SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    940001 9b1w:i (3.26) BS01 rna N/A GO:0003735 ... A0QSD8 N/A
    940002 9b1w:i (3.26) BS02 MG N/A GO:0003735 ... A0QSD8 N/A
    940003 9b1w:j (3.26) BS01 rna N/A GO:0003735 ... A0QSL9 N/A
    940004 9b1w:k (3.26) BS01 rna N/A GO:0003735 ... A0QSG5 N/A
    940005 9b1w:k (3.26) BS02 rna N/A GO:0003735 ... A0QSG5 N/A
    940006 9b1w:l (3.26) BS01 rna N/A GO:0003735 ... A0QV42 N/A
    940007 9b1w:l (3.26) BS02 rna N/A GO:0003735 ... A0QV42 N/A
    940008 9b1w:m (3.26) BS01 rna N/A GO:0000027 ... A0QYU6 N/A
    940009 9b1w:n (3.26) BS01 rna N/A GO:0003723 ... A0R151 N/A
    940010 9b1w:o (3.26) BS01 rna N/A GO:0003735 ... A0QSD6 N/A
    940011 9b1w:p (3.26) BS01 rna N/A GO:0003735 ... A0QSD3 N/A
    940012 9b1w:p (3.26) BS02 MG N/A GO:0003735 ... A0QSD3 N/A
    940013 9b1w:q (3.26) BS01 rna N/A GO:0003723 ... A0QSG0 N/A
    940014 9b1w:r (3.26) BS01 rna N/A GO:0003735 ... A0R3D2 N/A
    940015 9b1w:r (3.26) BS02 rna N/A GO:0003735 ... A0R3D2 N/A
    940016 9b1w:s (3.26) BS01 rna N/A GO:0003735 ... A0R150 N/A
    940017 9b1w:t (3.26) BS01 rna N/A GO:0003735 ... A0QV03 N/A
    940018 9b1w:t (3.26) BS02 MG N/A GO:0003735 ... A0QV03 N/A
    940019 9b1w:t (3.26) BS03 ZN N/A GO:0003735 ... A0QV03 N/A
    940020 9b1w:u (3.26) BS01 rna N/A GO:0003735 ... A0QSD9 N/A
    940021 9b1w:v (3.26) BS01 rna N/A GO:0003735 ... A0QS62 N/A
    940022 9b1w:w (3.26) BS01 rna N/A GO:0003735 ... A0QSG7 N/A
    940023 9b1w:x (3.26) BS01 rna N/A GO:0003735 ... A0R3I9 N/A
    940024 9b1w:y (3.26) BS01 rna N/A GO:0003735 ... A0QS39 N/A
    940025 9b1w:y (3.26) BS02 ZN N/A GO:0003735 ... A0QS39 N/A
    940026 9b1w:z (3.26) BS01 rna N/A GO:0003735 ... A0R7K0 N/A
    940027 9b1x:1 (3.07) BS01 rna N/A GO:0003735 ... A0QYU7 N/A
    940028 9b1x:2 (3.07) BS01 rna N/A GO:0003735 ... A0QSL4 N/A
    940029 9b1x:2 (3.07) BS02 ZN N/A GO:0003735 ... A0QSL4 N/A
    940030 9b1x:B (3.07) BS01 rna N/A N/A A0QR10 N/A
    940031 9b1x:C (3.07) BS01 rna N/A GO:0003676 ... A0QSD7 N/A
    940032 9b1x:D (3.07) BS01 rna N/A GO:0003723 ... A0QSL7 N/A
    940033 9b1x:E (3.07) BS01 rna N/A GO:0003723 ... A0QSG6 N/A
    940034 9b1x:F (3.07) BS01 rna N/A GO:0003735 ... A0R7F9 N/A
    940035 9b1x:F (3.07) BS02 MG N/A GO:0003735 ... A0R7F9 N/A
    940036 9b1x:G (3.07) BS01 rna N/A GO:0000049 ... A0QS97 N/A
    940037 9b1x:H (3.07) BS01 rna N/A GO:0003735 ... A0QSG3 N/A
    940038 9b1x:I (3.07) BS01 rna N/A GO:0003723 ... A0QSP9 N/A
    940039 9b1x:J (3.07) BS01 rna N/A GO:0000049 ... A0QSD0 N/A
    940040 9b1x:K (3.07) BS01 rna N/A GO:0003735 ... A0QSL6 N/A
