SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    940801 9b50:AN (2.7) BS01 rna N/A GO:0000028 ... P0AG59 40866347
    940802 9b50:AO (2.7) BS01 rna N/A GO:0000028 ... P0ADZ4 40866347
    940803 9b50:AO (2.7) BS02 rna N/A GO:0000028 ... P0ADZ4 40866347
    940804 9b50:AP (2.7) BS01 rna N/A GO:0000028 ... P0A7T3 40866347
    940805 9b50:AQ (2.7) BS01 rna N/A GO:0000028 ... P0AG63 40866347
    940806 9b50:AR (2.7) BS01 rna N/A GO:0002181 ... P0A7T7 40866347
    940807 9b50:AS (2.7) BS01 rna N/A GO:0002181 ... P0A7U3 40866347
    940808 9b50:AT (2.7) BS01 rna N/A GO:0000028 ... P0A7U7 40866347
    940809 9b50:AU (2.7) BS01 rna N/A GO:0000028 ... P68679 40866347
    940810 9b50:B0 (2.7) BS01 rna N/A GO:0000027 ... P0A7N4 40866347
    940811 9b50:B1 (2.7) BS01 rna N/A GO:0000027 ... P0A7N9 40866347
    940812 9b50:B2 (2.7) BS01 rna N/A GO:0002181 ... P0A7P5 40866347
    940813 9b50:B3 (2.7) BS01 rna N/A GO:0002181 ... P0A7Q1 40866347
    940814 9b50:B4 (2.7) BS01 rna N/A GO:0002181 ... P0A7Q6 40866347
    940815 9b50:B4 (2.7) BS02 ZN N/A GO:0002181 ... P0A7Q6 40866347
    940816 9b50:B5 (2.7) BS01 rna N/A GO:0002181 ... P0A7M9 40866347
    940817 9b50:B5 (2.7) BS02 rna N/A GO:0002181 ... P0A7M9 40866347
    940818 9b50:B5 (2.7) BS03 ZN N/A GO:0002181 ... P0A7M9 40866347
    940819 9b50:BC (2.7) BS01 rna N/A GO:0000027 ... P60422 40866347
    940820 9b50:BD (2.7) BS01 rna N/A GO:0000027 ... P60438 40866347
    940821 9b50:BE (2.7) BS01 rna N/A GO:0001070 ... P60723 40866347
    940822 9b50:BF (2.7) BS01 rna N/A GO:0000027 ... P62399 40866347
    940823 9b50:BF (2.7) BS02 rna N/A GO:0000027 ... P62399 40866347
    940824 9b50:BG (2.7) BS01 rna N/A GO:0000027 ... P0AG55 40866347
    940825 9b50:BH (2.7) BS01 rna N/A GO:0002181 ... P0A7R1 40866347
    940826 9b50:BJ (2.7) BS01 rna N/A GO:0002181 ... P0AA10 40866347
    940827 9b50:BK (2.7) BS01 rna N/A GO:0002181 ... P0ADY3 40866347
    940828 9b50:BK (2.7) BS02 rna N/A GO:0002181 ... P0ADY3 40866347
    940829 9b50:BL (2.7) BS01 rna N/A GO:0002181 ... P02413 40866347
    940830 9b50:BM (2.7) BS01 rna N/A GO:0000027 ... P0ADY7 40866347
    940831 9b50:BM (2.7) BS02 rna N/A GO:0000027 ... P0ADY7 40866347
    940832 9b50:BN (2.7) BS01 rna N/A GO:0000027 ... P0AG44 40866347
    940833 9b50:BO (2.7) BS01 rna N/A GO:0002181 ... P0C018 40866347
    940834 9b50:BO (2.7) BS02 rna N/A GO:0002181 ... P0C018 40866347
    940835 9b50:BP (2.7) BS01 rna N/A GO:0000027 ... P0A7K6 40866347
    940836 9b50:BP (2.7) BS02 rna N/A GO:0000027 ... P0A7K6 40866347
    940837 9b50:BQ (2.7) BS01 rna N/A GO:0000027 ... P0A7L3 40866347
    940838 9b50:BR (2.7) BS01 rna N/A GO:0002181 ... P0AG48 40866347
    940839 9b50:BS (2.7) BS01 rna N/A GO:0002181 ... P61175 40866347
    940840 9b50:BT (2.7) BS01 rna N/A GO:0000027 ... P0ADZ0 40866347
    940841 9b50:BU (2.7) BS01 rna N/A GO:0000027 ... P60624 40866347
