SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    941401 9bai:A (1.49) BS01 WMU N/A GO:0003924 ... P01116 40099978
    941402 9bai:A (1.49) BS02 GDP N/A GO:0003924 ... P01116 40099978
    941403 9bai:B (1.49) BS01 WMU N/A GO:0003924 ... P01116 40099978
    941404 9bai:B (1.49) BS02 GDP N/A GO:0003924 ... P01116 40099978
    941405 9bai:C (1.49) BS01 WMU N/A GO:0003924 ... P01116 40099978
    941406 9bai:C (1.49) BS02 GDP N/A GO:0003924 ... P01116 40099978
    941407 9bai:D (1.49) BS01 WMU N/A GO:0003924 ... P01116 40099978
    941408 9bai:D (1.49) BS02 GDP N/A GO:0003924 ... P01116 40099978
    941409 9baj:A (1.49) BS01 A1AK8 N/A GO:0003924 ... P01116 40099978
    941410 9baj:A (1.49) BS02 GDP N/A GO:0003924 ... P01116 40099978
    941411 9baj:B (1.49) BS01 A1AK8 N/A GO:0003924 ... P01116 40099978
    941412 9baj:B (1.49) BS02 GDP N/A GO:0003924 ... P01116 40099978
    941413 9baj:C (1.49) BS01 A1AK8 N/A GO:0003924 ... P01116 40099978
    941414 9baj:C (1.49) BS02 GDP N/A GO:0003924 ... P01116 40099978
    941415 9baj:D (1.49) BS01 A1AK8 N/A GO:0003924 ... P01116 40099978
    941416 9baj:D (1.49) BS02 GDP N/A GO:0003924 ... P01116 40099978
    941417 9bak:A (1.67) BS01 GDP N/A GO:0003924 ... P01116 40099978
    941418 9bak:A (1.67) BS02 WN3 N/A GO:0003924 ... P01116 40099978
    941419 9bak:B (1.67) BS01 GDP N/A GO:0003924 ... P01116 40099978
    941420 9bak:B (1.67) BS02 WN3 N/A GO:0003924 ... P01116 40099978
    941421 9bak:C (1.67) BS01 GDP N/A GO:0003924 ... P01116 40099978
    941422 9bak:C (1.67) BS02 WN3 N/A GO:0003924 ... P01116 40099978
    941423 9bak:D (1.67) BS01 GDP N/A GO:0003924 ... P01116 40099978
    941424 9bak:D (1.67) BS02 WN3 N/A GO:0003924 ... P01116 40099978
    941425 9bal:A (1.5) BS01 BGC N/A N/A D1PD12 39122003
    941426 9bal:A (1.5) BS02 BGC N/A N/A D1PD12 39122003
    941427 9bal:A (1.5) BS03 BGC N/A N/A D1PD12 39122003
    941428 9bal:A (1.5) BS04 BGC N/A N/A D1PD12 39122003
    941429 9bal:A (1.5) BS05 MG N/A N/A D1PD12 39122003
    941430 9bam:A (2.05) BS01 MG N/A N/A D1PD12 39122003
    941431 9ban:D (3.39) BS01 peptide N/A GO:0008083 ... P03971 39805014
    941432 9ban:G (3.39) BS01 peptide N/A N/A N/A 39805014
    941433 9bap:A (2.88) BS01 SAH N/A GO:0003677 ... Q96W73 39122718
    941434 9bap:A (2.88) BS02 ZN N/A GO:0003677 ... Q96W73 39122718
    941435 9baq:A (2.79) BS01 peptide N/A GO:0003682 ... Q96W73 39122718
    941436 9baq:A (2.79) BS02 peptide N/A GO:0003682 ... Q96W73 39122718
    941437 9baq:A (2.79) BS03 dna N/A GO:0003682 ... Q96W73 39122718
    941438 9baq:A (2.79) BS04 dna N/A GO:0003682 ... Q96W73 39122718
    941439 9baq:A (2.79) BS05 SAH N/A GO:0003682 ... Q96W73 39122718
