SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    939601 9b0s:Li (3.8) BS01 rna N/A GO:0002181 ... Q9Y3U8 N/A
    939602 9b0s:Lj (3.8) BS01 rna N/A GO:0003735 ... P61927 N/A
    939603 9b0s:Lj (3.8) BS02 rna N/A GO:0003735 ... P61927 N/A
    939604 9b0s:Lj (3.8) BS03 ZN N/A GO:0003735 ... P61927 N/A
    939605 9b0s:Lk (3.8) BS01 rna N/A GO:0002181 ... P63173 N/A
    939606 9b0s:Ll (3.8) BS01 rna N/A GO:0002181 ... P62891 N/A
    939607 9b0s:Ll (3.8) BS02 rna N/A GO:0002181 ... P62891 N/A
    939608 9b0s:Lm (3.8) BS01 rna N/A GO:0003735 ... P62987 N/A
    939609 9b0s:Lm (3.8) BS02 ZN N/A GO:0003735 ... P62987 N/A
    939610 9b0s:Lo (3.8) BS01 rna N/A GO:0002181 ... P83881 N/A
    939611 9b0s:Lo (3.8) BS02 rna N/A GO:0002181 ... P83881 N/A
    939612 9b0s:Lo (3.8) BS03 rna N/A GO:0002181 ... P83881 N/A
    939613 9b0s:Lo (3.8) BS04 ZN N/A GO:0002181 ... P83881 N/A
    939614 9b0s:Lp (3.8) BS01 rna N/A GO:0002181 ... P61513 N/A
    939615 9b0s:Lp (3.8) BS02 ZN N/A GO:0002181 ... P61513 N/A
    939616 9b0s:Lr (3.8) BS01 rna N/A GO:0002181 ... P46779 N/A
    939617 9b0s:Ls (3.8) BS01 rna N/A N/A P05388 N/A
    939618 9b0s:Lt (3.8) BS01 rna N/A GO:0003735 ... P30050 N/A
    939619 9b0s:Lz (3.8) BS01 rna N/A GO:0002181 ... P62906 N/A
    939620 9b0s:Lz (3.8) BS02 rna N/A GO:0002181 ... P62906 N/A
    939621 9b0s:SA (3.8) BS01 rna N/A GO:0003735 ... P08865 N/A
    939622 9b0s:SB (3.8) BS01 rna N/A GO:0003735 ... P61247 N/A
    939623 9b0s:SC (3.8) BS01 rna N/A GO:0003723 ... P15880 N/A
    939624 9b0s:SD (3.8) BS01 rna N/A GO:0001228 ... P23396 N/A
    939625 9b0s:SE (3.8) BS01 rna N/A GO:0002181 ... P62701 N/A
    939626 9b0s:SF (3.8) BS01 rna N/A GO:0002181 ... P46782 N/A
    939627 9b0s:SF (3.8) BS02 rna N/A GO:0002181 ... P46782 N/A
    939628 9b0s:SG (3.8) BS01 rna N/A GO:0002181 ... P62753 N/A
    939629 9b0s:SH (3.8) BS01 rna N/A GO:0002181 ... P62081 N/A
    939630 9b0s:SI (3.8) BS01 rna N/A GO:0002181 ... P62241 N/A
    939631 9b0s:SI (3.8) BS02 rna N/A GO:0002181 ... P62241 N/A
    939632 9b0s:SJ (3.8) BS01 rna N/A GO:0002181 ... P46781 N/A
    939633 9b0s:SK (3.8) BS01 rna N/A N/A P46783 N/A
    939634 9b0s:SL (3.8) BS01 rna N/A GO:0002181 ... P62280 N/A
    939635 9b0s:SM (3.8) BS01 rna N/A GO:0002181 ... P25398 N/A
    939636 9b0s:SN (3.8) BS01 rna N/A GO:0000462 ... P62277 N/A
    939637 9b0s:SO (3.8) BS01 rna N/A GO:0000028 ... P62263 N/A
    939638 9b0s:SP (3.8) BS01 rna N/A GO:0003723 ... P62841 N/A
    939639 9b0s:SQ (3.8) BS01 rna N/A GO:0000462 ... P62249 N/A
    939640 9b0s:SR (3.8) BS01 rna N/A GO:0002181 ... P08708 N/A