    940842 9b50:BV (2.7) BS01 rna N/A GO:0000027 ... P68919 40866347
    940843 9b50:BW (2.7) BS01 rna N/A GO:0000027 ... P0A7L8 40866347
    940844 9b50:BW (2.7) BS02 rna N/A GO:0000027 ... P0A7L8 40866347
    940845 9b50:BX (2.7) BS01 rna N/A GO:0000027 ... P0A7M2 40866347
    940846 9b50:BY (2.7) BS01 rna N/A GO:0000027 ... P0A7M6 40866347
    940847 9b50:BZ (2.7) BS01 rna N/A GO:0000027 ... P0AG51 40866347
    940848 9b51:AB (2.4) BS01 rna N/A GO:0000028 ... P0A7V0 40866347
    940849 9b51:AC (2.4) BS01 rna N/A GO:0000028 ... P0A7V3 40866347
    940850 9b51:AD (2.4) BS01 rna N/A GO:0000028 ... P0A7V8 40866347
    940851 9b51:AE (2.4) BS01 rna N/A GO:0000028 ... P0A7W1 40866347
    940852 9b51:AF (2.4) BS01 rna N/A GO:0002181 ... P02358 40866347
    940853 9b51:AG (2.4) BS01 rna N/A GO:0000028 ... P02359 40866347
    940854 9b51:AG (2.4) BS02 rna N/A GO:0000028 ... P02359 40866347
    940855 9b51:AH (2.4) BS01 rna N/A GO:0000028 ... P0A7W7 40866347
    940856 9b51:AI (2.4) BS01 rna N/A GO:0002181 ... P0A7X3 40866347
    940857 9b51:AI (2.4) BS02 rna N/A GO:0002181 ... P0A7X3 40866347
    940858 9b51:AJ (2.4) BS01 rna N/A GO:0000049 ... P0A7R5 40866347
    940859 9b51:AK (2.4) BS01 rna N/A GO:0002181 ... P0A7R9 40866347
    940860 9b51:AL (2.4) BS01 rna N/A GO:0000049 ... P0A7S3 40866347
    940861 9b51:AM (2.4) BS01 rna N/A GO:0000049 ... P0A7S9 40866347
    940862 9b51:AN (2.4) BS01 rna N/A GO:0000028 ... P0AG59 40866347
    940863 9b51:AO (2.4) BS01 rna N/A GO:0000028 ... P0ADZ4 40866347
    940864 9b51:AO (2.4) BS02 rna N/A GO:0000028 ... P0ADZ4 40866347
    940865 9b51:AP (2.4) BS01 rna N/A GO:0000028 ... P0A7T3 40866347
    940866 9b51:AQ (2.4) BS01 rna N/A GO:0000028 ... P0AG63 40866347
    940867 9b51:AR (2.4) BS01 rna N/A GO:0002181 ... P0A7T7 40866347
    940868 9b51:AS (2.4) BS01 rna N/A GO:0002181 ... P0A7U3 40866347
    940869 9b51:AT (2.4) BS01 rna N/A GO:0000028 ... P0A7U7 40866347
    940870 9b51:AU (2.4) BS01 rna N/A GO:0000028 ... P68679 40866347
    940871 9b51:B0 (2.4) BS01 rna N/A GO:0000027 ... P0A7N4 40866347
    940872 9b51:B1 (2.4) BS01 rna N/A GO:0000027 ... P0A7N9 40866347
    940873 9b51:B2 (2.4) BS01 rna N/A GO:0002181 ... P0A7P5 40866347
    940874 9b51:B3 (2.4) BS01 rna N/A GO:0002181 ... P0A7Q1 40866347
    940875 9b51:B4 (2.4) BS01 rna N/A GO:0002181 ... P0A7Q6 40866347
    940876 9b51:B4 (2.4) BS02 ZN N/A GO:0002181 ... P0A7Q6 40866347
    940877 9b51:B5 (2.4) BS01 rna N/A GO:0002181 ... P0A7M9 40866347
    940878 9b51:B5 (2.4) BS02 ZN N/A GO:0002181 ... P0A7M9 40866347
    940879 9b51:BC (2.4) BS01 rna N/A GO:0000027 ... P60422 40866347
    940880 9b51:BD (2.4) BS01 rna N/A GO:0000027 ... P60438 40866347
    940881 9b51:BE (2.4) BS01 rna N/A GO:0001070 ... P60723 40866347
    940882 9b51:BF (2.4) BS01 rna N/A GO:0000027 ... P62399 40866347
