SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    941601 9bcu:A (2.2) BS05 ZN N/A GO:0000287 ... Q5JE33 39322680
    941602 9bcu:A (2.2) BS06 ZN N/A GO:0000287 ... Q5JE33 39322680
    941603 9bcu:B (2.2) BS01 dna N/A GO:0000428 ... Q5JE32 39322680
    941604 9bcu:B (2.2) BS02 dna N/A GO:0000428 ... Q5JE32 39322680
    941605 9bcu:B (2.2) BS03 rna N/A GO:0000428 ... Q5JE32 39322680
    941606 9bcu:B (2.2) BS04 ZN N/A GO:0000428 ... Q5JE32 39322680
    941607 9bcu:C (2.2) BS01 dna N/A GO:0000428 ... Q5JE34 39322680
    941608 9bcu:E (2.2) BS01 rna N/A GO:0000428 ... Q5JIY4 39322680
    941609 9bcu:J (2.2) BS01 rna N/A GO:0003676 ... Q5JH24 39322680
    941610 9bcu:J (2.2) BS02 ZN N/A GO:0003676 ... Q5JH24 39322680
    941611 9bcu:M (2.2) BS01 rna N/A GO:0003676 ... Q5JH24 39322680
    941612 9bcu:M (2.2) BS02 ZN N/A GO:0003676 ... Q5JH24 39322680
    941613 9bcu:N (2.2) BS01 ZN N/A GO:0000428 ... Q5JJC9 39322680
    941614 9bcu:P (2.2) BS01 ZN N/A GO:0003677 ... Q5JDM8 39322680
    941615 9bcv:A (3.2) BS01 G2P N/A GO:0001653 ... P16066 39543315
    941616 9bcv:B (3.2) BS01 G2P N/A GO:0001653 ... P16066 39543315
    941617 9bcx:2 (6.1) BS01 dna N/A GO:0000727 ... P29469 39747125
    941618 9bcx:4 (6.1) BS01 dna N/A GO:0000727 ... P30665 39747125
    941619 9bcx:6 (6.1) BS01 dna N/A GO:0000727 ... P53091 39747125
    941620 9bcx:6 (6.1) BS02 dna N/A GO:0000727 ... P53091 39747125
    941621 9bcx:B (6.1) BS01 ATP N/A GO:0003682 ... P54784 39747125
    941622 9bcx:C (6.1) BS01 dna N/A GO:0000781 ... P32833 39747125
    941623 9bcx:E (6.1) BS01 ATP N/A GO:0000808 ... P54791 39747125
    941624 9bcx:F (6.1) BS01 dna N/A GO:0000808 ... P50874 39747125
    941625 9bcx:F (6.1) BS02 ATP N/A GO:0000808 ... P50874 39747125
    941626 9bcx:F (6.1) BS03 ATP N/A GO:0000808 ... P50874 39747125
    941627 9bcx:F (6.1) BS04 MG N/A GO:0000808 ... P50874 39747125
    941628 9bcz:A (1.99) BS01 CA 3.1.4.11 GO:0001669 ... Q2VRL0 N/A
    941629 9bd2:C (2.24) BS01 A1AL3 N/A N/A P43357 39190582
    941630 9bd3:A (2.58) BS01 peptide ? N/A P43358 38907034
    941631 9bd3:C (2.58) BS01 peptide ? N/A P43358 38907034
    941632 9bd5:A (2.7) BS01 CU N/A GO:0005507 ... A0A6N2GR66 39640860
    941633 9bd5:A (2.7) BS02 CU N/A GO:0005507 ... A0A6N2GR66 39640860
    941634 9bd5:A (2.7) BS03 CU N/A GO:0005507 ... A0A6N2GR66 39640860
    941635 9bd5:A (2.7) BS04 CU N/A GO:0005507 ... A0A6N2GR66 39640860
