SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    940401 9b2s:K (3.01) BS01 dna N/A GO:0004672 ... Q8TF76 39979508
    940402 9b2s:K (3.01) BS02 dna N/A GO:0004672 ... Q8TF76 39979508
    940403 9b2t:A (2.99) BS01 dna N/A GO:0000786 ... P84233 39979508
    940404 9b2t:A (2.99) BS02 dna N/A GO:0000786 ... P84233 39979508
    940405 9b2t:B (2.99) BS01 dna N/A GO:0000786 ... P62799 39979508
    940406 9b2t:C (2.99) BS01 dna N/A GO:0000786 ... P06897 39979508
    940407 9b2t:C (2.99) BS02 dna N/A GO:0000786 ... P06897 39979508
    940408 9b2t:D (2.99) BS01 dna N/A GO:0000786 ... P02281 39979508
    940409 9b2t:D (2.99) BS02 dna N/A GO:0000786 ... P02281 39979508
    940410 9b2t:E (2.99) BS01 dna N/A GO:0000786 ... P84233 39979508
    940411 9b2t:E (2.99) BS02 dna N/A GO:0000786 ... P84233 39979508
    940412 9b2t:F (2.99) BS01 dna N/A GO:0000786 ... P62799 39979508
    940413 9b2t:G (2.99) BS01 dna N/A GO:0000786 ... P06897 39979508
    940414 9b2t:H (2.99) BS01 dna N/A GO:0000786 ... P02281 39979508
    940415 9b2t:H (2.99) BS02 dna N/A GO:0000786 ... P02281 39979508
    940416 9b2t:K (2.99) BS01 dna N/A GO:0004672 ... Q8TF76 39979508
    940417 9b2t:K (2.99) BS02 dna N/A GO:0004672 ... Q8TF76 39979508
    940418 9b2u:K (3.64) BS01 peptide N/A GO:0004672 ... Q8TF76 39979508
    940419 9b2y:A (2.05) BS01 FAD N/A GO:0003824 ... Q84HF5 N/A
    940420 9b2y:B (2.05) BS01 FAD N/A GO:0003824 ... Q84HF5 N/A
    940421 9b2y:B (2.05) BS02 A1AI5 N/A GO:0003824 ... Q84HF5 N/A
    940422 9b2z:A (2.83) BS01 AMP N/A N/A Q5ZSJ0 39694182
    940423 9b2z:B (2.83) BS01 LAB N/A GO:0000776 ... P60709 39694182
    940424 9b2z:B (2.83) BS02 ATP N/A GO:0000776 ... P60709 39694182
    940425 9b33:E (4.07) BS01 ZN ? GO:0005509 ... C0HJY1 38778115
    940426 9b33:E (4.07) BS02 CA ? GO:0005509 ... C0HJY1 38778115
    940427 9b33:F (4.07) BS01 ZN ? GO:0005509 ... C0HJY1 38778115
    940428 9b33:F (4.07) BS02 CA ? GO:0005509 ... C0HJY1 38778115
    940429 9b34:E (3.58) BS01 ZN ? GO:0030246 ... P02866 38778115
    940430 9b34:E (3.58) BS02 CA ? GO:0030246 ... P02866 38778115
    940431 9b34:F (3.58) BS01 ZN ? GO:0030246 ... P02866 38778115
    940432 9b34:F (3.58) BS02 CA ? GO:0030246 ... P02866 38778115
    940433 9b35:A (3.4) BS01 GLU ? GO:0005216 ... P42260 38778115
    940434 9b35:B (3.4) BS01 GLU ? GO:0005216 ... P42260 38778115
    940435 9b35:C (3.4) BS01 GLU ? GO:0005216 ... P42260 38778115
    940436 9b35:D (3.4) BS01 GLU ? GO:0005216 ... P42260 38778115
    940437 9b36:A (4.29) BS01 GAL ? GO:0005216 ... P42260 38778115
    940438 9b36:A (4.29) BS02 2J9 ? GO:0005216 ... P42260 38778115
    940439 9b36:A (4.29) BS03 GLU ? GO:0005216 ... P42260 38778115
