SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    941001 9j0o:e (3.3) BS02 dna N/A N/A P84243 N/A
    941002 9j0o:f (3.3) BS01 dna N/A N/A P62805 N/A
    941003 9j0o:f (3.3) BS02 dna N/A N/A P62805 N/A
    941004 9j0o:g (3.3) BS01 dna N/A N/A P04908 N/A
    941005 9j0o:g (3.3) BS02 dna N/A N/A P04908 N/A
    941006 9j0o:h (3.3) BS01 dna N/A N/A P06899 N/A
    941007 9j0o:h (3.3) BS02 dna N/A N/A P06899 N/A
    941008 9j0p:A (3.3) BS01 dna N/A N/A A0A8D1DPV6 N/A
    941009 9j0p:A (3.3) BS02 rna N/A N/A A0A8D1DPV6 N/A
    941010 9j0p:A (3.3) BS03 ZN N/A N/A A0A8D1DPV6 N/A
    941011 9j0p:A (3.3) BS04 MG N/A N/A A0A8D1DPV6 N/A
    941012 9j0p:B (3.3) BS01 dna N/A N/A A0A4X1TVZ5 N/A
    941013 9j0p:B (3.3) BS02 rna N/A N/A A0A4X1TVZ5 N/A
    941014 9j0p:B (3.3) BS03 ZN N/A N/A A0A4X1TVZ5 N/A
    941015 9j0p:C (3.3) BS01 ZN N/A N/A A0A481DF93 N/A
    941016 9j0p:E (3.3) BS01 dna N/A N/A A0A4X1VTX4 N/A
    941017 9j0p:I (3.3) BS01 ZN N/A N/A P60899 N/A
    941018 9j0p:I (3.3) BS02 ZN N/A N/A P60899 N/A
    941019 9j0p:J (3.3) BS01 ZN N/A N/A A0A493TD97 N/A
    941020 9j0p:L (3.3) BS01 ZN N/A N/A A0A4X1TRS6 N/A
    941021 9j0p:Y (3.3) BS01 ZN N/A N/A P63272 N/A
    941022 9j0p:a (3.3) BS01 dna N/A N/A P84243 N/A
    941023 9j0p:a (3.3) BS02 dna N/A N/A P84243 N/A
    941024 9j0p:b (3.3) BS01 dna N/A N/A P62805 N/A
    941025 9j0p:b (3.3) BS02 dna N/A N/A P62805 N/A
    941026 9j0p:c (3.3) BS01 dna N/A N/A P04908 N/A
    941027 9j0p:c (3.3) BS02 dna N/A N/A P04908 N/A
    941028 9j0p:d (3.3) BS01 dna N/A N/A P06899 N/A
    941029 9j0p:d (3.3) BS02 dna N/A N/A P06899 N/A
    941030 9j0p:e (3.3) BS01 dna N/A N/A P84243 N/A
    941031 9j0p:e (3.3) BS02 dna N/A N/A P84243 N/A
    941032 9j0p:f (3.3) BS01 dna N/A N/A P62805 N/A
    941033 9j0p:f (3.3) BS02 dna N/A N/A P62805 N/A
    941034 9j0p:g (3.3) BS01 dna N/A N/A P04908 N/A
    941035 9j0p:g (3.3) BS02 dna N/A N/A P04908 N/A
    941036 9j0p:h (3.3) BS01 dna N/A N/A P06899 N/A
    941037 9j0p:h (3.3) BS02 dna N/A N/A P06899 N/A
    941038 9j0u:A (2.58) BS01 PLP N/A GO:0003824 ... K0NPP0 39766298
    941039 9j0v:A (1.79) BS01 PLP N/A GO:0003824 ... K0NPP0 39766298
    941040 9j19:A (2.7) BS01 MIY N/A N/A P0DTD1 39882595
    941041 9j1a:A (1.48) BS01 MN N/A GO:0005537 ... P02866 N/A
    941042 9j1a:A (1.48) BS02 CA N/A GO:0005537 ... P02866 N/A
    941043 9j1b:A (2.48) BS01 MN N/A GO:0005537 ... P02866 N/A
    941044 9j1b:A (2.48) BS02 CA N/A GO:0005537 ... P02866 N/A