    941636 9bd5:B (2.7) BS01 CU N/A GO:0005507 ... A0A6N2GR66 39640860
    941637 9bd5:B (2.7) BS02 CU N/A GO:0005507 ... A0A6N2GR66 39640860
    941638 9bd5:B (2.7) BS03 CU N/A GO:0005507 ... A0A6N2GR66 39640860
    941639 9bd5:B (2.7) BS04 CU N/A GO:0005507 ... A0A6N2GR66 39640860
    941640 9bd6:A (2.58) BS01 AD9 N/A GO:0005347 ... Q9HUG8 40851428
    941641 9bd6:A (2.58) BS02 ZN N/A GO:0005347 ... Q9HUG8 40851428
    941642 9bd6:A (2.58) BS03 ZN N/A GO:0005347 ... Q9HUG8 40851428
    941643 9bd6:A (2.58) BS04 AD9 N/A GO:0005347 ... Q9HUG8 40851428
    941644 9bd6:B (2.58) BS01 AD9 N/A GO:0005347 ... Q9HUG8 40851428
    941645 9bd6:B (2.58) BS02 AD9 N/A GO:0005347 ... Q9HUG8 40851428
    941646 9bd6:B (2.58) BS03 ZN N/A GO:0005347 ... Q9HUG8 40851428
    941647 9bd6:B (2.58) BS04 ZN N/A GO:0005347 ... Q9HUG8 40851428
    941648 9bd7:A (2.44) BS01 AD9 N/A GO:0005347 ... Q9HUG8 40851428
    941649 9bd7:A (2.44) BS02 AD9 N/A GO:0005347 ... Q9HUG8 40851428
    941650 9bd7:A (2.44) BS03 ZN N/A GO:0005347 ... Q9HUG8 40851428
    941651 9bd7:B (2.44) BS01 AD9 N/A GO:0005347 ... Q9HUG8 40851428
    941652 9bd7:B (2.44) BS02 ZN N/A GO:0005347 ... Q9HUG8 40851428
    941653 9bd7:B (2.44) BS03 AD9 N/A GO:0005347 ... Q9HUG8 40851428
    941654 9bd9:A (2.95) BS01 FUC N/A GO:0005515 ... P0DTC2 N/A
    941655 9bdc:A (2.54) BS01 dna N/A GO:0003676 ... Q96QE5 39164235
    941656 9bdc:B (2.54) BS01 dna N/A GO:0003676 ... Q96QE5 39164235
    941657 9bdc:E (2.54) BS01 dna N/A GO:0000175 ... O00411 39164235
    941658 9bdc:E (2.54) BS02 rna N/A GO:0000175 ... O00411 39164235
    941659 9bdc:E (2.54) BS03 dna N/A GO:0000175 ... O00411 39164235
    941660 9bdd:A (2.86) BS01 dna N/A GO:0003676 ... Q96QE5 39164235
    941661 9bdd:B (2.86) BS01 dna N/A GO:0003676 ... Q96QE5 39164235
    941662 9bdd:E (2.86) BS01 dna N/A GO:0000175 ... O00411 39164235
    941663 9bdd:E (2.86) BS02 rna N/A GO:0000175 ... O00411 39164235
    941664 9bdd:E (2.86) BS03 dna N/A GO:0000175 ... O00411 39164235
    941665 9bdd:E (2.86) BS04 APC N/A GO:0000175 ... O00411 39164235
    941666 9bde:R (4.18) BS01 CA N/A GO:0005509 ... P01130 39663455
    941667 9bde:R (4.18) BS02 CA N/A GO:0005509 ... P01130 39663455
    941668 9bde:R (4.18) BS03 CA N/A GO:0005509 ... P01130 39663455
    941669 9bde:R (4.18) BS04 CA N/A GO:0005509 ... P01130 39663455