    940440 9b36:A (4.29) BS04 CLR ? GO:0005216 ... P42260 38778115
    940441 9b36:A (4.29) BS05 CLR ? GO:0005216 ... P42260 38778115
    940442 9b36:A (4.29) BS06 2J9 ? GO:0005216 ... P42260 38778115
    940443 9b36:B (4.29) BS01 2J9 ? GO:0005216 ... P42260 38778115
    940444 9b36:B (4.29) BS02 GLU ? GO:0005216 ... P42260 38778115
    940445 9b36:B (4.29) BS03 2J9 ? GO:0005216 ... P42260 38778115
    940446 9b36:C (4.29) BS01 MAN ? GO:0005216 ... P42260 38778115
    940447 9b36:C (4.29) BS02 2J9 ? GO:0005216 ... P42260 38778115
    940448 9b36:C (4.29) BS03 CLR ? GO:0005216 ... P42260 38778115
    940449 9b36:C (4.29) BS04 2J9 ? GO:0005216 ... P42260 38778115
    940450 9b36:C (4.29) BS05 GLU ? GO:0005216 ... P42260 38778115
    940451 9b36:C (4.29) BS06 CLR ? GO:0005216 ... P42260 38778115
    940452 9b36:D (4.29) BS01 2J9 ? GO:0005216 ... P42260 38778115
    940453 9b36:D (4.29) BS02 2J9 ? GO:0005216 ... P42260 38778115
    940454 9b36:D (4.29) BS03 GLU ? GO:0005216 ... P42260 38778115
    940455 9b36:E (4.29) BS01 MAN ? GO:0005509 ... C0HJY1 38778115
    940456 9b36:E (4.29) BS02 ZN ? GO:0005509 ... C0HJY1 38778115
    940457 9b36:E (4.29) BS03 CA ? GO:0005509 ... C0HJY1 38778115
    940458 9b36:F (4.29) BS01 MAN ? GO:0005509 ... C0HJY1 38778115
    940459 9b36:F (4.29) BS02 ZN ? GO:0005509 ... C0HJY1 38778115
    940460 9b36:F (4.29) BS03 CA ? GO:0005509 ... C0HJY1 38778115
    940461 9b36:G (4.29) BS01 MAN ? GO:0005509 ... C0HJY1 38778115
    940462 9b36:G (4.29) BS02 ZN ? GO:0005509 ... C0HJY1 38778115
    940463 9b36:G (4.29) BS03 CA ? GO:0005509 ... C0HJY1 38778115
    940464 9b36:H (4.29) BS01 MAN ? GO:0005509 ... C0HJY1 38778115
    940465 9b36:H (4.29) BS02 ZN ? GO:0005509 ... C0HJY1 38778115
    940466 9b36:H (4.29) BS03 CA ? GO:0005509 ... C0HJY1 38778115
    940467 9b37:A (6.66) BS01 2J9 ? GO:0005216 ... P42260 38778115
    940468 9b37:A (6.66) BS02 GLU ? GO:0005216 ... P42260 38778115
    940469 9b37:A (6.66) BS03 CLR ? GO:0005216 ... P42260 38778115
    940470 9b37:A (6.66) BS04 CLR ? GO:0005216 ... P42260 38778115
    940471 9b37:A (6.66) BS05 2J9 ? GO:0005216 ... P42260 38778115
    940472 9b37:B (6.66) BS01 2J9 ? GO:0005216 ... P42260 38778115
    940473 9b37:B (6.66) BS02 GLU ? GO:0005216 ... P42260 38778115
    940474 9b37:B (6.66) BS03 2J9 ? GO:0005216 ... P42260 38778115
    940475 9b37:C (6.66) BS01 2J9 ? GO:0005216 ... P42260 38778115
    940476 9b37:C (6.66) BS02 CLR ? GO:0005216 ... P42260 38778115
    940477 9b37:C (6.66) BS03 2J9 ? GO:0005216 ... P42260 38778115
    940478 9b37:C (6.66) BS04 GLU ? GO:0005216 ... P42260 38778115
    940479 9b37:C (6.66) BS05 CLR ? GO:0005216 ... P42260 38778115
    940480 9b37:D (6.66) BS01 2J9 ? GO:0005216 ... P42260 38778115
