna N/A N/A P60624 39794318
    939557 9h3z:V (2.98) BS01 rna N/A N/A P68919 39794318
    939558 9h3z:V (2.98) BS02 rna N/A N/A P68919 39794318
    939559 9h3z:W (2.98) BS01 rna N/A N/A P0A7L8 39794318
    939560 9h3z:W (2.98) BS02 rna N/A N/A P0A7L8 39794318
    939561 9h3z:X (2.98) BS01 rna N/A N/A P0A7M2 39794318
    939562 9h3z:Y (2.98) BS01 rna N/A N/A P0A7M6 39794318
    939563 9h3z:Z (2.98) BS01 rna N/A N/A P0AG51 39794318
    939564 9h3z:Z (2.98) BS02 rna N/A N/A P0AG51 39794318
    939565 9h40:A (1.8) BS01 ALA N/A GO:0004458 ... A0A6I3XBB3 39613284
    939566 9h40:A (1.8) BS02 FAD N/A GO:0004458 ... A0A6I3XBB3 39613284
    939567 9h40:C (1.8) BS01 GLY N/A GO:0004458 ... A0A6I3XBB3 39613284
    939568 9h40:C (1.8) BS02 FAD N/A GO:0004458 ... A0A6I3XBB3 39613284
    939569 9h44:A (1.74) BS01 O4B N/A N/A O94953 N/A
    939570 9h45:A (2.08) BS01 rna N/A N/A P0A6X3 39868539
    939571 9h45:B (2.08) BS01 rna N/A N/A P0A6X3 39868539
    939572 9h45:C (2.08) BS01 rna N/A N/A P0A6X3 39868539
    939573 9h45:D (2.08) BS01 rna N/A N/A P0A6X3 39868539
    939574 9h45:E (2.08) BS01 rna N/A N/A P0A6X3 39868539
    939575 9h45:F (2.08) BS01 rna N/A N/A P0A6X3 39868539
    939576 9h46:A (3.163) BS01 A1ISA N/A N/A P00533 N/A
    939577 9h49:A (3.52) BS01 NH3 N/A N/A P02787 39711171
    939578 9h4d:A (2.117) BS01 A1ISH N/A N/A Q16552 39715021
    939579 9h4d:B (2.117) BS01 A1ISH N/A N/A Q16552 39715021
    939580 9h4o:A (2.0) BS01 A1ISG N/A N/A Q16552 39715021
    939581 9h4o:B (2.0) BS01 A1ISG N/A N/A Q16552 39715021
    939582 9h4o:C (2.0) BS01 A1ISG N/A N/A Q16552 39715021
    939583 9h4o:D (2.0) BS01 A1ISG N/A N/A Q16552 39715021
    939584 9h5p:A (2.3) BS01 FAD N/A N/A A0AAJ6N6J2 39706511
    939585 9h5p:A (2.3) BS02 PUT N/A N/A A0AAJ6N6J2 39706511
    939586 9h5p:B (2.3) BS01 FAD N/A N/A A0AAJ6N6J2 39706511
    939587 9h5q:A (1.8) BS01 FAD N/A N/A A0AAJ6N6J2 39706511
    939588 9h5q:A (1.8) BS02 13D N/A N/A A0AAJ6N6J2 39706511
    939589 9h5q:B (1.8) BS01 FAD N/A N/A A0AAJ6N6J2 39706511
    939590 9h5q:B (1.8) BS02 SPD N/A N/A A0AAJ6N6J2 39706511
    939591 9h5q:B (1.8) BS03 MG N/A N/A A0AAJ6N6J2 39706511
    939592 9h5z:A (2.2) BS01 FAD N/A N/A A0AAJ6N6J2 39706511
    939593 9h5z:A (2.2) BS02 MG N/A N/A A0AAJ6N6J2 39706511
    939594 9h5z:B (2.2) BS01 FAD N/A N/A A0AAJ6N6J2 39706511
    939595 9h5z:B (2.2) BS02 ABN N/A N/A A0AAJ6N6J2 39706511
    939596 9h64:A (1.6) BS01 FAD N/A N/A A0AAJ6N6J2 39706511
    939597 9h64:A (1.6) BS02 A1ISO N/A N/A A0AAJ6N6J2 39706511
    939598 9h64:B (1.6) BS01 FAD N/A N/A A0AAJ6N6J2 39706511
    939599 9h64:B (1.6) BS02 A1ISO N/A N/A A0AAJ6N6J2 39706511
    939600 9h76:A (2.9) BS01 ALA N/A N/A N/A 39822574

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).