    940041 9b1x:L (3.07) BS01 rna N/A GO:0000049 ... A0QS96 N/A
    940042 9b1x:M (3.07) BS01 rna N/A GO:0000049 ... A0QSL5 N/A
    940043 9b1x:N (3.07) BS01 rna N/A GO:0003735 ... A0QSG2 N/A
    940044 9b1x:N (3.07) BS02 MG N/A GO:0003735 ... A0QSG2 N/A
    940045 9b1x:N (3.07) BS03 ZN N/A GO:0003735 ... A0QSG2 N/A
    940046 9b1x:O (3.07) BS01 rna N/A GO:0003735 ... A0QVQ3 N/A
    940047 9b1x:O (3.07) BS02 rna N/A GO:0003735 ... A0QVQ3 N/A
    940048 9b1x:P (3.07) BS01 rna N/A GO:0003735 ... A0QV37 N/A
    940049 9b1x:P (3.07) BS02 MG N/A GO:0003735 ... A0QV37 N/A
    940050 9b1x:Q (3.07) BS01 rna N/A GO:0003735 ... A0QSE0 N/A
    940051 9b1x:R (3.07) BS01 rna N/A GO:0003735 ... A0R7F7 N/A
    940052 9b1x:R (3.07) BS02 ZN N/A GO:0003735 ... A0R7F7 N/A
    940053 9b1x:S (3.07) BS01 rna N/A GO:0000028 ... A0QSD5 N/A
    940054 9b1x:T (3.07) BS01 rna N/A GO:0003723 ... A0R102 N/A
    940055 9b1x:V (3.07) BS01 rna N/A GO:0003735 ... A0QVB8 N/A
    940056 9b1x:Z (3.07) BS01 rna N/A GO:0002181 ... A0QSD4 N/A
    940057 9b1x:Z (3.07) BS02 MG N/A GO:0002181 ... A0QSD4 N/A
    940058 9b1x:Z (3.07) BS03 MG N/A GO:0002181 ... A0QSD4 N/A
    940059 9b1x:Z (3.07) BS04 MG N/A GO:0002181 ... A0QSD4 N/A
    940060 9b1x:Z (3.07) BS05 MG N/A GO:0002181 ... A0QSD4 N/A
    940061 9b1x:Z (3.07) BS06 MG N/A GO:0002181 ... A0QSD4 N/A
    940062 9b1x:Z (3.07) BS07 MG N/A GO:0002181 ... A0QSD4 N/A
    940063 9b1x:Z (3.07) BS08 MG N/A GO:0002181 ... A0QSD4 N/A
    940064 9b1x:a (3.07) BS01 rna N/A GO:0003735 ... A0QSD1 N/A
    940065 9b1x:b (3.07) BS01 rna N/A GO:0003735 ... A0QSD2 N/A
    940066 9b1x:b (3.07) BS02 MG N/A GO:0003735 ... A0QSD2 N/A
    940067 9b1x:c (3.07) BS01 rna N/A GO:0000049 ... A0QSG1 N/A
    940068 9b1x:c (3.07) BS02 rna N/A GO:0000049 ... A0QSG1 N/A
    940069 9b1x:d (3.07) BS01 rna N/A GO:0002181 ... A0QSG4 N/A
    940070 9b1x:e (3.07) BS01 rna N/A GO:0003735 ... A0QS45 N/A
    940071 9b1x:f (3.07) BS01 rna N/A GO:0003729 ... A0QSP8 N/A
    940072 9b1x:g (3.07) BS01 rna N/A GO:0003735 ... A0QSF9 N/A
    940073 9b1x:g (3.07) BS02 rna N/A GO:0003735 ... A0QSF9 N/A
    940074 9b1x:h (3.07) BS01 rna N/A GO:0003735 ... A0QSG8 N/A
    940075 9b1x:i (3.07) BS01 rna N/A GO:0003735 ... A0QSD8 N/A
    940076 9b1x:i (3.07) BS02 MG N/A GO:0003735 ... A0QSD8 N/A
    940077 9b1x:j (3.07) BS01 rna N/A GO:0003735 ... A0QSL9 N/A
    940078 9b1x:k (3.07) BS01 rna N/A GO:0003735 ... A0QSG5 N/A
    940079 9b1x:k (3.07) BS02 rna N/A GO:0003735 ... A0QSG5 N/A
    940080 9b1x:l (3.07) BS01 rna N/A GO:0003735 ... A0QV42 N/A
    940081 9b1x:m (3.07) BS01 rna N/A GO:0000027 ... A0QYU6 N/A