    940481 9b37:D (6.66) BS02 CLR ? GO:0005216 ... P42260 38778115
    940482 9b37:D (6.66) BS03 2J9 ? GO:0005216 ... P42260 38778115
    940483 9b37:D (6.66) BS04 GLU ? GO:0005216 ... P42260 38778115
    940484 9b37:E (6.66) BS01 ZN ? GO:0005509 ... C0HJY1 38778115
    940485 9b37:E (6.66) BS02 CA ? GO:0005509 ... C0HJY1 38778115
    940486 9b37:F (6.66) BS01 MAN ? GO:0005509 ... C0HJY1 38778115
    940487 9b37:F (6.66) BS02 ZN ? GO:0005509 ... C0HJY1 38778115
    940488 9b37:F (6.66) BS03 CA ? GO:0005509 ... C0HJY1 38778115
    940489 9b38:A (3.36) BS01 GLU ? GO:0005216 ... P42260 38778115
    940490 9b38:A (3.36) BS02 MAN ? GO:0005216 ... P42260 38778115
    940491 9b38:B (3.36) BS01 GLU ? GO:0005216 ... P42260 38778115
    940492 9b38:C (3.36) BS01 GLU ? GO:0005216 ... P42260 38778115
    940493 9b38:C (3.36) BS02 MAN ? GO:0005216 ... P42260 38778115
    940494 9b38:D (3.36) BS01 GLU ? GO:0005216 ... P42260 38778115
    940495 9b39:A (3.84) BS01 MAN ? GO:0005216 ... P42260 38778115
    940496 9b39:A (3.84) BS02 GLU ? GO:0005216 ... P42260 38778115
    940497 9b39:B (3.84) BS01 GLU ? GO:0005216 ... P42260 38778115
    940498 9b39:C (3.84) BS01 GLU ? GO:0005216 ... P42260 38778115
    940499 9b39:D (3.84) BS01 GLU ? GO:0005216 ... P42260 38778115
    940500 9b3b:A (1.62) BS01 A1AIM N/A GO:0005634 ... Q9NUW8 N/A
    940501 9b3b:B (1.62) BS01 A1AIM N/A GO:0005634 ... Q9NUW8 N/A
    940502 9b3d:A (3.41) BS01 ADP 3.6.4.- GO:0000287 ... P68135 38843827
    940503 9b3d:B (3.41) BS01 ADP 3.6.4.- GO:0000287 ... P68135 38843827
    940504 9b3d:C (3.41) BS01 ADP 3.6.4.- GO:0000287 ... P68135 38843827
    940505 9b3d:C (3.41) BS02 MG 3.6.4.- GO:0000287 ... P68135 38843827
    940506 9b3d:D (3.41) BS01 ADP 3.6.4.- GO:0000287 ... P68135 38843827
    940507 9b3d:E (3.41) BS01 ADP 3.6.4.- GO:0000287 ... P68135 38843827
    940508 9b3d:F (3.41) BS01 ADP 3.6.4.- GO:0000287 ... P68135 38843827
    940509 9b3e:B (2.0) BS01 SE N/A N/A N/A 40327719
    940510 9b3i:D (2.88) BS01 GTP N/A GO:0003924 ... P32835 39601790
    940511 9b3j:A (2.73) BS01 ATP N/A GO:0005524 ... A0AA88HWD9 40108410
    940512 9b3j:B (2.73) BS01 ATP N/A GO:0005524 ... A0AA88HWD9 40108410
    940513 9b3j:C (2.73) BS01 ATP N/A GO:0005524 ... A0AA88HWD9 40108410
    940514 9b3j:D (2.73) BS01 ATP N/A GO:0005524 ... N/A 40108410
    940515 9b3j:E (2.73) BS01 ATP N/A GO:0005524 ... N/A 40108410
    940516 9b3n:A (1.5) BS01 BGC N/A GO:0005509 ... P46531 39488203
    940517 9b3n:A (1.5) BS02 XYP N/A GO:0005509 ... P46531 39488203
    940518 9b3n:A (1.5) BS03 BGC N/A GO:0005509 ... P46531 39488203
    940519 9b3n:A (1.5) BS04 FUC N/A GO:0005509 ... P46531 39488203
    940520 9b3n:A (1.5) BS05 FUC N/A GO:0005509 ... P46531 39488203