    941045 9j1b:B (2.48) BS01 A1EAT N/A GO:0005537 ... P02866 N/A
    941046 9j1b:B (2.48) BS02 MN N/A GO:0005537 ... P02866 N/A
    941047 9j1b:B (2.48) BS03 CA N/A GO:0005537 ... P02866 N/A
    941048 9j1c:A (2.43) BS01 MN N/A GO:0005537 ... P02866 N/A
    941049 9j1c:A (2.43) BS02 CA N/A GO:0005537 ... P02866 N/A
    941050 9j1c:B (2.43) BS01 A1EAU N/A GO:0005537 ... P02866 N/A
    941051 9j1c:B (2.43) BS02 MN N/A GO:0005537 ... P02866 N/A
    941052 9j1c:B (2.43) BS03 CA N/A GO:0005537 ... P02866 N/A
    941053 9j1c:C (2.43) BS01 A1EAU N/A GO:0005537 ... P02866 N/A
    941054 9j1c:C (2.43) BS02 MN N/A GO:0005537 ... P02866 N/A
    941055 9j1c:C (2.43) BS03 CA N/A GO:0005537 ... P02866 N/A
    941056 9j1c:D (2.43) BS01 MN N/A GO:0005537 ... P02866 N/A
    941057 9j1c:D (2.43) BS02 CA N/A GO:0005537 ... P02866 N/A
    941058 9j1d:A (3.49) BS01 A1EAW N/A GO:0005537 ... P02866 N/A
    941059 9j1d:A (3.49) BS02 CA N/A GO:0005537 ... P02866 N/A
    941060 9j1d:A (3.49) BS03 MN N/A GO:0005537 ... P02866 N/A
    941061 9j1d:B (3.49) BS01 CA N/A GO:0005537 ... P02866 N/A
    941062 9j1d:B (3.49) BS02 MN N/A GO:0005537 ... P02866 N/A
    941063 9j1f:A (2.17) BS01 MN N/A GO:0005537 ... P02866 N/A
    941064 9j1f:A (2.17) BS02 CA N/A GO:0005537 ... P02866 N/A
    941065 9j1f:B (2.17) BS01 A1EAW N/A GO:0005537 ... P02866 N/A
    941066 9j1f:B (2.17) BS02 MN N/A GO:0005537 ... P02866 N/A
    941067 9j1f:B (2.17) BS03 CA N/A GO:0005537 ... P02866 N/A
    941068 9j1f:C (2.17) BS01 A1EAW N/A GO:0005537 ... P02866 N/A
    941069 9j1f:C (2.17) BS02 MN N/A GO:0005537 ... P02866 N/A
    941070 9j1f:C (2.17) BS03 CA N/A GO:0005537 ... P02866 N/A
    941071 9j1f:D (2.17) BS01 MN N/A GO:0005537 ... P02866 N/A
    941072 9j1f:D (2.17) BS02 CA N/A GO:0005537 ... P02866 N/A
    941073 9j1g:A (1.5) BS01 PHT N/A N/A N/A 39642872
    941074 9j1g:A (1.5) BS02 PHT N/A N/A N/A 39642872
    941075 9j1k:J (2.88) BS01 peptide N/A N/A A0A239T408 N/A
    941076 9j1k:J (2.88) BS02 peptide N/A N/A A0A239T408 N/A
    941077 9j1k:O (2.88) BS01 peptide N/A N/A A0A239T408 N/A
    941078 9j1k:O (2.88) BS02 peptide N/A N/A A0A239T408 N/A
    941079 9j1k:i (2.88) BS01 peptide N/A N/A A0A239T408 N/A
    941080 9j1k:i (2.88) BS02 peptide N/A N/A A0A239T408 N/A
    941081 9j1l:3 (3.28) BS01 FE N/A N/A A0A3T2E047 N/A
    941082 9j1l:3 (3.28) BS02 FE N/A N/A A0A3T2E047 N/A
    941083 9j1l:O (3.28) BS01 FE N/A N/A A0A3T2E047 N/A