    940082 9b1x:n (3.07) BS01 rna N/A GO:0003723 ... A0R151 N/A
    940083 9b1x:o (3.07) BS01 rna N/A GO:0003735 ... A0QSD6 N/A
    940084 9b1x:p (3.07) BS01 rna N/A GO:0003735 ... A0QSD3 N/A
    940085 9b1x:p (3.07) BS02 MG N/A GO:0003735 ... A0QSD3 N/A
    940086 9b1x:q (3.07) BS01 rna N/A GO:0003723 ... A0QSG0 N/A
    940087 9b1x:r (3.07) BS01 rna N/A GO:0003723 ... A0R3D2 N/A
    940088 9b1x:s (3.07) BS01 rna N/A GO:0003735 ... A0R150 N/A
    940089 9b1x:t (3.07) BS01 rna N/A GO:0003735 ... A0QV03 N/A
    940090 9b1x:t (3.07) BS02 MG N/A GO:0003735 ... A0QV03 N/A
    940091 9b1x:t (3.07) BS03 ZN N/A GO:0003735 ... A0QV03 N/A
    940092 9b1x:u (3.07) BS01 rna N/A GO:0003735 ... A0QSD9 N/A
    940093 9b1x:v (3.07) BS01 rna N/A GO:0003735 ... A0QS62 N/A
    940094 9b1x:w (3.07) BS01 rna N/A GO:0003735 ... A0QSG7 N/A
    940095 9b1x:x (3.07) BS01 rna N/A GO:0003735 ... A0R3I9 N/A
    940096 9b1x:y (3.07) BS01 rna N/A GO:0003735 ... A0QS39 N/A
    940097 9b1x:y (3.07) BS02 ZN N/A GO:0003735 ... A0QS39 N/A
    940098 9b1x:z (3.07) BS01 rna N/A GO:0003735 ... A0R7K0 N/A
    940099 9b1y:1 (2.47) BS01 rna N/A GO:0003735 ... A0QYU7 N/A
    940100 9b1y:2 (2.47) BS01 rna N/A GO:0003735 ... A0QSL4 N/A
    940101 9b1y:2 (2.47) BS02 ZN N/A GO:0003735 ... A0QSL4 N/A
    940102 9b1y:C (2.47) BS01 rna N/A GO:0003676 ... A0QSD7 N/A
    940103 9b1y:D (2.47) BS01 rna N/A GO:0003723 ... A0QSL7 N/A
    940104 9b1y:E (2.47) BS01 rna N/A GO:0003723 ... A0QSG6 N/A
    940105 9b1y:E (2.47) BS02 MG N/A GO:0003723 ... A0QSG6 N/A
    940106 9b1y:F (2.47) BS01 rna N/A GO:0003735 ... A0R7F9 N/A
    940107 9b1y:G (2.47) BS01 rna N/A GO:0000049 ... A0QS97 N/A
    940108 9b1y:H (2.47) BS01 rna N/A GO:0003735 ... A0QSG3 N/A
    940109 9b1y:I (2.47) BS01 rna N/A GO:0003735 ... A0QSP9 N/A
    940110 9b1y:J (2.47) BS01 rna N/A GO:0000049 ... A0QSD0 N/A
    940111 9b1y:K (2.47) BS01 rna N/A GO:0003735 ... A0QSL6 N/A
    940112 9b1y:L (2.47) BS01 rna N/A GO:0000049 ... A0QS96 N/A
    940113 9b1y:M (2.47) BS01 rna N/A GO:0000049 ... A0QSL5 N/A
    940114 9b1y:N (2.47) BS01 rna N/A GO:0003735 ... A0QSG2 N/A
    940115 9b1y:N (2.47) BS02 MG N/A GO:0003735 ... A0QSG2 N/A
    940116 9b1y:N (2.47) BS03 ZN N/A GO:0003735 ... A0QSG2 N/A
    940117 9b1y:O (2.47) BS01 rna N/A GO:0003735 ... A0QVQ3 N/A
    940118 9b1y:O (2.47) BS02 rna N/A GO:0003735 ... A0QVQ3 N/A
    940119 9b1y:P (2.47) BS01 rna N/A GO:0003735 ... A0QV37 N/A
    940120 9b1y:Q (2.47) BS01 rna N/A GO:0003735 ... A0QSE0 N/A
    940121 9b1y:Q (2.47) BS02 MG N/A GO:0003735 ... A0QSE0 N/A
    940122 9b1y:Q (2.47) BS03 MG N/A GO:0003735 ... A0QSE0 N/A
