SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    940201 9ha7:T (4.37) BS01 rna N/A N/A P0ADZ0 39794318
    940202 9ha7:T (4.37) BS02 peptide N/A N/A P0ADZ0 39794318
    940203 9ha7:U (4.37) BS01 rna N/A N/A P60624 39794318
    940204 9ha7:V (4.37) BS01 rna N/A N/A P68919 39794318
    940205 9ha7:W (4.37) BS01 rna N/A N/A P0A7L8 39794318
    940206 9ha7:W (4.37) BS02 rna N/A N/A P0A7L8 39794318
    940207 9ha7:Y (4.37) BS01 rna N/A N/A P0A7M6 39794318
    940208 9ha7:Z (4.37) BS01 rna N/A N/A P0AG51 39794318
    940209 9ha7:Z (4.37) BS02 rna N/A N/A P0AG51 39794318
    940210 9hai:0 (3.01) BS01 rna N/A N/A P0A7N4 39794318
    940211 9hai:2 (3.01) BS01 rna N/A N/A P0A7P5 39794318
    940212 9hai:D (3.01) BS01 rna N/A N/A P60438 39794318
    940213 9hai:E (3.01) BS01 rna N/A N/A P60723 39794318
    940214 9hai:J (3.01) BS01 rna N/A N/A P0AA10 39794318
    940215 9hai:K (3.01) BS01 rna N/A N/A P0ADY3 39794318
    940216 9hai:L (3.01) BS01 rna N/A N/A P02413 39794318
    940217 9hai:N (3.01) BS01 rna N/A N/A P0AG44 39794318
    940218 9hai:P (3.01) BS01 rna N/A N/A P0A7K6 39794318
    940219 9hai:Q (3.01) BS01 rna N/A N/A P0A7L3 39794318
    940220 9hai:R (3.01) BS01 rna N/A N/A P0AG48 39794318
    940221 9hai:S (3.01) BS01 rna N/A N/A P61175 39794318
    940222 9hai:T (3.01) BS01 rna N/A N/A P0ADZ0 39794318
    940223 9hai:U (3.01) BS01 rna N/A N/A P60624 39794318
    940224 9hai:Y (3.01) BS01 rna N/A N/A P0A7M6 39794318
    940225 9hai:Z (3.01) BS01 rna N/A N/A P0AG51 39794318
    940226 9hak:A (1.25) BS01 A1ITI N/A N/A P0DTC1 N/A
    940227 9hak:B (1.25) BS01 A1ITI N/A N/A P0DTC1 N/A
    940228 9hal:D (4.49) BS01 rna N/A N/A P60438 39794318
    940229 9hal:E (4.49) BS01 rna N/A N/A P60723 39794318
    940230 9hal:J (4.49) BS01 rna N/A N/A P0AA10 39794318
    940231 9hal:L (4.49) BS01 rna N/A N/A P02413 39794318
    940232 9hal:N (4.49) BS01 rna N/A N/A P0AG44 39794318
    940233 9hal:Q (4.49) BS01 rna N/A N/A P0A7L3 39794318
    940234 9hal:R (4.49) BS01 rna N/A N/A P0AG48 39794318
    940235 9hal:U (4.49) BS01 rna N/A N/A P60624 39794318
    940236 9ham:D (5.06) BS01 rna N/A N/A P60438 39794318
    940237 9ham:E (5.06) BS01 rna N/A N/A P60723 39794318
    940238 9ham:G (5.06) BS01 rna N/A N/A P0AG55 39794318
    940239 9ham:J (5.06) BS01 rna N/A N/A P0AA10 39794318
    940240 9ham:K (5.06) BS01 rna N/A N/A P0ADY3 39794318
    940241 9ham:L (5.06) BS01 rna N/A N/A P02413 39794318
    940242 9ham:N (5.06) BS01 rna N/A N/A P0AG44 39794318
    940243 9ham:P (5.06) BS01 rna N/A N/A P0A7K6 39794318
    940244 9ham:Q (5.06) BS01 rna N/A N/A P0A7L3 39794318