    939641 9b0s:SS (3.8) BS01 rna N/A GO:0002181 ... P62269 N/A
    939642 9b0s:ST (3.8) BS01 rna N/A GO:0000028 ... P39019 N/A
    939643 9b0s:SU (3.8) BS01 rna N/A GO:0003723 ... P60866 N/A
    939644 9b0s:SW (3.8) BS01 rna N/A GO:0002181 ... P62244 N/A
    939645 9b0s:SX (3.8) BS01 rna N/A GO:0002181 ... P62266 N/A
    939646 9b0s:SY (3.8) BS01 rna N/A GO:0002181 ... P62847 N/A
    939647 9b0s:SZ (3.8) BS01 rna N/A N/A P62851 N/A
    939648 9b0s:Sa (3.8) BS01 rna N/A GO:0003735 ... P62854 N/A
    939649 9b0s:Sa (3.8) BS02 ZN N/A GO:0003735 ... P62854 N/A
    939650 9b0s:Sb (3.8) BS01 rna N/A GO:0002181 ... P42677 N/A
    939651 9b0s:Sc (3.8) BS01 rna N/A GO:0000028 ... P62857 N/A
    939652 9b0s:Sd (3.8) BS01 rna N/A GO:0002181 ... P62273 N/A
    939653 9b0s:Se (3.8) BS01 rna N/A GO:0003735 ... P62861 N/A
    939654 9b0s:Sf (3.8) BS01 rna N/A GO:0003735 ... P62979 N/A
    939655 9b0s:Sg (3.8) BS01 rna N/A GO:0001891 ... P63244 N/A
    939656 9b0s:cB (3.8) BS01 rna N/A GO:0002039 ... P13639 N/A
    939657 9b0s:cB (3.8) BS02 rna N/A GO:0002039 ... P13639 N/A
    939658 9b0s:cB (3.8) BS03 rna N/A GO:0002039 ... P13639 N/A
    939659 9b0s:cH (3.8) BS01 rna N/A GO:0003677 ... O60869 N/A
    939660 9b0s:lA (3.8) BS01 rna N/A GO:0002181 ... P62917 N/A
    939661 9b0s:lA (3.8) BS02 rna N/A GO:0002181 ... P62917 N/A
    939662 9b0s:lA (3.8) BS03 MG N/A GO:0002181 ... P62917 N/A
    939663 9b0s:lB (3.8) BS01 rna N/A GO:0002181 ... P39023 N/A
    939664 9b0s:lC (3.8) BS01 rna N/A GO:0003735 ... P36578 N/A
    939665 9b0s:lC (3.8) BS02 rna N/A GO:0003735 ... P36578 N/A
    939666 9b0s:lD (3.8) BS01 rna N/A GO:0000027 ... P46777 N/A
    939667 9b0s:lD (3.8) BS02 rna N/A GO:0000027 ... P46777 N/A
    939668 9b0s:lE (3.8) BS01 rna N/A GO:0003735 ... Q02878 N/A
    939669 9b0s:lF (3.8) BS01 rna N/A GO:0000463 ... P18124 N/A
    939670 9b0s:lF (3.8) BS02 rna N/A GO:0000463 ... P18124 N/A
    939671 9b0s:lG (3.8) BS01 rna N/A GO:0000470 ... P62424 N/A
    939672 9b0s:lG (3.8) BS02 rna N/A GO:0000470 ... P62424 N/A
    939673 9b0s:lH (3.8) BS01 rna N/A GO:0002181 ... P32969 N/A
    939674 9b0s:lI (3.8) BS01 rna N/A GO:0000027 ... Q96L21 N/A
    939675 9b0s:lI (3.8) BS02 rna N/A GO:0000027 ... Q96L21 N/A
    939676 9b0s:lI (3.8) BS03 rna N/A GO:0000027 ... Q96L21 N/A
    939677 9b0s:lJ (3.8) BS01 rna N/A GO:0000027 ... P62913 N/A
    939678 9b0s:lJ (3.8) BS02 rna N/A GO:0000027 ... P62913 N/A
    939679 9b0s:lL (3.8) BS01 rna N/A GO:0002181 ... P26373 N/A
    939680 9b0s:lL (3.8) BS02 rna N/A GO:0002181 ... P26373 N/A
    939681 9b0s:lM (3.8) BS01 rna N/A GO:0003723 ... P50914 N/A