    941670 9bde:R (4.18) BS05 CA N/A GO:0005509 ... P01130 39663455
    941671 9bde:R (4.18) BS06 CA N/A GO:0005509 ... P01130 39663455
    941672 9bde:R (4.18) BS07 CA N/A GO:0005509 ... P01130 39663455
    941673 9bdg:F (3.01) BS01 MAN N/A N/A N/A 40267182
    941674 9bdj:A (4.0) BS01 HEM N/A GO:0004096 ... P00432 38962493
    941675 9bdj:A (4.0) BS02 NDP N/A GO:0004096 ... P00432 38962493
    941676 9bdj:B (4.0) BS01 HEM N/A GO:0004096 ... P00432 38962493
    941677 9bdj:B (4.0) BS02 NDP N/A GO:0004096 ... P00432 38962493
    941678 9bdj:C (4.0) BS01 HEM N/A GO:0004096 ... P00432 38962493
    941679 9bdj:C (4.0) BS02 NDP N/A GO:0004096 ... P00432 38962493
    941680 9bdj:D (4.0) BS01 HEM N/A GO:0004096 ... P00432 38962493
    941681 9bdj:D (4.0) BS02 NDP N/A GO:0004096 ... P00432 38962493
    941682 9bdl:AL02 (2.8) BS01 rna N/A GO:0002181 ... G1TT27 38718836
    941683 9bdl:AL02 (2.8) BS02 rna N/A GO:0002181 ... G1TT27 38718836
    941684 9bdl:AL03 (2.8) BS01 rna N/A GO:0003723 ... G1TL06 38718836
    941685 9bdl:AL04 (2.8) BS01 rna N/A GO:0003735 ... A0A5F9DCT1 38718836
    941686 9bdl:AL04 (2.8) BS02 rna N/A GO:0003735 ... A0A5F9DCT1 38718836
    941687 9bdl:AL05 (2.8) BS01 rna N/A GO:0000027 ... P19949 38718836
    941688 9bdl:AL05 (2.8) BS02 rna N/A GO:0000027 ... P19949 38718836
    941689 9bdl:AL06 (2.8) BS01 rna N/A GO:0003735 ... G1SKF7 38718836
    941690 9bdl:AL07 (2.8) BS01 rna N/A GO:0000463 ... G1SV32 38718836
    941691 9bdl:AL07 (2.8) BS02 rna N/A GO:0000463 ... G1SV32 38718836
    941692 9bdl:AL08 (2.8) BS01 rna N/A GO:0003723 ... G1STW0 38718836
    941693 9bdl:AL08 (2.8) BS02 rna N/A GO:0003723 ... G1STW0 38718836
    941694 9bdl:AL09 (2.8) BS01 rna N/A GO:0002181 ... G1SWI6 38718836
    941695 9bdl:AL10 (2.8) BS01 rna N/A GO:0003735 ... B7NZQ2 38718836
    941696 9bdl:AL10 (2.8) BS02 rna N/A GO:0003735 ... B7NZQ2 38718836
    941697 9bdl:AL10 (2.8) BS03 rna N/A GO:0003735 ... B7NZQ2 38718836
    941698 9bdl:AL11 (2.8) BS01 rna N/A GO:0003735 ... G1TUB8 38718836
    941699 9bdl:AL11 (2.8) BS02 rna N/A GO:0003735 ... G1TUB8 38718836
    941700 9bdl:AL11 (2.8) BS03 rna N/A GO:0003735 ... G1TUB8 38718836
    941701 9bdl:AL13 (2.8) BS01 rna N/A GO:0003723 ... G1TKB3 38718836
    941702 9bdl:AL13 (2.8) BS02 rna N/A GO:0003723 ... G1TKB3 38718836
    941703 9bdl:AL14 (2.8) BS01 rna N/A GO:0003723 ... G1SZ12 38718836