    941084 9j1l:O (3.28) BS02 FE N/A N/A A0A3T2E047 N/A
    941085 9j1l:o (3.28) BS01 FE N/A N/A A0A3T2E047 N/A
    941086 9j1l:o (3.28) BS02 FE N/A N/A A0A3T2E047 N/A
    941087 9j1v:A (2.0) BS01 R3O N/A N/A N/A 39642872
    941088 9j1v:A (2.0) BS02 R3O N/A N/A N/A 39642872
    941089 9j1v:A (2.0) BS03 R3O N/A N/A N/A 39642872
    941090 9j26:A (1.45) BS01 peptide N/A N/A N/A N/A
    941091 9j26:A (1.45) BS02 peptide N/A N/A N/A N/A
    941092 9j26:E (1.45) BS01 peptide N/A N/A N/A N/A
    941093 9j26:F (1.45) BS01 peptide N/A N/A N/A N/A
    941094 9j26:F (1.45) BS02 peptide N/A N/A N/A N/A
    941095 9j26:F (1.45) BS03 peptide N/A N/A N/A N/A
    941096 9j2f:0 (2.2) BS01 BCB N/A N/A A0A348FW70 N/A
    941097 9j2f:0 (2.2) BS02 NS0 N/A N/A A0A348FW70 N/A
    941098 9j2f:0 (2.2) BS03 BCB N/A N/A A0A348FW70 N/A
    941099 9j2f:1 (2.2) BS01 NS0 N/A N/A A0A348FW70 N/A
    941100 9j2f:1 (2.2) BS02 BCB N/A N/A A0A348FW70 N/A
    941101 9j2f:1 (2.2) BS03 BCB N/A N/A A0A348FW70 N/A
    941102 9j2f:2 (2.2) BS01 BCB N/A N/A A0A348G0Y0 N/A
    941103 9j2f:3 (2.2) BS01 NS0 N/A GO:0005886 ... A0A348FW71 N/A
    941104 9j2f:3 (2.2) BS02 NS0 N/A GO:0005886 ... A0A348FW71 N/A
    941105 9j2f:3 (2.2) BS03 BCB N/A GO:0005886 ... A0A348FW71 N/A
    941106 9j2f:3 (2.2) BS04 BCB N/A GO:0005886 ... A0A348FW71 N/A
    941107 9j2f:3 (2.2) BS05 NS0 N/A GO:0005886 ... A0A348FW71 N/A
    941108 9j2f:4 (2.2) BS01 NS0 N/A N/A A0A348FW70 N/A
    941109 9j2f:4 (2.2) BS02 BCB N/A N/A A0A348FW70 N/A
    941110 9j2f:4 (2.2) BS03 BCB N/A N/A A0A348FW70 N/A
    941111 9j2f:5 (2.2) BS01 BCB N/A N/A A0A348G0Y0 N/A
    941112 9j2f:6 (2.2) BS01 NS0 N/A GO:0005886 ... A0A348FW71 N/A
    941113 9j2f:6 (2.2) BS02 BCB N/A GO:0005886 ... A0A348FW71 N/A
    941114 9j2f:6 (2.2) BS03 BCB N/A GO:0005886 ... A0A348FW71 N/A
    941115 9j2f:6 (2.2) BS04 NS0 N/A GO:0005886 ... A0A348FW71 N/A
    941116 9j2f:7 (2.2) BS01 BCB N/A N/A A0A348FW70 N/A
    941117 9j2f:7 (2.2) BS02 NS0 N/A N/A A0A348FW70 N/A
    941118 9j2f:7 (2.2) BS03 BCB N/A N/A A0A348FW70 N/A
    941119 9j2f:8 (2.2) BS01 BCB N/A N/A A0A348G0Y0 N/A
    941120 9j2f:9 (2.2) BS01 BCB N/A GO:0005886 ... A0A348FW71 N/A
    941121 9j2f:9 (2.2) BS02 NS0 N/A GO:0005886 ... A0A348FW71 N/A
    941122 9j2f:9 (2.2) BS03 BCB N/A GO:0005886 ... A0A348FW71 N/A
    941123 9j2f:9 (2.2) BS04 BCB N/A GO:0005886 ... A0A348FW71 N/A
    941124 9j2f:A (2.2) BS01 peptide N/A GO:0005886 ... A0A348FW71 N/A