    940245 9ham:R (5.06) BS01 rna N/A N/A P0AG48 39794318
    940246 9ham:U (5.06) BS01 rna N/A N/A P60624 39794318
    940247 9ham:Z (5.06) BS01 rna N/A N/A P0AG51 39794318
    940248 9hbo:A (2.45) BS01 A1IUK N/A N/A P00533 39869768
    940249 9hbo:B (2.45) BS01 A1IUK N/A N/A P00533 39869768
    940250 9hbq:A (1.795) BS01 A1ITO N/A N/A P0DTD1 N/A
    940251 9hc1:A (1.493) BS01 A1ITP N/A N/A P0DTD1 N/A
    940252 9hc1:B (1.493) BS01 A1ITP N/A N/A P0DTD1 N/A
    940253 9hc2:A (1.27) BS01 GTQ N/A GO:0003796 ... P00698 N/A
    940254 9hcj:A1 (30.0) BS01 peptide N/A N/A N/A 39729993
    940255 9hcj:D0 (30.0) BS01 peptide N/A N/A N/A 39729993
    940256 9hcj:D1 (30.0) BS01 peptide N/A N/A N/A 39729993
    940257 9hcj:D2 (30.0) BS01 peptide N/A N/A N/A 39729993
    940258 9hcj:D3 (30.0) BS01 peptide N/A N/A N/A 39729993
    940259 9hd8:A (1.696) BS01 A1ITV N/A N/A P0DTD1 N/A
    940260 9hdc:A (1.794) BS01 A1ITW N/A N/A P0DTD1 N/A
    940261 9hdj:A (2.05) BS01 A1IT1 N/A N/A P0DTD1 N/A
    940262 9hdj:B (2.05) BS01 A1IT1 N/A N/A P0DTD1 N/A
    940263 9hdn:A (1.77) BS01 A1IT2 N/A N/A P0DTD1 N/A
    940264 9hdn:B (1.77) BS01 A1IT2 N/A N/A P0DTD1 N/A
    940265 9hdn:C (1.77) BS01 A1IT2 N/A N/A P0DTD1 N/A
    940266 9hdn:D (1.77) BS01 A1IT2 N/A N/A P0DTD1 N/A
    940267 9hhw:A (3.0) BS01 A1IU7 N/A N/A Q5TCY1 39716901
    940268 9hin:A (1.55) BS01 A1IU9 N/A N/A Q9C029 N/A
    940269 9hjh:A (1.2) BS01 A1IVK N/A N/A P0DTC1 N/A
    940270 9hjh:B (1.2) BS01 A1IVK N/A N/A P0DTC1 N/A
    940271 9hkv:A (2.88) BS01 NAD N/A N/A Q9I685 N/A
    940272 9hkv:B (2.88) BS01 NAD N/A N/A Q9I685 N/A
    940273 9hkv:B (2.88) BS02 NAD N/A N/A Q9I685 N/A
    940274 9hkv:C (2.88) BS01 NAD N/A N/A Q9I685 N/A
    940275 9hkv:C (2.88) BS02 NAD N/A N/A Q9I685 N/A
    940276 9hkv:D (2.88) BS01 NAD N/A N/A Q9I685 N/A
    940277 9hkw:A (2.85) BS01 NAD N/A N/A Q9I685 N/A
    940278 9hkw:B (2.85) BS01 NAD N/A N/A Q9I685 N/A
    940279 9hkw:B (2.85) BS02 NAD N/A N/A Q9I685 N/A
    940280 9hkw:C (2.85) BS01 NAD N/A N/A Q9I685 N/A
    940281 9hkw:C (2.85) BS02 NAD N/A N/A Q9I685 N/A
    940282 9hkw:D (2.85) BS01 NAD N/A N/A Q9I685 N/A
    940283 9hkw:D (2.85) BS02 ADN N/A N/A Q9I685 N/A
    940284 9hkx:A (2.83) BS01 NAD N/A N/A Q9I685 N/A
    940285 9hkx:B (2.83) BS01 NAD N/A N/A Q9I685 N/A
    940286 9hkx:C (2.83) BS01 NAD N/A N/A Q9I685 N/A
    940287 9hkx:C (2.83) BS02 NAD N/A N/A Q9I685 N/A
    940288 9hkx:C (2.83) BS03 ADN N/A N/A Q9I685 N/A
    940289 9hkx:D (2.83) BS01 NAD N/A N/A Q9I685 N/A
    940290 9hkx:D (2.83) BS02 ADN N/A N/A Q9I685 N/A
    940291 9hky:A (2.89) BS01 NAD N/A N/A Q9I685 N/A
