SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    940401 9icl:A (2.8) BS04 MN 2.7.7.7
    4.2.99.-
    4.2.99.18
    GO:0001701 ... P06746 8841120
    940402 9icm:A (2.9) BS01 dna 2.7.7.7
    4.2.99.-
    4.2.99.18
    GO:0001701 ... P06746 8841118
    940403 9icm:A (2.9) BS02 dna 2.7.7.7
    4.2.99.-
    4.2.99.18
    GO:0001701 ... P06746 8841118
    940404 9icn:A (3.0) BS01 dna 2.7.7.7
    4.2.99.-
    4.2.99.18
    GO:0001701 ... P06746 8841119
    940405 9icn:A (3.0) BS02 dna 2.7.7.7
    4.2.99.-
    4.2.99.18
    GO:0001701 ... P06746 8841119
    940406 9icn:A (3.0) BS03 DCT 2.7.7.7
    4.2.99.-
    4.2.99.18
    GO:0001701 ... P06746 8841119
    940407 9ico:A (2.9) BS01 dna 2.7.7.7
    4.2.99.-
    4.2.99.18
    GO:0001701 ... P06746 8841119
    940408 9ico:A (2.9) BS02 dna 2.7.7.7
    4.2.99.-
    4.2.99.18
    GO:0001701 ... P06746 8841119
    940409 9icp:A (3.1) BS01 dna 2.7.7.7
    4.2.99.-
    4.2.99.18
    GO:0001701 ... P06746 8841119
    940410 9icp:A (3.1) BS02 dna 2.7.7.7
    4.2.99.-
    4.2.99.18
    GO:0001701 ... P06746 8841119
    940411 9icq:A (2.9) BS01 dna 2.7.7.7
    4.2.99.-
    4.2.99.18
    GO:0001701 ... P06746 8841119
    940412 9icq:A (2.9) BS02 dna 2.7.7.7
    4.2.99.-
    4.2.99.18
    GO:0001701 ... P06746 8841119
    940413 9icq:A (2.9) BS03 MN 2.7.7.7
    4.2.99.-
    4.2.99.18
    GO:0001701 ... P06746 8841119
    940414 9icq:A (2.9) BS04 DTP 2.7.7.7
    4.2.99.-
    4.2.99.18
    GO:0001701 ... P06746 8841119
    940415 9icr:A (3.0) BS01 dna 2.7.7.7
    4.2.99.-
    4.2.99.18
    GO:0001701 ... P06746 8841119
    940416 9icr:A (3.0) BS02 dna 2.7.7.7
    4.2.99.-
    4.2.99.18
    GO:0001701 ... P06746 8841119
    940417 9icr:A (3.0) BS03 MN 2.7.7.7
    4.2.99.-
    4.2.99.18
    GO:0001701 ... P06746 8841119
    940418 9icr:A (3.0) BS04 MN 2.7.7.7
    4.2.99.-
    4.2.99.18
    GO:0001701 ... P06746 8841119
    940419 9icr:A (3.0) BS05 DCP 2.7.7.7
    4.2.99.-
    4.2.99.18
    GO:0001701 ... P06746 8841119
    940420 9ics:A (2.9) BS01 dna 2.7.7.7
    4.2.99.-
    4.2.99.18
    GO:0001701 ... P06746 8841119
    940421 9ics:A (2.9) BS02 dna 2.7.7.7
    4.2.99.-
    4.2.99.18
    GO:0001701 ... P06746 8841119
    940422 9ics:A (2.9) BS03 MN 2.7.7.7
    4.2.99.-
    4.2.99.18
    GO:0001701 ... P06746 8841119
    940423 9ics:A (2.9) BS04 DCT 2.7.7.7
    4.2.99.-
    4.2.99.18