    940883 9b51:BF (2.4) BS02 rna N/A GO:0000027 ... P62399 40866347
    940884 9b51:BF (2.4) BS03 rna N/A GO:0000027 ... P62399 40866347
    940885 9b51:BG (2.4) BS01 rna N/A GO:0000027 ... P0AG55 40866347
    940886 9b51:BH (2.4) BS01 rna N/A GO:0002181 ... P0A7R1 40866347
    940887 9b51:BJ (2.4) BS01 rna N/A GO:0002181 ... P0AA10 40866347
    940888 9b51:BK (2.4) BS01 rna N/A GO:0002181 ... P0ADY3 40866347
    940889 9b51:BK (2.4) BS02 rna N/A GO:0002181 ... P0ADY3 40866347
    940890 9b51:BL (2.4) BS01 rna N/A GO:0002181 ... P02413 40866347
    940891 9b51:BM (2.4) BS01 rna N/A GO:0000027 ... P0ADY7 40866347
    940892 9b51:BM (2.4) BS02 rna N/A GO:0000027 ... P0ADY7 40866347
    940893 9b51:BM (2.4) BS03 rna N/A GO:0000027 ... P0ADY7 40866347
    940894 9b51:BN (2.4) BS01 rna N/A GO:0000027 ... P0AG44 40866347
    940895 9b51:BO (2.4) BS01 rna N/A GO:0002181 ... P0C018 40866347
    940896 9b51:BO (2.4) BS02 rna N/A GO:0002181 ... P0C018 40866347
    940897 9b51:BP (2.4) BS01 rna N/A GO:0000027 ... P0A7K6 40866347
    940898 9b51:BP (2.4) BS02 rna N/A GO:0000027 ... P0A7K6 40866347
    940899 9b51:BQ (2.4) BS01 rna N/A GO:0000027 ... P0A7L3 40866347
    940900 9b51:BR (2.4) BS01 rna N/A GO:0002181 ... P0AG48 40866347
    940901 9b51:BS (2.4) BS01 rna N/A GO:0002181 ... P61175 40866347
    940902 9b51:BT (2.4) BS01 rna N/A GO:0000027 ... P0ADZ0 40866347
    940903 9b51:BU (2.4) BS01 rna N/A GO:0000027 ... P60624 40866347
    940904 9b51:BV (2.4) BS01 rna N/A GO:0000027 ... P68919 40866347
    940905 9b51:BW (2.4) BS01 rna N/A GO:0000027 ... P0A7L8 40866347
    940906 9b51:BW (2.4) BS02 rna N/A GO:0000027 ... P0A7L8 40866347
    940907 9b51:BX (2.4) BS01 rna N/A GO:0000027 ... P0A7M2 40866347
    940908 9b51:BY (2.4) BS01 rna N/A GO:0000027 ... P0A7M6 40866347
    940909 9b51:BZ (2.4) BS01 rna N/A GO:0000027 ... P0AG51 40866347
    940910 9b54:R (2.86) BS01 A1AIW N/A GO:0004930 ... P21554 40044849
    940911 9b55:B (3.23) BS01 A1AIV ? N/A P0CH07 39143218
    940912 9b56:A (3.35) BS01 A1AIV 2.3.2.23 GO:0000209 ... P46595 39143218
    940913 9b56:B (3.35) BS01 A1AIV ? N/A P0CH07 39143218
    940914 9b57:B (3.37) BS01 A1AIV ? N/A P0CH07 39143218
    940915 9b58:A (3.39) BS01 A1AIV 2.3.2.23 GO:0000209 ... P46595 39143218
    940916 9b59:C (3.49) BS01 A1AIV 2.3.2.26 GO:0004842 ... Q9UTG2 39143218
    940917 9b5a:C (3.65) BS01 A1AIV 2.3.2.26 GO:0004842 ... Q9UTG2 39143218
    940918 9b5b:C (3.31) BS01 A1AIV 2.3.2.26 GO:0004842 ... Q9UTG2 39143218
    940919 9b5c:A (2.5) BS01 ATP 6.2.1.45 GO:0000287 ... O94609 39143218
    940920 9b5c:A (2.5) BS02 A1AIV 6.2.1.45 GO:0000287 ... O94609 39143218
    940921 9b5c:C (2.5) BS01 A1AIV 2.3.2.23 GO:0000209 ... P46595 39143218
    940922 9b5d:A (2.8) BS01 ATP 6.2.1.45 GO:0000287 ... O94609 39143218
    940923 9b5d:A (2.8) BS02 A1AIV 6.2.1.45 GO:0000287 ... O94609 39143218