    940292 9hky:A (2.89) BS02 NAD N/A N/A Q9I685 N/A
    940293 9hky:B (2.89) BS01 NAD N/A N/A Q9I685 N/A
    940294 9hky:B (2.89) BS02 ADN N/A N/A Q9I685 N/A
    940295 9hky:C (2.89) BS01 NAD N/A N/A Q9I685 N/A
    940296 9hky:C (2.89) BS02 NAD N/A N/A Q9I685 N/A
    940297 9hky:D (2.89) BS01 NAD N/A N/A Q9I685 N/A
    940298 9hky:D (2.89) BS02 NAD N/A N/A Q9I685 N/A
    940299 9hky:D (2.89) BS03 ADN N/A N/A Q9I685 N/A
    940300 9hkz:A (3.1) BS01 NAD N/A N/A Q9I685 N/A
    940301 9hkz:A (3.1) BS02 NAD N/A N/A Q9I685 N/A
    940302 9hkz:B (3.1) BS01 NAD N/A N/A Q9I685 N/A
    940303 9hkz:B (3.1) BS02 NAD N/A N/A Q9I685 N/A
    940304 9hkz:C (3.1) BS01 NAD N/A N/A Q9I685 N/A
    940305 9hkz:C (3.1) BS02 NAD N/A N/A Q9I685 N/A
    940306 9hkz:D (3.1) BS01 NAD N/A N/A Q9I685 N/A
    940307 9hkz:D (3.1) BS02 ADN N/A N/A Q9I685 N/A
    940308 9hm9:A (3.4) BS01 ADP N/A N/A N/A 39928047
    940309 9hm9:B (3.4) BS01 ADP N/A N/A N/A 39928047
    940310 9hm9:C (3.4) BS01 peptide N/A N/A N/A 39928047
    940311 9hm9:C (3.4) BS02 ADP N/A N/A N/A 39928047
    940312 9hm9:D (3.4) BS01 ADP N/A N/A N/A 39928047
    940313 9hm9:E (3.4) BS01 ADP N/A N/A N/A 39928047
    940314 9hmu:A (1.85) BS01 CNC N/A N/A D5EK51 N/A
    940315 9hmu:A (1.85) BS02 CA N/A N/A D5EK51 N/A
    940316 9hmu:B (1.85) BS01 CNC N/A N/A D5EK51 N/A
    940317 9hmu:B (1.85) BS02 CA N/A N/A D5EK51 N/A
    940318 9hmu:C (1.85) BS01 CNC N/A N/A D5EK51 N/A
    940319 9hmu:C (1.85) BS02 CA N/A N/A D5EK51 N/A
    940320 9hnw:A (3.04) BS01 ZN N/A N/A O94782 N/A
    940321 9hq9:A (1.6) BS01 A1H97 N/A N/A P09651 39763864
    940322 9hqj:A (1.6) BS01 A1H9T N/A N/A P09651 39763864
    940323 9hql:A (1.75) BS01 VZM N/A N/A P09651 39763864
    940324 9hsb:A (1.81) BS01 A1IWR N/A N/A Q8IEE9 N/A
    940325 9hsb:A (1.81) BS02 A1IWR N/A N/A Q8IEE9 N/A
    940326 9hsc:A (2.18) BS01 AEF N/A N/A Q8IEE9 N/A
    940327 9hsd:A (2.18) BS01 NNW N/A N/A Q8IEE9 N/A
    940328 9hsd:A (2.18) BS02 NNW N/A N/A Q8IEE9 N/A
    940329 9hse:A (1.96) BS01 A1IWU N/A N/A Q8IEE9 N/A
    940330 9hsf:A (2.1) BS01 A1IWT N/A N/A Q8IEE9 N/A
    940331 9hsg:A (2.36) BS01 CDC N/A N/A Q8IEE9 N/A
    940332 9hsh:A (1.8) BS01 CTP N/A N/A Q8IEE9 N/A
    940333 9hsh:A (1.8) BS02 MN N/A N/A Q8IEE9 N/A
    940334 9hsi:A (1.97) BS01 PC N/A N/A Q8IEE9 N/A
    940335 9hsj:A (1.76) BS01 A1IWV N/A N/A Q8IEE9 N/A
    940336 9hsj:A (1.76) BS02 A1IWV N/A N/A Q8IEE9 N/A
    940337 9hsk:A (2.15) BS01 T5Y N/A N/A Q8IEE9 N/A
    940338 9hsl:A (2.15) BS01 S3V N/A N/A Q8IEE9 N/A
    940339 9hsm:A (2.05) BS01 A1IWW N/A N/A Q8IEE9 N/A