    940521 9b3n:A (1.5) BS06 FUC N/A GO:0005509 ... P46531 39488203
    940522 9b3n:A (1.5) BS07 CA N/A GO:0005509 ... P46531 39488203
    940523 9b3n:A (1.5) BS08 CA N/A GO:0005509 ... P46531 39488203
    940524 9b3n:A (1.5) BS09 CA N/A GO:0005509 ... P46531 39488203
    940525 9b3n:A (1.5) BS10 CA N/A GO:0005509 ... P46531 39488203
    940526 9b3p:A (3.0) BS01 dna ? GO:0000776 ... P84243 38920622
    940527 9b3p:A (3.0) BS02 dna ? GO:0000776 ... P84243 38920622
    940528 9b3p:B (3.0) BS01 dna ? GO:0000786 ... P62799 38920622
    940529 9b3p:B (3.0) BS02 dna ? GO:0000786 ... P62799 38920622
    940530 9b3p:C (3.0) BS01 dna ? GO:0000786 ... P0C0S6 38920622
    940531 9b3p:C (3.0) BS02 dna ? GO:0000786 ... P0C0S6 38920622
    940532 9b3p:D (3.0) BS01 dna ? GO:0000786 ... P02281 38920622
    940533 9b3p:D (3.0) BS02 dna ? GO:0000786 ... P02281 38920622
    940534 9b3p:E (3.0) BS01 dna ? GO:0000776 ... P84243 38920622
    940535 9b3p:E (3.0) BS02 dna ? GO:0000776 ... P84243 38920622
    940536 9b3p:F (3.0) BS01 dna ? GO:0000786 ... P62799 38920622
    940537 9b3p:F (3.0) BS02 dna ? GO:0000786 ... P62799 38920622
    940538 9b3p:G (3.0) BS01 dna ? GO:0000786 ... P0C0S6 38920622
    940539 9b3p:G (3.0) BS02 dna ? GO:0000786 ... P0C0S6 38920622
    940540 9b3p:H (3.0) BS01 dna ? GO:0000786 ... P02281 38920622
    940541 9b3p:H (3.0) BS02 dna ? GO:0000786 ... P02281 38920622
    940542 9b3q:A (3.6) BS01 ADP 3.6.4.- GO:0000146 ... P68032 N/A
    940543 9b3q:D (3.6) BS01 ADP 3.6.4.- GO:0000146 ... P68032 N/A
    940544 9b3q:E (3.6) BS01 ADP 3.6.4.- GO:0000146 ... P68032 N/A
    940545 9b3r:A (3.5) BS01 ADP 3.6.4.- GO:0000146 ... P68032 39981516
    940546 9b3r:D (3.5) BS01 ADP 3.6.4.- GO:0000146 ... P68032 39981516
    940547 9b3r:E (3.5) BS01 ADP 3.6.4.- GO:0000146 ... P68032 39981516
    940548 9b3u:A (2.4) BS01 RTO N/A GO:0005216 ... Q9WUD2 39972168
    940549 9b3u:A (2.4) BS02 RTO N/A GO:0005216 ... Q9WUD2 39972168
    940550 9b3u:B (2.4) BS01 RTO N/A GO:0005216 ... Q9WUD2 39972168
    940551 9b3u:B (2.4) BS02 RTO N/A GO:0005216 ... Q9WUD2 39972168
    940552 9b3u:C (2.4) BS01 RTO N/A GO:0005216 ... Q9WUD2 39972168
    940553 9b3u:C (2.4) BS02 RTO N/A GO:0005216 ... Q9WUD2 39972168
    940554 9b3u:D (2.4) BS01 RTO N/A GO:0005216 ... Q9WUD2 39972168
    940555 9b3u:D (2.4) BS02 RTO N/A GO:0005216 ... Q9WUD2 39972168
    940556 9b3x:A (3.2) BS01 FZ4 N/A GO:0005216 ... Q9WUD2 39972168
    940557 9b3x:A (3.2) BS02 FZ4 N/A GO:0005216 ... Q9WUD2 39972168
    940558 9b3x:B (3.2) BS01 FZ4 N/A GO:0005216 ... Q9WUD2 39972168
    940559 9b3x:B (3.2) BS02 FZ4 N/A GO:0005216 ... Q9WUD2 39972168
    940560 9b3x:C (3.2) BS01 FZ4 N/A GO:0005216 ... Q9WUD2 39972168