    941440 9baq:A (2.79) BS06 ZN N/A GO:0003682 ... Q96W73 39122718
    941441 9bar:A (1.75) BS01 CA N/A GO:0005509 ... P02630 39584689
    941442 9bar:A (1.75) BS02 CA N/A GO:0005509 ... P02630 39584689
    941443 9bas:A (1.791) BS01 CA N/A N/A A0A1I0C1I6 N/A
    941444 9bas:A (1.791) BS02 G6S N/A N/A A0A1I0C1I6 N/A
    941445 9bas:B (1.791) BS01 CA N/A N/A A0A1I0C1I6 N/A
    941446 9bas:B (1.791) BS02 G6S N/A N/A A0A1I0C1I6 N/A
    941447 9bat:A (2.9) BS01 HEM N/A GO:0004497 ... A0AA47NUB9 40565153
    941448 9bat:B (2.9) BS01 HEM N/A GO:0004497 ... A0AA47NUB9 40565153
    941449 9bau:A (2.301) BS01 CA N/A GO:0004098 ... A0A2K4XG55 N/A
    941450 9bau:A (2.301) BS02 G6S N/A GO:0004098 ... A0A2K4XG55 N/A
    941451 9bau:B (2.301) BS01 CA N/A GO:0004098 ... A0A2K4XG55 N/A
    941452 9bau:B (2.301) BS02 G6S N/A GO:0004098 ... A0A2K4XG55 N/A
    941453 9bav:A (2.494) BS01 G6S N/A GO:0004098 ... A0A2K4XG55 N/A
    941454 9bav:A (2.494) BS02 CA N/A GO:0004098 ... A0A2K4XG55 N/A
    941455 9bav:B (2.494) BS01 A1APD N/A GO:0004098 ... A0A2K4XG55 N/A
    941456 9bav:B (2.494) BS02 A1APB N/A GO:0004098 ... A0A2K4XG55 N/A
    941457 9bav:B (2.494) BS03 A1APC N/A GO:0004098 ... A0A2K4XG55 N/A
    941458 9bav:B (2.494) BS04 A1APC N/A GO:0004098 ... A0A2K4XG55 N/A
    941459 9bav:B (2.494) BS05 CA N/A GO:0004098 ... A0A2K4XG55 N/A
    941460 9baw:B (3.3) BS01 GTP N/A GO:0003924 ... P62826 N/A
    941461 9baw:B (3.3) BS02 MG N/A GO:0003924 ... P62826 N/A
    941462 9baz:A (2.76) BS01 SAH N/A GO:0003682 ... Q96W73 39122718
    941463 9baz:A (2.76) BS02 ZN N/A GO:0003682 ... Q96W73 39122718
    941464 9bb0:BBB (0.985) BS01 ENO N/A GO:0004167 ... P30046 N/A
    941465 9bb0:BBB (0.985) BS02 EN1 N/A GO:0004167 ... P30046 N/A
    941466 9bb8:A (2.722) BS01 CA N/A GO:0005509 ... P20472 39584689
    941467 9bb8:A (2.722) BS02 CA N/A GO:0005509 ... P20472 39584689
    941468 9bb9:A (1.839) BS01 CA N/A GO:0004065 ... A0A2K4XG66 N/A
    941469 9bb9:B (1.839) BS01 CA N/A GO:0004065 ... A0A2K4XG66 N/A
    941470 9bba:A (2.201) BS01 CA N/A GO:0004065 ... A0A2K4XG28 N/A
    941471 9bba:B (2.201) BS01 CA N/A GO:0004065 ... A0A2K4XG28 N/A
    941472 9bba:C (2.201) BS01 CA N/A GO:0004065 ... A0A2K4XG28 N/A
    941473 9bba:D (2.201) BS01 CA N/A GO:0004065 ... A0A2K4XG28 N/A
    941474 9bbb:A (2.5) BS01 HEM N/A GO:0002933 ... P08684 38909836
    941475 9bbb:A (2.5) BS02 A1APA N/A GO:0002933 ... P08684 38909836
    941476 9bbc:A (3.3) BS01 CLR N/A GO:0002250 ... P01848 41402338
    941477 9bbc:B (3.3) BS01 peptide N/A GO:0002250 ... P01850 41402338
    941478 9bbc:X (3.3) BS01 peptide N/A GO:0004888 ... P20963 41402338
    941479 9bbd:A (2.3) BS01 CA N/A N/A A0A2K4XG29 N/A
    941480 9bbd:B (2.3) BS01 CA N/A N/A A0A2K4XG29 N/A