    939682 9b0s:lN (3.8) BS01 rna N/A GO:0002181 ... P61313 N/A
    939683 9b0s:lN (3.8) BS02 rna N/A GO:0002181 ... P61313 N/A
    939684 9b0s:lO (3.8) BS01 rna N/A GO:0002181 ... P40429 N/A
    939685 9b0s:lP (3.8) BS01 rna N/A GO:0003735 ... P18621 N/A
    939686 9b0s:lP (3.8) BS02 rna N/A GO:0003735 ... P18621 N/A
    939687 9b0s:lQ (3.8) BS01 rna N/A GO:0002181 ... Q07020 N/A
    939688 9b0s:lR (3.8) BS01 rna N/A GO:0002181 ... P84098 N/A
    939689 9b0s:lR (3.8) BS02 rna N/A GO:0002181 ... P84098 N/A
    939690 9b0s:lS (3.8) BS01 rna N/A GO:0002181 ... Q02543 N/A
    939691 9b0s:lS (3.8) BS02 rna N/A GO:0002181 ... Q02543 N/A
    939692 9b0s:lT (3.8) BS01 rna N/A GO:0001650 ... P46778 N/A
    939693 9b0s:lT (3.8) BS02 rna N/A GO:0001650 ... P46778 N/A
    939694 9b0s:lU (3.8) BS01 rna N/A GO:0003735 ... P35268 N/A
    939695 9b0s:lV (3.8) BS01 rna N/A GO:0000122 ... P62829 N/A
    939696 9b0s:lV (3.8) BS02 rna N/A GO:0000122 ... P62829 N/A
    939697 9b0s:lX (3.8) BS01 rna N/A GO:0003735 ... P62750 N/A
    939698 9b0s:lX (3.8) BS02 rna N/A GO:0003735 ... P62750 N/A
    939699 9b0s:lY (3.8) BS01 rna N/A GO:0002181 ... P61254 N/A
    939700 9b0s:lY (3.8) BS02 rna N/A GO:0002181 ... P61254 N/A
    939701 9b0s:lZ (3.8) BS01 rna N/A GO:0002181 ... P61353 N/A
    939702 9b0s:la (3.8) BS01 rna N/A GO:0002181 ... P46776 N/A
    939703 9b0s:lb (3.8) BS01 rna N/A GO:0003735 ... P47914 N/A
    939704 9b0s:lc (3.8) BS01 rna N/A GO:0003723 ... P62888 N/A
    939705 9b0s:lc (3.8) BS02 rna N/A GO:0003723 ... P62888 N/A
    939706 9b0s:ld (3.8) BS01 rna N/A GO:0003735 ... P62899 N/A
    939707 9b0s:le (3.8) BS01 rna N/A GO:0002181 ... P62910 N/A
    939708 9b0s:le (3.8) BS02 MG N/A GO:0002181 ... P62910 N/A
    939709 9b0s:lf (3.8) BS01 rna N/A GO:0002181 ... P18077 N/A
    939710 9b0s:lg (3.8) BS01 rna N/A GO:0002181 ... P49207 N/A
    939711 9b0s:lg (3.8) BS02 ZN N/A GO:0002181 ... P49207 N/A
    939712 9b0s:lh (3.8) BS01 rna N/A GO:0000463 ... P42766 N/A
    939713 9b0s:lh (3.8) BS02 rna N/A GO:0000463 ... P42766 N/A
    939714 9b0s:li (3.8) BS01 rna N/A GO:0002181 ... Q9Y3U8 N/A
    939715 9b0s:lj (3.8) BS01 rna N/A GO:0003735 ... P61927 N/A
    939716 9b0s:lj (3.8) BS02 rna N/A GO:0003735 ... P61927 N/A
    939717 9b0s:lj (3.8) BS03 ZN N/A GO:0003735 ... P61927 N/A
    939718 9b0s:lk (3.8) BS01 rna N/A GO:0002181 ... P63173 N/A
    939719 9b0s:ll (3.8) BS01 rna N/A GO:0002181 ... P62891 N/A
    939720 9b0s:ll (3.8) BS02 rna N/A GO:0002181 ... P62891 N/A
    939721 9b0s:lm (3.8) BS01 rna N/A GO:0003735 ... P62987 N/A
    939722 9b0s:lm (3.8) BS02 ZN N/A GO:0003735 ... P62987 N/A