    940123 9b1y:R (2.47) BS01 rna N/A GO:0003735 ... A0R7F7 N/A
    940124 9b1y:R (2.47) BS02 ZN N/A GO:0003735 ... A0R7F7 N/A
    940125 9b1y:T (2.47) BS01 rna N/A GO:0003723 ... A0R102 N/A
    940126 9b1y:V (2.47) BS01 rna N/A GO:0003735 ... A0QVB8 N/A
    940127 9b1y:Z (2.47) BS01 rna N/A GO:0002181 ... A0QSD4 N/A
    940128 9b1y:Z (2.47) BS02 MG N/A GO:0002181 ... A0QSD4 N/A
    940129 9b1y:Z (2.47) BS03 MG N/A GO:0002181 ... A0QSD4 N/A
    940130 9b1y:Z (2.47) BS04 MG N/A GO:0002181 ... A0QSD4 N/A
    940131 9b1y:Z (2.47) BS05 MG N/A GO:0002181 ... A0QSD4 N/A
    940132 9b1y:Z (2.47) BS06 MG N/A GO:0002181 ... A0QSD4 N/A
    940133 9b1y:Z (2.47) BS07 MG N/A GO:0002181 ... A0QSD4 N/A
    940134 9b1y:a (2.47) BS01 rna N/A GO:0003735 ... A0QSD1 N/A
    940135 9b1y:b (2.47) BS01 rna N/A GO:0003735 ... A0QSD2 N/A
    940136 9b1y:b (2.47) BS02 MG N/A GO:0003735 ... A0QSD2 N/A
    940137 9b1y:c (2.47) BS01 rna N/A GO:0000049 ... A0QSG1 N/A
    940138 9b1y:c (2.47) BS02 rna N/A GO:0000049 ... A0QSG1 N/A
    940139 9b1y:c (2.47) BS03 MG N/A GO:0000049 ... A0QSG1 N/A
    940140 9b1y:d (2.47) BS01 rna N/A GO:0002181 ... A0QSG4 N/A
    940141 9b1y:e (2.47) BS01 rna N/A GO:0003735 ... A0QS45 N/A
    940142 9b1y:f (2.47) BS01 rna N/A GO:0003729 ... A0QSP8 N/A
    940143 9b1y:g (2.47) BS01 rna N/A GO:0003735 ... A0QSF9 N/A
    940144 9b1y:g (2.47) BS02 rna N/A GO:0003735 ... A0QSF9 N/A
    940145 9b1y:h (2.47) BS01 rna N/A GO:0003735 ... A0QSG8 N/A
    940146 9b1y:i (2.47) BS01 rna N/A GO:0003735 ... A0QSD8 N/A
    940147 9b1y:i (2.47) BS02 MG N/A GO:0003735 ... A0QSD8 N/A
    940148 9b1y:i (2.47) BS03 MG N/A GO:0003735 ... A0QSD8 N/A
    940149 9b1y:j (2.47) BS01 rna N/A GO:0003735 ... A0QSL9 N/A
    940150 9b1y:k (2.47) BS01 rna N/A GO:0003735 ... A0QSG5 N/A
    940151 9b1y:k (2.47) BS02 rna N/A GO:0003735 ... A0QSG5 N/A
    940152 9b1y:l (2.47) BS01 rna N/A GO:0003735 ... A0QV42 N/A
    940153 9b1y:l (2.47) BS02 rna N/A GO:0003735 ... A0QV42 N/A
    940154 9b1y:m (2.47) BS01 rna N/A GO:0000027 ... A0QYU6 N/A
    940155 9b1y:n (2.47) BS01 rna N/A GO:0003723 ... A0R151 N/A
    940156 9b1y:n (2.47) BS02 MG N/A GO:0003723 ... A0R151 N/A
    940157 9b1y:o (2.47) BS01 rna N/A GO:0003735 ... A0QSD6 N/A
    940158 9b1y:p (2.47) BS01 rna N/A GO:0003735 ... A0QSD3 N/A
    940159 9b1y:p (2.47) BS02 MG N/A GO:0003735 ... A0QSD3 N/A
    940160 9b1y:q (2.47) BS01 rna N/A GO:0003723 ... A0QSG0 N/A
    940161 9b1y:r (2.47) BS01 rna N/A GO:0003735 ... A0R3D2 N/A
    940162 9b1y:r (2.47) BS02 rna N/A GO:0003735 ... A0R3D2 N/A
    940163 9b1y:s (2.47) BS01 rna N/A GO:0003735 ... A0R150 N/A