    940924 9b5d:C (2.8) BS01 A1AIV 2.3.2.23 GO:0000209 ... P46595 39143218
    940925 9b5e:A (2.81) BS01 ATP 6.2.1.45 GO:0000287 ... O94609 39143218
    940926 9b5e:A (2.81) BS02 A1AIV 6.2.1.45 GO:0000287 ... O94609 39143218
    940927 9b5e:C (2.81) BS01 A1AIV 2.3.2.23 GO:0000209 ... P46595 39143218
    940928 9b5f:A (2.78) BS01 ATP 6.2.1.45 GO:0000287 ... O94609 39143218
    940929 9b5f:A (2.78) BS02 A1AIV 6.2.1.45 GO:0000287 ... O94609 39143218
    940930 9b5f:C (2.78) BS01 A1AIV 2.3.2.23 GO:0000209 ... P46595 39143218
    940931 9b5g:A (2.67) BS01 ATP 6.2.1.45 GO:0000287 ... O94609 39143218
    940932 9b5g:A (2.67) BS02 A1AIV 6.2.1.45 GO:0000287 ... O94609 39143218
    940933 9b5g:C (2.67) BS01 A1AIV 2.3.2.23 GO:0000209 ... P46595 39143218
    940934 9b5h:A (2.69) BS01 POP 6.2.1.45 GO:0000287 ... O94609 39143218
    940935 9b5h:A (2.69) BS02 AMP 6.2.1.45 GO:0000287 ... O94609 39143218
    940936 9b5h:A (2.69) BS03 A1AIV 6.2.1.45 GO:0000287 ... O94609 39143218
    940937 9b5h:C (2.69) BS01 A1AIV 2.3.2.23 GO:0000209 ... P46595 39143218
    940938 9b5i:A (2.7) BS01 POP 6.2.1.45 GO:0000287 ... O94609 39143218
    940939 9b5i:A (2.7) BS02 AMP 6.2.1.45 GO:0000287 ... O94609 39143218
    940940 9b5i:A (2.7) BS03 A1AIV 6.2.1.45 GO:0000287 ... O94609 39143218
    940941 9b5j:A (2.86) BS01 AMP 6.2.1.45 GO:0000287 ... O94609 39143218
    940942 9b5j:A (2.86) BS02 A1AIV 6.2.1.45 GO:0000287 ... O94609 39143218
    940943 9b5k:A (3.16) BS01 ATP 6.2.1.45 GO:0000287 ... O94609 39143218
    940944 9b5k:C (3.16) BS01 A1AIV 2.3.2.23 GO:0000209 ... P46595 39143218
    940945 9b5l:A (3.3) BS01 AMP 6.2.1.45 GO:0000287 ... O94609 39143218
    940946 9b5l:A (3.3) BS02 A1AIV 6.2.1.45 GO:0000287 ... O94609 39143218
    940947 9b5l:C (3.3) BS01 A1AIV 2.3.2.23 GO:0000209 ... P46595 39143218
    940948 9b5m:A (2.79) BS01 ATP 6.2.1.45 GO:0000287 ... O94609 39143218
    940949 9b5m:A (2.79) BS02 A1AIV 6.2.1.45 GO:0000287 ... O94609 39143218
    940950 9b5m:C (2.79) BS01 A1AIV 2.3.2.23 GO:0000209 ... P46595 39143218
    940951 9b5n:A (3.12) BS01 ATP 6.2.1.45 GO:0000287 ... O94609 39143218
    940952 9b5n:A (3.12) BS02 A1AIV 6.2.1.45 GO:0000287 ... O94609 39143218
    940953 9b5n:C (3.12) BS01 A1AIV 2.3.2.23 GO:0000209 ... P46595 39143218
    940954 9b5o:A (3.19) BS01 ATP 6.2.1.45 GO:0000287 ... O94609 39143218
    940955 9b5o:A (3.19) BS02 A1AIV 6.2.1.45 GO:0000287 ... O94609 39143218
    940956 9b5o:C (3.19) BS01 A1AIV 2.3.2.23 GO:0000209 ... P46595 39143218
    940957 9b5p:A (3.08) BS01 ATP 6.2.1.45 GO:0000287 ... O94609 39143218
    940958 9b5p:A (3.08) BS02 A1AIV 6.2.1.45 GO:0000287 ... O94609 39143218
    940959 9b5p:C (3.08) BS01 peptide 2.3.2.23 GO:0000209 ... P46595 39143218
    940960 9b5p:C (3.08) BS02 A1AIV 2.3.2.23 GO:0000209 ... P46595 39143218
    940961 9b5q:A (2.95) BS01 ATP 6.2.1.45 GO:0000287 ... O94609 39143218