    939723 9b0s:lo (3.8) BS01 rna N/A GO:0002181 ... P83881 N/A
    939724 9b0s:lo (3.8) BS02 rna N/A GO:0002181 ... P83881 N/A
    939725 9b0s:lo (3.8) BS03 ZN N/A GO:0002181 ... P83881 N/A
    939726 9b0s:lp (3.8) BS01 rna N/A GO:0002181 ... P61513 N/A
    939727 9b0s:lp (3.8) BS02 ZN N/A GO:0002181 ... P61513 N/A
    939728 9b0s:lr (3.8) BS01 rna N/A GO:0002181 ... P46779 N/A
    939729 9b0s:ls (3.8) BS01 rna N/A N/A P05388 N/A
    939730 9b0s:lt (3.8) BS01 rna N/A GO:0003735 ... P30050 N/A
    939731 9b0s:lz (3.8) BS01 rna N/A GO:0002181 ... P62906 N/A
    939732 9b0s:sA (3.8) BS01 rna N/A GO:0003735 ... P08865 N/A
    939733 9b0s:sB (3.8) BS01 rna N/A GO:0003735 ... P61247 N/A
    939734 9b0s:sB (3.8) BS02 rna N/A GO:0003735 ... P61247 N/A
    939735 9b0s:sC (3.8) BS01 rna N/A GO:0003723 ... P15880 N/A
    939736 9b0s:sD (3.8) BS01 rna N/A GO:0001228 ... P23396 N/A
    939737 9b0s:sE (3.8) BS01 rna N/A GO:0002181 ... P62701 N/A
    939738 9b0s:sE (3.8) BS02 rna N/A GO:0002181 ... P62701 N/A
    939739 9b0s:sF (3.8) BS01 rna N/A GO:0002181 ... P46782 N/A
    939740 9b0s:sG (3.8) BS01 rna N/A GO:0002181 ... P62753 N/A
    939741 9b0s:sH (3.8) BS01 rna N/A GO:0002181 ... P62081 N/A
    939742 9b0s:sI (3.8) BS01 rna N/A GO:0002181 ... P62241 N/A
    939743 9b0s:sI (3.8) BS02 rna N/A GO:0002181 ... P62241 N/A
    939744 9b0s:sJ (3.8) BS01 rna N/A GO:0002181 ... P46781 N/A
    939745 9b0s:sK (3.8) BS01 rna N/A N/A P46783 N/A
    939746 9b0s:sL (3.8) BS01 rna N/A GO:0002181 ... P62280 N/A
    939747 9b0s:sM (3.8) BS01 rna N/A GO:0002181 ... P25398 N/A
    939748 9b0s:sN (3.8) BS01 rna N/A GO:0000462 ... P62277 N/A
    939749 9b0s:sN (3.8) BS02 rna N/A GO:0000462 ... P62277 N/A
    939750 9b0s:sO (3.8) BS01 rna N/A GO:0000028 ... P62263 N/A
    939751 9b0s:sP (3.8) BS01 rna N/A GO:0003723 ... P62841 N/A
    939752 9b0s:sP (3.8) BS02 rna N/A GO:0003723 ... P62841 N/A
    939753 9b0s:sQ (3.8) BS01 rna N/A GO:0000462 ... P62249 N/A
    939754 9b0s:sR (3.8) BS01 rna N/A GO:0002181 ... P08708 N/A
    939755 9b0s:sS (3.8) BS01 rna N/A GO:0002181 ... P62269 N/A
    939756 9b0s:sT (3.8) BS01 rna N/A GO:0000028 ... P39019 N/A
    939757 9b0s:sU (3.8) BS01 rna N/A GO:0003723 ... P60866 N/A
    939758 9b0s:sW (3.8) BS01 rna N/A GO:0002181 ... P62244 N/A
    939759 9b0s:sX (3.8) BS01 rna N/A GO:0002181 ... P62266 N/A
    939760 9b0s:sY (3.8) BS01 rna N/A GO:0002181 ... P62847 N/A
    939761 9b0s:sZ (3.8) BS01 rna N/A N/A P62851 N/A
    939762 9b0s:sa (3.8) BS01 rna N/A GO:0003735 ... P62854 N/A
    939763 9b0s:sa (3.8) BS02 ZN N/A GO:0003735 ... P62854 N/A