    941481 9bbe:A (2.0) BS01 A1AK9 ? GO:0000781 ... Q16531 N/A
    941482 9bbf:A (3.6) BS01 CA N/A GO:0005576 ... A8DS70 N/A
    941483 9bbf:A (3.6) BS02 CA N/A GO:0005576 ... A8DS70 N/A
    941484 9bbf:B (3.6) BS01 CA N/A GO:0005576 ... A8DS70 N/A
    941485 9bbf:B (3.6) BS02 CA N/A GO:0005576 ... A8DS70 N/A
    941486 9bbf:C (3.6) BS01 CA N/A GO:0005576 ... A8DS70 N/A
    941487 9bbf:C (3.6) BS02 CA N/A GO:0005576 ... A8DS70 N/A
    941488 9bbf:D (3.6) BS01 CA N/A GO:0005576 ... A8DS70 N/A
    941489 9bbf:D (3.6) BS02 CA N/A GO:0005576 ... A8DS70 N/A
    941490 9bbf:E (3.6) BS01 CA N/A GO:0005576 ... A8DS70 N/A
    941491 9bbf:E (3.6) BS02 CA N/A GO:0005576 ... A8DS70 N/A
    941492 9bbf:F (3.6) BS01 CA N/A GO:0005576 ... A8DS70 N/A
    941493 9bbf:F (3.6) BS02 CA N/A GO:0005576 ... A8DS70 N/A
    941494 9bbf:G (3.6) BS01 CA N/A GO:0005576 ... A8DS70 N/A
    941495 9bbf:G (3.6) BS02 CA N/A GO:0005576 ... A8DS70 N/A
    941496 9bbg:A (1.7) BS01 A1ALA ? GO:0000781 ... Q16531 N/A
    941497 9bbh:A (2.0) BS01 VVP ? GO:0000781 ... Q16531 N/A
    941498 9bbh:A (2.0) BS02 VVP ? GO:0000781 ... Q16531 N/A
    941499 9bbi:A (1.9) BS01 A1ALB ? GO:0000781 ... Q16531 N/A
    941500 9bbj:A (2.56) BS01 peptide N/A N/A P9WPC9 41384615
    941501 9bbo:A (1.5) BS01 GGL N/A GO:0003700 ... P95629 40738191
    941502 9bbo:A (1.5) BS02 FAD N/A GO:0003700 ... P95629 40738191
    941503 9bbo:B (1.5) BS01 GGL N/A GO:0003700 ... P95629 40738191
    941504 9bbo:B (1.5) BS02 FAD N/A GO:0003700 ... P95629 40738191
    941505 9bbp:A (1.81) BS01 VAL N/A GO:0008233 ... P0DTC1 N/A
    941506 9bbp:A (1.81) BS02 PHE N/A GO:0008233 ... P0DTC1 N/A
    941507 9bbp:A (1.81) BS03 A1ALW N/A GO:0008233 ... P0DTC1 N/A
    941508 9bbq:A (1.78) BS01 A1ALF N/A GO:0008233 ... P0DTD1 N/A
    941509 9bbr:A (2.15) BS01 A1ALL N/A GO:0008233 ... P0DTD1 N/A
    941510 9bbs:A (1.95) BS01 A1ALG N/A GO:0008233 ... P0DTD1 N/A
    941511 9bbt:A (2.57) BS01 A1ALH N/A GO:0008233 ... P0DTD1 N/A
    941512 9bbu:A (2.0) BS01 A1ALK N/A GO:0008233 ... P0DTD1 N/A
    941513 9bbu:B (2.0) BS01 A1ALK N/A GO:0008233 ... P0DTD1 N/A
    941514 9bbv:A (2.46) BS01 A1ALD N/A GO:0008233 ... P0DTD1 N/A
    941515 9bbw:A (2.31) BS01 A1ALM N/A GO:0008233 ... P0DTD1 N/A
    941516 9bbx:A (1.8) BS01 A1ALN N/A GO:0008233 ... P0DTD1 N/A
    941517 9bby:A (2.2) BS01 A1ALU N/A GO:0008233 ... P0DTD1 N/A
    941518 9bbz:B (1.62) BS01 A1ALV N/A GO:0008233 ... P0DTD1 N/A
    941519 9bc0:A (2.08) BS01 A1ALX N/A GO:0008233 ... P0DTD1 N/A
    941520 9bc1:A (1.72) BS01 peptide N/A GO:0008233 ... P0DTD1 N/A
    941521 9bc1:A (1.72) BS02 peptide N/A GO:0008233 ... P0DTD1 N/A
    941522 9bc1:B (1.72) BS01 peptide N/A GO:0008233 ... P0DTD1 N/A