    940164 9b1y:t (2.47) BS01 rna N/A GO:0003735 ... A0QV03 N/A
    940165 9b1y:t (2.47) BS02 MG N/A GO:0003735 ... A0QV03 N/A
    940166 9b1y:t (2.47) BS03 ZN N/A GO:0003735 ... A0QV03 N/A
    940167 9b1y:u (2.47) BS01 rna N/A GO:0003735 ... A0QSD9 N/A
    940168 9b1y:v (2.47) BS01 rna N/A GO:0003735 ... A0QS62 N/A
    940169 9b1y:w (2.47) BS01 rna N/A GO:0003735 ... A0QSG7 N/A
    940170 9b1y:w (2.47) BS02 rna N/A GO:0003735 ... A0QSG7 N/A
    940171 9b1y:x (2.47) BS01 rna N/A GO:0003735 ... A0R3I9 N/A
    940172 9b1y:y (2.47) BS01 rna N/A GO:0003735 ... A0QS39 N/A
    940173 9b1y:y (2.47) BS02 ZN N/A GO:0003735 ... A0QS39 N/A
    940174 9b1y:z (2.47) BS01 rna N/A GO:0003735 ... A0R7K0 N/A
    940175 9b20:A (1.55) BS01 AMP 3.6.1.13 GO:0005829 ... A0A0H3GVQ7 N/A
    940176 9b20:A (1.55) BS02 MG 3.6.1.13 GO:0005829 ... A0A0H3GVQ7 N/A
    940177 9b20:A (1.55) BS03 AMP 3.6.1.13 GO:0005829 ... A0A0H3GVQ7 N/A
    940178 9b20:B (1.55) BS01 AMP 3.6.1.13 GO:0005829 ... A0A0H3GVQ7 N/A
    940179 9b20:B (1.55) BS02 AMP 3.6.1.13 GO:0005829 ... A0A0H3GVQ7 N/A
    940180 9b20:B (1.55) BS03 MG 3.6.1.13 GO:0005829 ... A0A0H3GVQ7 N/A
    940181 9b20:B (1.55) BS04 MG 3.6.1.13 GO:0005829 ... A0A0H3GVQ7 N/A
    940182 9b21:A (1.6) BS01 AR6 3.6.1.13 GO:0005829 ... A0A0H3GVQ7 N/A
    940183 9b21:A (1.6) BS02 MG 3.6.1.13 GO:0005829 ... A0A0H3GVQ7 N/A
    940184 9b21:A (1.6) BS03 MG 3.6.1.13 GO:0005829 ... A0A0H3GVQ7 N/A
    940185 9b21:A (1.6) BS04 AR6 3.6.1.13 GO:0005829 ... A0A0H3GVQ7 N/A
    940186 9b21:B (1.6) BS01 AR6 3.6.1.13 GO:0005829 ... A0A0H3GVQ7 N/A
    940187 9b21:B (1.6) BS02 AR6 3.6.1.13 GO:0005829 ... A0A0H3GVQ7 N/A
    940188 9b21:B (1.6) BS03 MG 3.6.1.13 GO:0005829 ... A0A0H3GVQ7 N/A
    940189 9b21:B (1.6) BS04 MG 3.6.1.13 GO:0005829 ... A0A0H3GVQ7 N/A
    940190 9b22:A (1.3) BS01 MG 3.6.1.13 GO:0005829 ... A0A0H3GVQ7 N/A
    940191 9b22:A (1.3) BS02 MG 3.6.1.13 GO:0005829 ... A0A0H3GVQ7 N/A
    940192 9b22:A (1.3) BS03 AR6 3.6.1.13 GO:0005829 ... A0A0H3GVQ7 N/A
    940193 9b22:A (1.3) BS04 AR6 3.6.1.13 GO:0005829 ... A0A0H3GVQ7 N/A
    940194 9b22:A (1.3) BS05 AMP 3.6.1.13 GO:0005829 ... A0A0H3GVQ7 N/A
    940195 9b22:B (1.3) BS01 AR6 3.6.1.13 GO:0005829 ... A0A0H3GVQ7 N/A
    940196 9b22:B (1.3) BS02 MG 3.6.1.13 GO:0005829 ... A0A0H3GVQ7 N/A
    940197 9b22:B (1.3) BS03 MG 3.6.1.13 GO:0005829 ... A0A0H3GVQ7 N/A
    940198 9b22:B (1.3) BS04 AR6 3.6.1.13 GO:0005829 ... A0A0H3GVQ7 N/A
    940199 9b22:B (1.3) BS05 AMP 3.6.1.13 GO:0005829 ... A0A0H3GVQ7 N/A
    940200 9b24:1 (2.47) BS01 rna N/A GO:0003735 ... A0QYU7 N/A

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).