    939764 9b0s:sb (3.8) BS01 rna N/A GO:0002181 ... P42677 N/A
    939765 9b0s:sc (3.8) BS01 rna N/A GO:0000028 ... P62857 N/A
    939766 9b0s:sd (3.8) BS01 rna N/A GO:0002181 ... P62273 N/A
    939767 9b0s:se (3.8) BS01 rna N/A GO:0003735 ... P62861 N/A
    939768 9b0s:sf (3.8) BS01 rna N/A GO:0003735 ... P62979 N/A
    939769 9b0s:sg (3.8) BS01 rna N/A GO:0001891 ... P63244 N/A
    939770 9b0t:A (2.3) BS01 ADP N/A GO:0003824 ... P12532 39904336
    939771 9b0t:B (2.3) BS01 ADP N/A GO:0003824 ... P12532 39904336
    939772 9b0t:C (2.3) BS01 ADP N/A GO:0003824 ... P12532 39904336
    939773 9b0t:D (2.3) BS01 ADP N/A GO:0003824 ... P12532 39904336
    939774 9b0t:E (2.3) BS01 ADP N/A GO:0003824 ... P12532 39904336
    939775 9b0t:F (2.3) BS01 ADP N/A GO:0003824 ... P12532 39904336
    939776 9b0t:G (2.3) BS01 ADP N/A GO:0003824 ... P12532 39904336
    939777 9b0t:H (2.3) BS01 ADP N/A GO:0003824 ... P12532 39904336
    939778 9b0u:A (2.44) BS01 CRN N/A GO:0003824 ... P12532 39904336
    939779 9b0u:A (2.44) BS02 ADP N/A GO:0003824 ... P12532 39904336
    939780 9b0u:B (2.44) BS01 CRN N/A GO:0003824 ... P12532 39904336
    939781 9b0u:B (2.44) BS02 ADP N/A GO:0003824 ... P12532 39904336
    939782 9b0u:C (2.44) BS01 ADP N/A GO:0003824 ... P12532 39904336
    939783 9b0u:C (2.44) BS02 CRN N/A GO:0003824 ... P12532 39904336
    939784 9b0u:D (2.44) BS01 CRN N/A GO:0003824 ... P12532 39904336
    939785 9b0u:D (2.44) BS02 ADP N/A GO:0003824 ... P12532 39904336
    939786 9b0u:E (2.44) BS01 CRN N/A GO:0003824 ... P12532 39904336
    939787 9b0u:E (2.44) BS02 ADP N/A GO:0003824 ... P12532 39904336
    939788 9b0u:F (2.44) BS01 CRN N/A GO:0003824 ... P12532 39904336
    939789 9b0u:F (2.44) BS02 ADP N/A GO:0003824 ... P12532 39904336
    939790 9b0u:G (2.44) BS01 CRN N/A GO:0003824 ... P12532 39904336
    939791 9b0u:G (2.44) BS02 ADP N/A GO:0003824 ... P12532 39904336
    939792 9b0u:H (2.44) BS01 CRN N/A GO:0003824 ... P12532 39904336
    939793 9b0u:H (2.44) BS02 ADP N/A GO:0003824 ... P12532 39904336
    939794 9b0x:A (2.6) BS01 ATP N/A GO:0005524 ... A0AA88HWD9 40108410
    939795 9b0x:A (2.6) BS02 ATP N/A GO:0005524 ... A0AA88HWD9 40108410
    939796 9b0x:B (2.6) BS01 ATP N/A GO:0005524 ... A0AA88HWD9 40108410
    939797 9b0x:B (2.6) BS02 ADP N/A GO:0005524 ... A0AA88HWD9 40108410
    939798 9b0x:C (2.6) BS01 ATP N/A GO:0005524 ... A0AA88HWD9 40108410
    939799 9b0x:D (2.6) BS01 ATP N/A GO:0005524 ... A0AA88HL63 40108410
    939800 9b0x:E (2.6) BS01 ADP N/A GO:0005524 ... A0AA88HL63 40108410
    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).