    941523 9bc2:A (2.75) BS01 peptide N/A GO:0000785 ... P21980 38959038
    941524 9bc3:A (2.52) BS01 peptide N/A GO:0000785 ... P21980 38959038
    941525 9bc3:A (2.52) BS02 CA N/A GO:0000785 ... P21980 38959038
    941526 9bc3:A (2.52) BS03 CA N/A GO:0000785 ... P21980 38959038
    941527 9bc3:B (2.52) BS01 peptide N/A GO:0000785 ... P21980 38959038
    941528 9bc3:B (2.52) BS02 CA N/A GO:0000785 ... P21980 38959038
    941529 9bc3:B (2.52) BS03 CA N/A GO:0000785 ... P21980 38959038
    941530 9bc4:A (1.84) BS01 peptide N/A GO:0000785 ... P21980 38959038
    941531 9bc4:A (1.84) BS02 CA N/A GO:0000785 ... P21980 38959038
    941532 9bc4:A (1.84) BS03 CA N/A GO:0000785 ... P21980 38959038
    941533 9bc5:A (5.32) BS01 dna N/A GO:0000166 ... P03132 39883011
    941534 9bc5:A (5.32) BS02 dna N/A GO:0000166 ... P03132 39883011
    941535 9bc5:C (5.32) BS01 dna N/A GO:0000166 ... P03132 39883011
    941536 9bc5:D (5.32) BS01 dna N/A GO:0000166 ... P03132 39883011
    941537 9bc5:D (5.32) BS02 dna N/A GO:0000166 ... P03132 39883011
    941538 9bc5:E (5.32) BS01 dna N/A GO:0000166 ... P03132 39883011
    941539 9bc5:F (5.32) BS01 dna N/A GO:0000166 ... P03132 39883011
    941540 9bc5:F (5.32) BS02 dna N/A GO:0000166 ... P03132 39883011
    941541 9bc5:G (5.32) BS01 dna N/A GO:0000166 ... P03132 39883011
    941542 9bc6:A (2.5) BS01 PFL N/A GO:0005216 ... O60741 39085604
    941543 9bc6:B (2.5) BS01 PFL N/A GO:0005216 ... O60741 39085604
    941544 9bc6:C (2.5) BS01 PFL N/A GO:0005216 ... O60741 39085604
    941545 9bc6:D (2.5) BS01 PFL N/A GO:0005216 ... O60741 39085604
    941546 9bc7:A (3.3) BS01 CMP N/A GO:0005216 ... O60741 39085604
    941547 9bc7:B (3.3) BS01 CMP N/A GO:0005216 ... O60741 39085604
    941548 9bc7:C (3.3) BS01 CMP N/A GO:0005216 ... O60741 39085604
    941549 9bc7:D (3.3) BS01 CMP N/A GO:0005216 ... O60741 39085604
    941550 9bc8:A (3.46) BS01 peptide N/A GO:0140737 ... Q1D6H4 39226211
    941551 9bc8:B (3.46) BS01 peptide N/A GO:0140737 ... Q1D6H4 39226211
    941552 9bc8:C (3.46) BS01 peptide N/A GO:0140737 ... Q1D6H4 39226211
    941553 9bc8:D (3.46) BS01 peptide N/A GO:0140737 ... Q1D6H4 39226211
    941554 9bc9:A (1.91) BS01 A1APK N/A N/A Q9Y2U9 39396041
    941555 9bc9:B (1.91) BS01 A1APK N/A N/A Q9Y2U9 39396041
    941556 9bca:A (1.7) BS01 A1APS N/A N/A Q9Y2U9 39396041
    941557 9bca:B (1.7) BS01 A1APS N/A N/A Q9Y2U9 39396041
    941558 9bcb:A (1.45) BS01 A1ALJ ? GO:0005501 ... P82980 N/A
    941559 9bcc:A (1.7) BS01 A1APT N/A N/A Q9Y2U9 39396041
    941560 9bcc:B (1.7) BS01 A1APT N/A N/A Q9Y2U9 39396041
    941561 9bcf:B (3.2) BS01 CA N/A GO:0005509 ... A0A7M4EAX1
    P42212
    39584689
    941562 9bcf:B (3.2) BS02 CA N/A GO:0005509 ... A0A7M4EAX1