    GO:0001701 ... P06746 8841119
    940424 9ict:A (3.0) BS01 dna 2.7.7.7
    4.2.99.-
    4.2.99.18
    GO:0001701 ... P06746 8841119
    940425 9ict:A (3.0) BS02 dna 2.7.7.7
    4.2.99.-
    4.2.99.18
    GO:0001701 ... P06746 8841119
    940426 9ict:A (3.0) BS03 MN 2.7.7.7
    4.2.99.-
    4.2.99.18
    GO:0001701 ... P06746 8841119
    940427 9ict:A (3.0) BS04 DGT 2.7.7.7
    4.2.99.-
    4.2.99.18
    GO:0001701 ... P06746 8841119
    940428 9icu:A (2.9) BS01 dna 2.7.7.7
    4.2.99.-
    4.2.99.18
    GO:0001701 ... P06746 8841119
    940429 9icu:A (2.9) BS02 dna 2.7.7.7
    4.2.99.-
    4.2.99.18
    GO:0001701 ... P06746 8841119
    940430 9icu:A (2.9) BS03 TTP 2.7.7.7
    4.2.99.-
    4.2.99.18
    GO:0001701 ... P06746 8841119 BindingDB: IC50=1400nM
    940431 9icv:A (2.7) BS01 dna 2.7.7.7
    4.2.99.-
    4.2.99.18
    GO:0001701 ... P06746 8841119
    940432 9icv:A (2.7) BS02 dna 2.7.7.7
    4.2.99.-
    4.2.99.18
    GO:0001701 ... P06746 8841119
    940433 9icv:A (2.7) BS03 ZN 2.7.7.7
    4.2.99.-
    4.2.99.18
    GO:0001701 ... P06746 8841119
    940434 9icv:A (2.7) BS04 DTP 2.7.7.7
    4.2.99.-
    4.2.99.18
    GO:0001701 ... P06746 8841119
    940435 9icw:A (2.6) BS01 dna 2.7.7.7
    4.2.99.-
    4.2.99.18
    GO:0001701 ... P06746 8841118
    940436 9icw:A (2.6) BS02 dna 2.7.7.7
    4.2.99.-
    4.2.99.18
    GO:0001701 ... P06746 8841118
    940437 9icx:A (2.6) BS01 dna 2.7.7.7
    4.2.99.-
    4.2.99.18
    GO:0001701 ... P06746 8841118
    940438 9icx:A (2.6) BS02 dna 2.7.7.7
    4.2.99.-
    4.2.99.18
    GO:0001701 ... P06746 8841118
    940439 9icy:A (3.0) BS01 dna 2.7.7.7
    4.2.99.-
    4.2.99.18
    GO:0001701 ... P06746 8841118
    940440 9icy:A (3.0) BS02 dna 2.7.7.7
    4.2.99.-
    4.2.99.18
    GO:0001701 ... P06746 8841118
    940441 9iie:A (3.14) BS01 BMA N/A N/A P0DOX5 N/A
    940442 9iie:A (3.14) BS02 GAL N/A N/A P0DOX5 N/A
    940443 9iie:B (3.14) BS01 BMA N/A N/A P0DOX5 N/A
    940444 9iif:A (2.16) BS01 A1L2L N/A N/A Q9NWT6 39291299
    940445 9iif:A (2.16) BS02 ZN N/A N/A Q9NWT6 39291299
    940446 9iil:A (2.2) BS01 NAD N/A GO:0000166 ... A0A059ZTK9 N/A
    940447 9iil:B (2.2) BS01 NAD N/A GO:0000166 ... A0A059ZTK9 N/A
    940448 9iil:C (2.2) BS01 NAD N/A GO:0000166 ... A0A059ZTK9 N/A
    940449 9iil:D (2.2) BS01 NAD N/A GO:0000166 ... A0A059ZTK9 N/A