    940962 9b5q:A (2.95) BS02 A1AIV 6.2.1.45 GO:0000287 ... O94609 39143218
    940963 9b5q:C (2.95) BS01 A1AIV 2.3.2.23 GO:0000209 ... P46595 39143218
    940964 9b5r:A (2.95) BS01 ATP 6.2.1.45 GO:0000287 ... O94609 39143218
    940965 9b5r:A (2.95) BS02 A1AIV 6.2.1.45 GO:0000287 ... O94609 39143218
    940966 9b5r:C (2.95) BS01 A1AIV 2.3.2.23 GO:0000209 ... P46595 39143218
    940967 9b5s:A (2.96) BS01 ATP 6.2.1.45 GO:0000287 ... O94609 39143218
    940968 9b5s:A (2.96) BS02 A1AIV 6.2.1.45 GO:0000287 ... O94609 39143218
    940969 9b5t:A (3.16) BS01 ATP 6.2.1.45 GO:0000287 ... O94609 39143218
    940970 9b5t:A (3.16) BS02 A1AIV 6.2.1.45 GO:0000287 ... O94609 39143218
    940971 9b5u:A (3.67) BS01 ATP 6.2.1.45 GO:0000287 ... O94609 39143218
    940972 9b5v:A (3.94) BS01 MG 6.2.1.45 GO:0000287 ... O94609 39143218
    940973 9b5v:A (3.94) BS02 ATP 6.2.1.45 GO:0000287 ... O94609 39143218
    940974 9b5v:C (3.94) BS01 A1AIV 2.3.2.23 GO:0000209 ... P46595 39143218
    940975 9b5w:A (3.96) BS01 ATP 6.2.1.45 GO:0000287 ... O94609 39143218
    940976 9b5w:A (3.96) BS02 A1AIV 6.2.1.45 GO:0000287 ... O94609 39143218
    940977 9b5w:C (3.96) BS01 A1AIV 2.3.2.23 GO:0000209 ... P46595 39143218
    940978 9b5x:A (4.16) BS01 MG 6.2.1.45 GO:0000287 ... O94609 39143218
    940979 9b5x:A (4.16) BS02 ATP 6.2.1.45 GO:0000287 ... O94609 39143218
    940980 9b5x:A (4.16) BS03 A1AIV 6.2.1.45 GO:0000287 ... O94609 39143218
    940981 9b5x:C (4.16) BS01 A1AIV 2.3.2.23 GO:0000209 ... P46595 39143218
    940982 9b5y:R (3.49) BS01 peptide N/A GO:0004888 ... Q03431 40138341
    940983 9b62:B (2.9) BS01 GTP N/A GO:0000054 ... P62826 40640138
    940984 9b62:B (2.9) BS02 MG N/A GO:0000054 ... P62826 40640138
    940985 9b62:F (2.9) BS01 GTP N/A GO:0000054 ... P62826 40640138
    940986 9b62:F (2.9) BS02 MG N/A GO:0000054 ... P62826 40640138
    940987 9b65:R (3.03) BS01 KCA N/A GO:0004930 ... P21554 40044849
    940988 9b6d:A (3.3) BS01 Y01 N/A GO:0005216 ... Q8R4D5 39093967
    940989 9b6d:A (3.3) BS02 Y01 N/A GO:0005216 ... Q8R4D5 39093967
    940990 9b6d:A (3.3) BS03 Y01 N/A GO:0005216 ... Q8R4D5 39093967
    940991 9b6d:B (3.3) BS01 Y01 N/A GO:0005216 ... Q8R4D5 39093967
    940992 9b6d:B (3.3) BS02 Y01 N/A GO:0005216 ... Q8R4D5 39093967
    940993 9b6d:C (3.3) BS01 Y01 N/A GO:0005216 ... Q8R4D5 39093967
    940994 9b6d:C (3.3) BS02 Y01 N/A GO:0005216 ... Q8R4D5 39093967
    940995 9b6d:D (3.3) BS01 Y01 N/A GO:0005216 ... Q8R4D5 39093967
    940996 9b6d:D (3.3) BS02 Y01 N/A GO:0005216 ... Q8R4D5 39093967
    940997 9b6d:D (3.3) BS03 Y01 N/A GO:0005216 ... Q8R4D5 39093967
    940998 9b6e:A (2.91) BS01 Y01 N/A GO:0005216 ... Q8R4D5 39093967
    940999 9b6e:A (2.91) BS02 T14 N/A GO:0005216 ... Q8R4D5 39093967
    941000 9b6e:B (2.91) BS01 T14 N/A GO:0005216 ... Q8R4D5 39093967

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).