    P42212
    39584689
    941563 9bcg:A (1.898) BS01 GLC N/A GO:0008643 ... P0AEX9
    Q07820
    39102508
    941564 9bcg:A (1.898) BS02 GLC N/A GO:0008643 ... P0AEX9
    Q07820
    39102508
    941565 9bcg:A (1.898) BS03 A1ALT N/A GO:0008643 ... P0AEX9
    Q07820
    39102508
    941566 9bcj:A (1.691) BS01 HEM N/A GO:0004601 ... P69905 39739808
    941567 9bcj:B (1.691) BS01 HEM N/A GO:0004601 ... P68871 39739808
    941568 9bcj:C (1.691) BS01 HEM N/A N/A Q6NEE5 39739808
    941569 9bco:A (4.4) BS01 ATP N/A GO:0004672 ... P16066 39543315
    941570 9bco:B (4.4) BS01 ATP N/A GO:0004672 ... P16066 39543315
    941571 9bcp:A (4.1) BS01 ATP N/A GO:0004672 ... P16066 39543315
    941572 9bcp:B (4.1) BS01 ATP N/A GO:0004672 ... P16066 39543315
    941573 9bcq:A (3.1) BS01 peptide N/A GO:0004672 ... P16066 39543315
    941574 9bcq:B (3.1) BS01 peptide N/A GO:0004672 ... P16066 39543315
    941575 9bcs:A (4.4) BS01 ATP N/A GO:0004672 ... P16066 39543315
    941576 9bcs:B (4.4) BS01 ATP N/A GO:0004672 ... P16066 39543315
    941577 9bct:A (2.5) BS01 dna N/A GO:0000287 ... Q5JE33 39322680
    941578 9bct:A (2.5) BS02 dna N/A GO:0000287 ... Q5JE33 39322680
    941579 9bct:A (2.5) BS03 rna N/A GO:0000287 ... Q5JE33 39322680
    941580 9bct:A (2.5) BS04 MG N/A GO:0000287 ... Q5JE33 39322680
    941581 9bct:A (2.5) BS05 ZN N/A GO:0000287 ... Q5JE33 39322680
    941582 9bct:A (2.5) BS06 ZN N/A GO:0000287 ... Q5JE33 39322680
    941583 9bct:B (2.5) BS01 dna N/A GO:0000428 ... Q5JE32 39322680
    941584 9bct:B (2.5) BS02 dna N/A GO:0000428 ... Q5JE32 39322680
    941585 9bct:B (2.5) BS03 rna N/A GO:0000428 ... Q5JE32 39322680
    941586 9bct:B (2.5) BS04 ZN N/A GO:0000428 ... Q5JE32 39322680
    941587 9bct:C (2.5) BS01 dna N/A GO:0000428 ... Q5JE34 39322680
    941588 9bct:C (2.5) BS02 dna N/A GO:0000428 ... Q5JE34 39322680
    941589 9bct:E (2.5) BS01 rna N/A GO:0000428 ... Q5JIY4 39322680
    941590 9bct:I (2.5) BS01 ZN N/A GO:0005694 ... Q5JIY5 39322680
    941591 9bct:J (2.5) BS01 rna N/A GO:0003676 ... Q5JH24 39322680
    941592 9bct:J (2.5) BS02 ZN N/A GO:0003676 ... Q5JH24 39322680
    941593 9bct:M (2.5) BS01 rna N/A GO:0003676 ... Q5JH24 39322680
    941594 9bct:M (2.5) BS02 ZN N/A GO:0003676 ... Q5JH24 39322680
    941595 9bct:N (2.5) BS01 ZN N/A GO:0000428 ... Q5JJC9 39322680
    941596 9bct:P (2.5) BS01 ZN N/A GO:0003677 ... Q5JDM8 39322680
    941597 9bcu:A (2.2) BS01 dna N/A GO:0000287 ... Q5JE33 39322680
    941598 9bcu:A (2.2) BS02 dna N/A GO:0000287 ... Q5JE33 39322680
    941599 9bcu:A (2.2) BS03 rna N/A GO:0000287 ... Q5JE33 39322680
    941600 9bcu:A (2.2) BS04 MG N/A GO:0000287 ... Q5JE33 39322680

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).