    941125 9j2f:A (2.2) BS02 UQ8 N/A GO:0005886 ... A0A348FW71 N/A
    941126 9j2f:A (2.2) BS03 BCB N/A GO:0005886 ... A0A348FW71 N/A
    941127 9j2f:A (2.2) BS04 NS0 N/A GO:0005886 ... A0A348FW71 N/A
    941128 9j2f:A (2.2) BS05 BCB N/A GO:0005886 ... A0A348FW71 N/A
    941129 9j2f:B (2.2) BS01 peptide N/A N/A A0A348FW70 N/A
    941130 9j2f:B (2.2) BS02 BCB N/A N/A A0A348FW70 N/A
    941131 9j2f:B (2.2) BS03 BCB N/A N/A A0A348FW70 N/A
    941132 9j2f:C (2.2) BS01 HEC N/A GO:0015979 ... A0A348FW74 N/A
    941133 9j2f:C (2.2) BS02 HEC N/A GO:0015979 ... A0A348FW74 N/A
    941134 9j2f:C (2.2) BS03 HEC N/A GO:0015979 ... A0A348FW74 N/A
    941135 9j2f:C (2.2) BS04 HEC N/A GO:0015979 ... A0A348FW74 N/A
    941136 9j2f:C (2.2) BS05 MG N/A GO:0015979 ... A0A348FW74 N/A
    941137 9j2f:C (2.2) BS06 UQ8 N/A GO:0015979 ... A0A348FW74 N/A
    941138 9j2f:D (2.2) BS01 BCB N/A GO:0005886 ... A0A348FW71 N/A
    941139 9j2f:D (2.2) BS02 NS0 N/A GO:0005886 ... A0A348FW71 N/A
    941140 9j2f:D (2.2) BS03 BCB N/A GO:0005886 ... A0A348FW71 N/A
    941141 9j2f:E (2.2) BS01 peptide N/A N/A A0A348FW70 N/A
    941142 9j2f:E (2.2) BS02 NS0 N/A N/A A0A348FW70 N/A
    941143 9j2f:E (2.2) BS03 BCB N/A N/A A0A348FW70 N/A
    941144 9j2f:E (2.2) BS04 BCB N/A N/A A0A348FW70 N/A
    941145 9j2f:F (2.2) BS01 BCB N/A N/A A0A348G0Y0 N/A
    941146 9j2f:I (2.2) BS01 NS0 N/A GO:0005886 ... A0A348FW71 N/A
    941147 9j2f:I (2.2) BS02 BCB N/A GO:0005886 ... A0A348FW71 N/A
    941148 9j2f:I (2.2) BS03 BCB N/A GO:0005886 ... A0A348FW71 N/A
    941149 9j2f:I (2.2) BS04 NS0 N/A GO:0005886 ... A0A348FW71 N/A
    941150 9j2f:J (2.2) BS01 NS0 N/A N/A A0A348FW70 N/A
    941151 9j2f:J (2.2) BS02 BCB N/A N/A A0A348FW70 N/A
    941152 9j2f:J (2.2) BS03 BCB N/A N/A A0A348FW70 N/A
    941153 9j2f:K (2.2) BS01 BCB N/A N/A A0A348G0Y0 N/A
    941154 9j2f:L (2.2) BS01 UQ8 N/A GO:0012505 ... A0A348FW72 N/A
    941155 9j2f:L (2.2) BS02 BCB N/A GO:0012505 ... A0A348FW72 N/A
    941156 9j2f:L (2.2) BS03 BCB N/A GO:0012505 ... A0A348FW72 N/A
    941157 9j2f:L (2.2) BS04 BPB N/A GO:0012505 ... A0A348FW72 N/A
    941158 9j2f:L (2.2) BS05 UQ8 N/A GO:0012505 ... A0A348FW72 N/A
    941159 9j2f:L (2.2) BS06 FE N/A GO:0012505 ... A0A348FW72 N/A
    941160 9j2f:L (2.2) BS07 BCB N/A GO:0012505 ... A0A348FW72 N/A
    941161 9j2f:L (2.2) BS08 BPB N/A GO:0012505 ... A0A348FW72 N/A
    941162 9j2f:L (2.2) BS09 MQ7 N/A GO:0012505 ... A0A348FW72 N/A