    940340 9hsn:A (2.09) BS01 9L6 N/A N/A Q8IEE9 N/A
    940341 9hso:A (2.3) BS01 0PY N/A N/A Q8IEE9 N/A
    940342 9hsp:A (2.09) BS01 9OI N/A N/A Q8IEE9 N/A
    940343 9hsp:A (2.09) BS02 9OI N/A N/A Q8IEE9 N/A
    940344 9hsq:A (1.77) BS01 9NN N/A N/A Q8IEE9 N/A
    940345 9hsq:A (1.77) BS02 9NN N/A N/A Q8IEE9 N/A
    940346 9hsr:A (2.42) BS01 XFV N/A N/A Q8IEE9 N/A
    940347 9hsr:A (2.42) BS02 XFV N/A N/A Q8IEE9 N/A
    940348 9hst:A (2.39) BS01 XJJ N/A N/A Q8IEE9 N/A
    940349 9hsv:A (1.68) BS01 IRU N/A N/A Q8IEE9 N/A
    940350 9hsv:A (1.68) BS02 IRU N/A N/A Q8IEE9 N/A
    940351 9hsv:A (1.68) BS03 IRU N/A N/A Q8IEE9 N/A
    940352 9hsw:A (1.76) BS01 A1IWS N/A N/A Q8IEE9 N/A
    940353 9hsx:A (2.23) BS01 HVK N/A N/A Q8IEE9 N/A
    940354 9hsx:A (2.23) BS02 HVK N/A N/A Q8IEE9 N/A
    940355 9hsz:A (1.96) BS01 4AP N/A N/A Q8IEE9 N/A
    940356 9hsz:A (1.96) BS02 4AP N/A N/A Q8IEE9 N/A
    940357 9hsz:A (1.96) BS03 4AP N/A N/A Q8IEE9 N/A
    940358 9hvp:A (2.8) BS01 0E9 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16
    GO:0004190 ... P12497 2200122
    940359 9hvp:B (2.8) BS01 0E9 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16
    GO:0004190 ... P12497 2200122
    940360 9i2o:A (1.72) BS01 MGT N/A N/A Q6DNL8 N/A
    940361 9i5r:A (2.62) BS01 peptide N/A N/A Q01497 N/A
    940362 9i68:A (1.505) BS01 peptide N/A N/A Q12834 N/A
    940363 9i69:A (1.463) BS01 peptide N/A N/A Q12834 N/A
    940364 9i6a:A (1.915) BS01 peptide N/A N/A Q12834 N/A
    940365 9ica:A (3.0) BS01 dna 2.7.7.7
    4.2.99.-
    4.2.99.18
    GO:0001701 ... P06746 8841120
    940366 9ica:A (3.0) BS02 dna 2.7.7.7
    4.2.99.-
    4.2.99.18
    GO:0001701 ... P06746 8841120
    940367 9ica:A (3.0) BS03 MN 2.7.7.7
    4.2.99.-
    4.2.99.18
    GO:0001701 ... P06746 8841120
    940368 9ica:A (3.0) BS04 STP 2.7.7.7
    4.2.99.-
    4.2.99.18
    GO:0001701 ... P06746 8841120
    940369 9icb:A (3.2) BS01 dna 2.7.7.7
    4.2.99.-
    4.2.99.18
    GO:0001701 ... P06746 8841120
    940370 9icb:A (3.2) BS02 dna 2.7.7.7
    4.2.99.-
    4.2.99.18
    GO:0001701 ... P06746 8841120
    940371 9icb:A (3.2) BS03 CO 2.7.7.7
    4.2.99.-
    4.2.99.18
    GO:0001701 ... P06746 8841120
    940372 9icb:A (3.2) BS04 DTP 2.7.7.7
    4.2.99.-
    4.2.99.18
    GO:0001701 ... P06746 8841120
    940373 9icc:A (3.1) BS01 dna 2.7.7.7
    4.2.99.-
    4.2.99.18
    GO:0001701 ... P06746 8841120
    940374 9icc:A (3.1) BS02 dna 2.7.7.7
    4.2.99.-
    4.2.99.18
    GO:0001701 ... P06746 8841120
    940375 9icc:A (3.1) BS03 DTP 2.7.7.7
    4.2.99.-
    4.2.99.18
    GO:0001701 ... P06746 8841120