    940450 9iim:A (2.74) BS01 NAD N/A GO:0000166 ... A0A059ZTK9 N/A
    940451 9iim:B (2.74) BS01 NAD N/A GO:0000166 ... A0A059ZTK9 N/A
    940452 9iim:C (2.74) BS01 NAD N/A GO:0000166 ... A0A059ZTK9 N/A
    940453 9iim:D (2.74) BS01 NAD N/A GO:0000166 ... A0A059ZTK9 N/A
    940454 9iiw:R (3.15) BS01 A1AEI N/A GO:0001580 ... Q9NYV8 38969802
    940455 9iiw:R (3.15) BS02 A1AEI N/A GO:0001580 ... Q9NYV8 38969802
    940456 9iix:R (2.89) BS01 A1AEI N/A GO:0001580 ... Q9NYV8 38969802
    940457 9iix:R (2.89) BS02 A1AEI N/A GO:0001580 ... Q9NYV8 38969802
    940458 9iiy:A (3.0) BS01 rna N/A N/A D5MRY8 39814893
    940459 9iiy:A (3.0) BS02 rna N/A N/A D5MRY8 39814893
    940460 9iiz:A (3.8) BS01 rna N/A N/A D5MRY8 39814893
    940461 9iiz:A (3.8) BS02 rna N/A N/A D5MRY8 39814893
    940462 9ij0:A (3.2) BS01 rna N/A GO:0003723 ... Q8CDG1 39814893
    940463 9ij0:A (3.2) BS02 rna N/A GO:0003723 ... Q8CDG1 39814893
    940464 9ij0:A (3.2) BS03 MG N/A GO:0003723 ... Q8CDG1 39814893
    940465 9ij0:A (3.2) BS04 MG N/A GO:0003723 ... Q8CDG1 39814893
    940466 9ij1:A (3.2) BS01 rna N/A GO:0003723 ... Q8CDG1 39814893
    940467 9ij1:A (3.2) BS02 rna N/A GO:0003723 ... Q8CDG1 39814893
    940468 9ij1:A (3.2) BS03 MG N/A GO:0003723 ... Q8CDG1 39814893
    940469 9ij2:A (3.9) BS01 rna N/A GO:0003723 ... Q8CDG1 39814893
    940470 9ij2:A (3.9) BS02 rna N/A GO:0003723 ... Q8CDG1 39814893
    940471 9ij3:A (2.6) BS01 rna N/A GO:0003723 ... Q8CDG1 39814893
    940472 9ij3:A (2.6) BS02 rna N/A GO:0003723 ... Q8CDG1 39814893
    940473 9ij3:A (2.6) BS03 MN N/A GO:0003723 ... Q8CDG1 39814893
    940474 9ij4:A (2.7) BS01 rna N/A N/A Q8CDG1 39814893
    940475 9ij4:A (2.7) BS02 rna N/A N/A Q8CDG1 39814893
    940476 9ij4:A (2.7) BS03 MG N/A N/A Q8CDG1 39814893
    940477 9ij5:A (2.8) BS01 rna N/A GO:0003723 ... Q8CDG1 39814893
    940478 9ij5:A (2.8) BS02 rna N/A GO:0003723 ... Q8CDG1 39814893
    940479 9ij6:A (2.4) BS01 AMP N/A GO:0000166 ... A0A059ZTK9 N/A
    940480 9ij6:B (2.4) BS01 AMP N/A GO:0000166 ... A0A059ZTK9 N/A
    940481 9ij6:C (2.4) BS01 AMP N/A GO:0000166 ... A0A059ZTK9 N/A
    940482 9ij6:C (2.4) BS02 MG N/A GO:0000166 ... A0A059ZTK9 N/A
    940483 9ij6:D (2.4) BS01 AMP N/A GO:0000166 ... A0A059ZTK9 N/A
    940484 9ij9:R (2.7) BS01 A1AEI N/A GO:0001580 ... Q9NYV8 38969802
    940485 9ij9:R (2.7) BS02 CLR N/A GO:0001580 ... Q9NYV8 38969802