    941163 9j2f:L (2.2) BS10 UQ8 N/A GO:0012505 ... A0A348FW72 N/A
    941164 9j2f:M (2.2) BS01 HEC N/A GO:0015979 ... A0A348FW73 N/A
    941165 9j2f:M (2.2) BS02 BCB N/A GO:0015979 ... A0A348FW73 N/A
    941166 9j2f:M (2.2) BS03 BPB N/A GO:0015979 ... A0A348FW73 N/A
    941167 9j2f:M (2.2) BS04 FE N/A GO:0015979 ... A0A348FW73 N/A
    941168 9j2f:M (2.2) BS05 BCB N/A GO:0015979 ... A0A348FW73 N/A
    941169 9j2f:M (2.2) BS06 BCB N/A GO:0015979 ... A0A348FW73 N/A
    941170 9j2f:M (2.2) BS07 BPB N/A GO:0015979 ... A0A348FW73 N/A
    941171 9j2f:M (2.2) BS08 MQ7 N/A GO:0015979 ... A0A348FW73 N/A
    941172 9j2f:M (2.2) BS09 NS5 N/A GO:0015979 ... A0A348FW73 N/A
    941173 9j2f:M (2.2) BS10 UQ8 N/A GO:0015979 ... A0A348FW73 N/A
    941174 9j2f:M (2.2) BS11 UQ8 N/A GO:0015979 ... A0A348FW73 N/A
    941175 9j2f:N (2.2) BS01 NS0 N/A GO:0005886 ... A0A348FW71 N/A
    941176 9j2f:N (2.2) BS02 BCB N/A GO:0005886 ... A0A348FW71 N/A
    941177 9j2f:N (2.2) BS03 NS0 N/A GO:0005886 ... A0A348FW71 N/A
    941178 9j2f:N (2.2) BS04 BCB N/A GO:0005886 ... A0A348FW71 N/A
    941179 9j2f:N (2.2) BS05 NS0 N/A GO:0005886 ... A0A348FW71 N/A
    941180 9j2f:O (2.2) BS01 BCB N/A N/A A0A348FW70 N/A
    941181 9j2f:O (2.2) BS02 NS0 N/A N/A A0A348FW70 N/A
    941182 9j2f:O (2.2) BS03 BCB N/A N/A A0A348FW70 N/A
    941183 9j2f:P (2.2) BS01 BCB N/A N/A A0A348G0Y0 N/A
    941184 9j2f:Q (2.2) BS01 NS0 N/A GO:0005886 ... A0A348FW71 N/A
    941185 9j2f:Q (2.2) BS02 BCB N/A GO:0005886 ... A0A348FW71 N/A
    941186 9j2f:Q (2.2) BS03 BCB N/A GO:0005886 ... A0A348FW71 N/A
    941187 9j2f:Q (2.2) BS04 NS0 N/A GO:0005886 ... A0A348FW71 N/A
    941188 9j2f:R (2.2) BS01 BCB N/A N/A A0A348FW70 N/A
    941189 9j2f:R (2.2) BS02 NS0 N/A N/A A0A348FW70 N/A
    941190 9j2f:R (2.2) BS03 BCB N/A N/A A0A348FW70 N/A
    941191 9j2f:S (2.2) BS01 BCB N/A N/A A0A348G0Y0 N/A
    941192 9j2f:T (2.2) BS01 BCB N/A GO:0005886 ... A0A348FW71 N/A
    941193 9j2f:T (2.2) BS02 BCB N/A GO:0005886 ... A0A348FW71 N/A
    941194 9j2f:U (2.2) BS01 BCB N/A N/A A0A348FW70 N/A
    941195 9j2f:U (2.2) BS02 NS0 N/A N/A A0A348FW70 N/A
    941196 9j2f:U (2.2) BS03 BCB N/A N/A A0A348FW70 N/A
    941197 9j2f:V (2.2) BS01 BCB N/A N/A A0A348G0Y0 N/A
    941198 9j2f:W (2.2) BS01 NS0 N/A GO:0005886 ... A0A348FW71 N/A
    941199 9j2f:W (2.2) BS02 BCB N/A GO:0005886 ... A0A348FW71 N/A
    941200 9j2f:W (2.2) BS03 NS0 N/A GO:0005886 ... A0A348FW71 N/A
    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).