    940376 9icd:A (2.5) BS01 NAP 1.1.1.42 GO:0000287 ... P08200 1888729 MOAD: Kd=125uM
    940377 9ice:A (3.3) BS01 dna 2.7.7.7
    4.2.99.-
    4.2.99.18
    GO:0001701 ... P06746 8841120
    940378 9ice:A (3.3) BS02 dna 2.7.7.7
    4.2.99.-
    4.2.99.18
    GO:0001701 ... P06746 8841120
    940379 9icf:A (3.0) BS01 dna 2.7.7.7
    4.2.99.-
    4.2.99.18
    GO:0001701 ... P06746 8841119
    940380 9icf:A (3.0) BS02 dna 2.7.7.7
    4.2.99.-
    4.2.99.18
    GO:0001701 ... P06746 8841119
    940381 9icf:A (3.0) BS03 ZN 2.7.7.7
    4.2.99.-
    4.2.99.18
    GO:0001701 ... P06746 8841119
    940382 9icf:A (3.0) BS04 DTP 2.7.7.7
    4.2.99.-
    4.2.99.18
    GO:0001701 ... P06746 8841119
    940383 9icg:A (3.0) BS01 dna 2.7.7.7
    4.2.99.-
    4.2.99.18
    GO:0001701 ... P06746 8841120
    940384 9icg:A (3.0) BS02 dna 2.7.7.7
    4.2.99.-
    4.2.99.18
    GO:0001701 ... P06746 8841120
    940385 9icg:A (3.0) BS03 ZN 2.7.7.7
    4.2.99.-
    4.2.99.18
    GO:0001701 ... P06746 8841120
    940386 9icg:A (3.0) BS04 DCP 2.7.7.7
    4.2.99.-
    4.2.99.18
    GO:0001701 ... P06746 8841120
    940387 9ich:A (2.9) BS01 dna 2.7.7.7
    4.2.99.-
    4.2.99.18
    GO:0001701 ... P06746 8841120
    940388 9ich:A (2.9) BS02 dna 2.7.7.7
    4.2.99.-
    4.2.99.18
    GO:0001701 ... P06746 8841120
    940389 9ich:A (2.9) BS03 ZN 2.7.7.7
    4.2.99.-
    4.2.99.18
    GO:0001701 ... P06746 8841120
    940390 9ich:A (2.9) BS04 DGT 2.7.7.7
    4.2.99.-
    4.2.99.18
    GO:0001701 ... P06746 8841120
    940391 9ici:A (3.1) BS01 dna 2.7.7.7
    4.2.99.-
    4.2.99.18
    GO:0001701 ... P06746 8841120
    940392 9ici:A (3.1) BS02 dna 2.7.7.7
    4.2.99.-
    4.2.99.18
    GO:0001701 ... P06746 8841120
    940393 9ici:A (3.1) BS03 ZN 2.7.7.7
    4.2.99.-
    4.2.99.18
    GO:0001701 ... P06746 8841120
    940394 9icj:A (3.1) BS01 dna 2.7.7.7
    4.2.99.-
    4.2.99.18
    GO:0001701 ... P06746 8841120
    940395 9icj:A (3.1) BS02 dna 2.7.7.7
    4.2.99.-
    4.2.99.18
    GO:0001701 ... P06746 8841120
    940396 9ick:A (2.7) BS01 dna 2.7.7.7
    4.2.99.-
    4.2.99.18
    GO:0001701 ... P06746 8841119
    940397 9ick:A (2.7) BS02 dna 2.7.7.7
    4.2.99.-
    4.2.99.18
    GO:0001701 ... P06746 8841119
    940398 9icl:A (2.8) BS01 dna 2.7.7.7
    4.2.99.-
    4.2.99.18
    GO:0001701 ... P06746 8841120
    940399 9icl:A (2.8) BS02 dna 2.7.7.7
    4.2.99.-
    4.2.99.18
    GO:0001701 ... P06746 8841120
    940400 9icl:A (2.8) BS03 MN 2.7.7.7
    4.2.99.-
    4.2.99.18
    GO:0001701 ... P06746 8841120

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).