    940486 9ija:R (3.05) BS01 A1AEI N/A GO:0001580 ... Q9NYV8 38969802
    940487 9ija:R (3.05) BS02 CLR N/A GO:0001580 ... Q9NYV8 38969802
    940488 9ijd:R (2.76) BS01 CAU N/A GO:0004930 ... P13945 39046191
    940489 9ije:R (2.34) BS01 ALE N/A GO:0004930 ... P13945 39046191
    940490 9ijm:A (3.32) BS01 A1L2K N/A N/A O06874 39793043
    940491 9ijm:B (3.32) BS01 A1L2K N/A N/A O06874 39793043
    940492 9ijm:E (3.32) BS01 A1L2K N/A N/A O06873 39793043
    940493 9ijn:A (1.81) BS01 A1D9I N/A N/A A0A2R3XZB7 39712456
    940494 9ijp:C (3.1) BS01 7TT N/A GO:0000122 ... P37840 N/A
    940495 9ijp:L (3.1) BS01 7TT N/A GO:0000122 ... P37840 N/A
    940496 9ijy:A (2.64) BS01 PO4 N/A N/A Q9UBH6 39814721
    940497 9ijy:B (2.64) BS01 PO4 N/A N/A Q9UBH6 39814721
    940498 9ijz:A (2.91) BS01 PO4 N/A N/A Q9UBH6 39814721
    940499 9ijz:B (2.91) BS01 PO4 N/A N/A Q9UBH6 39814721
    940500 9ik1:A (2.61) BS01 A1L2M N/A GO:0001614 ... P56373 39102524
    940501 9ik1:A (2.61) BS02 ATP N/A GO:0001614 ... P56373 39102524
    940502 9ik1:B (2.61) BS01 A1L2M N/A GO:0001614 ... P56373 39102524
    940503 9ik1:B (2.61) BS02 ATP N/A GO:0001614 ... P56373 39102524
    940504 9ik1:C (2.61) BS01 ATP N/A GO:0001614 ... P56373 39102524
    940505 9ik2:A (1.8) BS01 A1D9H N/A GO:0008233 ... P0DTD1 N/A
    940506 9ik4:A (3.34) BS01 IHP N/A N/A Q93ZF5 39838070
    940507 9ik4:A (3.34) BS02 PO4 N/A N/A Q93ZF5 39838070
    940508 9ik4:B (3.34) BS01 PO4 N/A N/A Q93ZF5 39838070
    940509 9ik4:B (3.34) BS02 IHP N/A N/A Q93ZF5 39838070
    940510 9ikm:A (3.5) BS01 FUB N/A N/A N/A 39739783
    940511 9ikm:A (3.5) BS02 AHR N/A N/A N/A 39739783
    940512 9ikm:A (3.5) BS03 GAL N/A N/A N/A 39739783
    940513 9ikm:A (3.5) BS04 FUB N/A N/A N/A 39739783
    940514 9ikm:A (3.5) BS05 FUB N/A N/A N/A 39739783
    940515 9ikm:A (3.5) BS06 FUB N/A N/A N/A 39739783
    940516 9ikm:A (3.5) BS07 FUB N/A N/A N/A 39739783
    940517 9ikm:A (3.5) BS08 FUB N/A N/A N/A 39739783
    940518 9ikm:A (3.5) BS09 GAL N/A N/A N/A 39739783
    940519 9ikm:A (3.5) BS10 FUB N/A N/A N/A 39739783
    940520 9ikm:A (3.5) BS11 FUB N/A N/A N/A 39739783
    940521 9ikm:A (3.5) BS12 AHR N/A N/A N/A 39739783
    940522 9ikm:A (3.5) BS13 BMA N/A N/A N/A 39739783
    940523 9ikm:A (3.5) BS14 FUB N/A N/A N/A 39739783
    940524 9ikm:A (3.5) BS15 FUB N/A N/A N/A 39739783
    940525 9ikm:A (3.5) BS16 FUB N/A N/A N/A 39739783