    940561 9b3x:C (3.2) BS02 FZ4 N/A GO:0005216 ... Q9WUD2 39972168
    940562 9b3x:D (3.2) BS01 FZ4 N/A GO:0005216 ... Q9WUD2 39972168
    940563 9b3x:D (3.2) BS02 FZ4 N/A GO:0005216 ... Q9WUD2 39972168
    940564 9b3y:A (2.7) BS01 RTO N/A GO:0005216 ... Q9WUD2 39972168
    940565 9b3y:A (2.7) BS02 RTO N/A GO:0005216 ... Q9WUD2 39972168
    940566 9b3y:B (2.7) BS01 RTO N/A GO:0005216 ... Q9WUD2 39972168
    940567 9b3y:B (2.7) BS02 RTO N/A GO:0005216 ... Q9WUD2 39972168
    940568 9b3y:C (2.7) BS01 RTO N/A GO:0005216 ... Q9WUD2 39972168
    940569 9b3y:C (2.7) BS02 RTO N/A GO:0005216 ... Q9WUD2 39972168
    940570 9b3y:D (2.7) BS01 RTO N/A GO:0005216 ... Q9WUD2 39972168
    940571 9b3y:D (2.7) BS02 RTO N/A GO:0005216 ... Q9WUD2 39972168
    940572 9b3z:A (3.0) BS01 FZ4 N/A GO:0005216 ... Q9WUD2 39972168
    940573 9b3z:A (3.0) BS02 RTO N/A GO:0005216 ... Q9WUD2 39972168
    940574 9b3z:A (3.0) BS03 RTO N/A GO:0005216 ... Q9WUD2 39972168
    940575 9b3z:B (3.0) BS01 FZ4 N/A GO:0005216 ... Q9WUD2 39972168
    940576 9b3z:B (3.0) BS02 RTO N/A GO:0005216 ... Q9WUD2 39972168
    940577 9b3z:B (3.0) BS03 RTO N/A GO:0005216 ... Q9WUD2 39972168
    940578 9b3z:C (3.0) BS01 FZ4 N/A GO:0005216 ... Q9WUD2 39972168
    940579 9b3z:C (3.0) BS02 RTO N/A GO:0005216 ... Q9WUD2 39972168
    940580 9b3z:C (3.0) BS03 RTO N/A GO:0005216 ... Q9WUD2 39972168
    940581 9b3z:D (3.0) BS01 RTO N/A GO:0005216 ... Q9WUD2 39972168
    940582 9b3z:D (3.0) BS02 FZ4 N/A GO:0005216 ... Q9WUD2 39972168
    940583 9b3z:D (3.0) BS03 RTO N/A GO:0005216 ... Q9WUD2 39972168
    940584 9b45:d (3.3) BS01 peptide N/A N/A A0A5P1KVA7 39370451
    940585 9b45:e (3.3) BS01 peptide N/A N/A A0A5P1KVA7 39370451
    940586 9b45:f (3.3) BS01 peptide N/A N/A A0A5P1KVA7 39370451
    940587 9b45:g (3.3) BS01 peptide N/A N/A A0A5Q5ANV0 39370451
    940588 9b45:g (3.3) BS02 peptide N/A N/A A0A5Q5ANV0 39370451
    940589 9b45:g (3.3) BS03 peptide N/A N/A A0A5Q5ANV0 39370451
    940590 9b45:h (3.3) BS01 peptide N/A N/A A0A5Q5ANV0 39370451
    940591 9b45:h (3.3) BS02 peptide N/A N/A A0A5Q5ANV0 39370451
    940592 9b45:h (3.3) BS03 peptide N/A N/A A0A5Q5ANV0 39370451
    940593 9b45:i (3.3) BS01 peptide N/A N/A A0A5Q5ANV0 39370451
    940594 9b45:i (3.3) BS02 peptide N/A N/A A0A5Q5ANV0 39370451
    940595 9b47:A (3.7) BS01 PO4 N/A GO:0005315 ... G4TS85 N/A
    940596 9b49:A (3.1) BS01 PO4 N/A GO:0005315 ... G4TS85 N/A
    940597 9b49:B (3.1) BS01 PO4 N/A GO:0005315 ... G4TS85 N/A
    940598 9b4e:A (2.7) BS01 P5S N/A GO:0006659 ... P48651 39208797
    940599 9b4e:A (2.7) BS02 P5S N/A GO:0006659 ... P48651 39208797
    940600 9b4e:A (2.7) BS03 LBN N/A GO:0006659 ... P48651 39208797

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).