    940526 9ikm:A (3.5) BS17 FUB N/A N/A N/A 39739783
    940527 9ikm:A (3.5) BS18 FUB N/A N/A N/A 39739783
    940528 9ikm:A (3.5) BS19 GAL N/A N/A N/A 39739783
    940529 9ikm:A (3.5) BS20 FUB N/A N/A N/A 39739783
    940530 9ikm:A (3.5) BS21 FUB N/A N/A N/A 39739783
    940531 9ikq:A (1.93) BS01 GTP N/A N/A P61006 39374890
    940532 9ikq:A (1.93) BS02 MG N/A N/A P61006 39374890
    940533 9ikq:B (1.93) BS01 GTP N/A N/A P61006 39374890
    940534 9ikq:B (1.93) BS02 MG N/A N/A P61006 39374890
    940535 9ild:A (2.179) BS01 peptide N/A GO:0006508 ... P0DTF3 N/A
    940536 9ild:A (2.179) BS02 ZN N/A GO:0006508 ... P0DTF3 N/A
    940537 9ima:A (2.65) BS01 CLR N/A GO:0004930 ... Q9NZD1 39181182
    940538 9ima:A (2.65) BS02 CLR N/A GO:0004930 ... Q9NZD1 39181182
    940539 9ima:A (2.65) BS03 CLR N/A GO:0004930 ... Q9NZD1 39181182
    940540 9ima:B (2.65) BS01 CLR N/A GO:0004930 ... Q9NZD1 39181182
    940541 9ima:B (2.65) BS02 CLR N/A GO:0004930 ... Q9NZD1 39181182
    940542 9ima:B (2.65) BS03 CLR N/A GO:0004930 ... Q9NZD1 39181182
    940543 9imb:A (2.9) BS01 rna N/A N/A Q8TEA1 39862858
    940544 9imb:A (2.9) BS02 SFG N/A N/A Q8TEA1 39862858
    940545 9imb:B (2.9) BS01 rna N/A N/A Q8TEA1 39862858
    940546 9imb:B (2.9) BS02 SFG N/A N/A Q8TEA1 39862858
    940547 9imj:A (2.8) BS01 MG N/A GO:0003677 ... A0A346FJ89 N/A
    940548 9imj:A (2.8) BS02 ANP N/A GO:0003677 ... A0A346FJ89 N/A
    940549 9imp:A (2.87) BS01 peptide N/A N/A Q9Z340 39218187
    940550 9imp:B (2.87) BS01 peptide N/A N/A Q9Z340 39218187
    940551 9imp:C (2.87) BS01 peptide N/A N/A Q9Z340 39218187
    940552 9imp:D (2.87) BS01 peptide N/A N/A Q9Z340 39218187
    940553 9imp:E (2.87) BS01 peptide N/A N/A Q9Z340 39218187
    940554 9imp:F (2.87) BS01 peptide N/A N/A Q9Z340 39218187
    940555 9ind:A (2.88) BS01 MAN N/A N/A P06756 39743547
    940556 9ink:A (2.7) BS01 BCR N/A GO:0005615 ... A0A6N3ISN1 39383875
    940557 9ink:B (2.7) BS01 BCR N/A GO:0005615 ... A0A6N3ISN1 39383875
    940558 9inr:A (1.93) BS01 A1D9K N/A GO:0000413 ... Q13526 39229909
    940559 9inr:A (1.93) BS02 A1D9K N/A GO:0000413 ... Q13526 39229909
    940560 9inr:B (1.93) BS01 A1D9K N/A GO:0000413 ... Q13526 39229909
    940561 9inr:B (1.93) BS02 A1D9K N/A GO:0000413 ... Q13526 39229909
    940562 9ins:B (1.7) BS01 peptide ? GO:0005179 ... P01315 1504238
    940563 9int:A (1.56) BS01 GAL N/A GO:0004553 ... A0A1B1Y771 39214858
    940564 9int:A (1.56) BS02 9RN N/A GO:0004553 ... A0A1B1Y771 39214858
    940565 9int:A (1.56) BS03 G4S N/A GO:0004553 ... A0A1B1Y771 39214858
    940566 9inv:A (1.61) BS01 HCC N/A N/A P53355 39243455
    940567 9inw:A (1.52) BS01 A1L2V N/A N/A P53355 39243455
    940568 9inx:A (1.72) BS01 A1L2W N/A N/A P53355 39243455
    940569 9ipu:A (4.3) BS01 dna N/A GO:0000786 ... Q71DI3 N/A
    940570 9ipu:A (4.3) BS02 dna N/A GO:0000786 ... Q71DI3 N/A
    940571 9ipu:B (4.3) BS01 dna N/A GO:0000781 ... P62805 N/A
    940572 9ipu:B (4.3) BS02 dna N/A GO:0000781 ... P62805 N/A
    940573 9ipu:C (4.3) BS01 dna N/A GO:0000786 ... P04908 N/A
    940574 9ipu:C (4.3) BS02 dna N/A GO:0000786 ... P04908 N/A
    940575 9ipu:D (4.3) BS01 dna N/A GO:0000786 ... O60814 N/A
    940576 9ipu:D (4.3) BS02 dna N/A GO:0000786 ... O60814 N/A
    940577 9ipu:E (4.3) BS01 dna N/A GO:0000786 ... Q71DI3 N/A
    940578 9ipu:E (4.3) BS02 dna N/A GO:0000786 ... Q71DI3 N/A
    940579 9ipu:F (4.3) BS01 dna N/A GO:0000781 ... P62805 N/A
    940580 9ipu:F (4.3) BS02 dna N/A GO:0000781 ... P62805 N/A
    940581 9ipu:G (4.3) BS01 dna N/A GO:0000786 ... P04908 N/A
    940582 9ipu:G (4.3) BS02 dna N/A GO:0000786 ... P04908 N/A
    940583 9ipu:H (4.3) BS01 dna N/A GO:0000786 ... O60814 N/A
    940584 9ipu:H (4.3) BS02 dna N/A GO:0000786 ... O60814 N/A
    940585 9ipu:I (4.3) BS01 dna N/A GO:0000785 ... P07305 N/A
    940586 9ipu:I (4.3) BS02 dna N/A GO:0000785 ... P07305 N/A
    940587 9ipu:L (4.3) BS01 ZN N/A N/A Q8IYW5 N/A
    940588 9ipu:L (4.3) BS02 ZN N/A N/A Q8IYW5 N/A
    940589 9ipw:K (3.0) BS01 A1L2Z N/A N/A Q15369 N/A
    940590 9iq9:A () BS01 MN N/A N/A N/A N/A
    940591 9iq9:A () BS02 MN N/A N/A N/A N/A
    940592 9iq9:B () BS01 CU1 N/A N/A N/A N/A
    940593 9iq9:B () BS02 CU1 N/A N/A N/A N/A
    940594 9iq9:B () BS03 CU1 N/A N/A N/A N/A
    940595 9iqt:R (2.9) BS01 NIO N/A GO:0001781 ... Q8TDS4 39299383
    940596 9ir3:A (3.19) BS01 ZN N/A GO:0001172 ... Q997F0 39627254
    940597 9ir3:A (3.19) BS02 ZN N/A GO:0001172 ... Q997F0 39627254
    940598 9ir4:A (3.01) BS01 ZN N/A GO:0001172 ... Q997F0 39627254
    940599 9ir4:A (3.01) BS02 ZN N/A GO:0001172 ... Q997F0 39627254
    940600 9irm:A (1.81) BS01 WBW N/A N/A N/A 39615486

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).