    941704 9bdl:AL15 (2.8) BS01 rna N/A GO:0002181 ... G1T0C1 38718836
    941705 9bdl:AL15 (2.8) BS02 rna N/A GO:0002181 ... G1T0C1 38718836
    941706 9bdl:AL16 (2.8) BS01 rna N/A GO:0003729 ... G1TVS8 38718836
    941707 9bdl:AL17 (2.8) BS01 rna N/A GO:0003735 ... G1SCJ6 38718836
    941708 9bdl:AL17 (2.8) BS02 rna N/A GO:0003735 ... G1SCJ6 38718836
    941709 9bdl:AL18 (2.8) BS01 rna N/A GO:0003723 ... G1TFE0 38718836
    941710 9bdl:AL19 (2.8) BS01 rna N/A GO:0003723 ... G1TYL6 38718836
    941711 9bdl:AL19 (2.8) BS02 rna N/A GO:0003723 ... G1TYL6 38718836
    941712 9bdl:AL20 (2.8) BS01 rna N/A GO:0003735 ... G1TTY7 38718836
    941713 9bdl:AL20 (2.8) BS02 rna N/A GO:0003735 ... G1TTY7 38718836
    941714 9bdl:AL21 (2.8) BS01 rna N/A GO:0003735 ... G1SHQ2 38718836
    941715 9bdl:AL21 (2.8) BS02 rna N/A GO:0003735 ... G1SHQ2 38718836
    941716 9bdl:AL22 (2.8) BS01 rna N/A GO:0003735 ... G1TSG1 38718836
    941717 9bdl:AL23 (2.8) BS01 rna N/A GO:0000122 ... G1T6D1 38718836
    941718 9bdl:AL24 (2.8) BS01 rna N/A GO:0003735 ... G1SE28 38718836
    941719 9bdl:AL25 (2.8) BS01 rna N/A GO:0003735 ... G1SE76 38718836
    941720 9bdl:AL25 (2.8) BS02 rna N/A GO:0003735 ... G1SE76 38718836
    941721 9bdl:AL26 (2.8) BS01 rna N/A GO:0003723 ... G1SQH0 38718836
    941722 9bdl:AL26 (2.8) BS02 rna N/A GO:0003723 ... G1SQH0 38718836
    941723 9bdl:AL27 (2.8) BS01 rna N/A GO:0002181 ... G1TXF6 38718836
    941724 9bdl:AL28 (2.8) BS01 rna N/A GO:0003735 ... G1SNY0 38718836
    941725 9bdl:AL29 (2.8) BS01 rna N/A GO:0002181 ... G1SGR6 38718836
    941726 9bdl:AL30 (2.8) BS01 rna N/A GO:0003723 ... G1TDL2 38718836
    941727 9bdl:AL31 (2.8) BS01 rna N/A GO:0003735 ... G1SHG0 38718836
    941728 9bdl:AL32 (2.8) BS01 rna N/A GO:0003735 ... G1TUN8 38718836
    941729 9bdl:AL33 (2.8) BS01 rna N/A GO:0003735 ... G1SF08 38718836
    941730 9bdl:AL34 (2.8) BS01 rna N/A GO:0003735 ... G1TXG5 38718836
    941731 9bdl:AL35 (2.8) BS01 rna N/A GO:0000463 ... G1SIT5 38718836
    941732 9bdl:AL35 (2.8) BS02 rna N/A GO:0000463 ... G1SIT5 38718836
    941733 9bdl:AL36 (2.8) BS01 rna N/A GO:0003735 ... G1TTQ5 38718836
    941734 9bdl:AL37 (2.8) BS01 rna N/A GO:0003735 ... U3KPD5 38718836
    941735 9bdl:AL37 (2.8) BS02 rna N/A GO:0003735 ... U3KPD5 38718836
    941736 9bdl:AL38 (2.8) BS01 rna N/A GO:0003735 ... G1U001 38718836
    941737 9bdl:AL39 (2.8) BS01 rna N/A GO:0003735 ... G1TTN1 38718836
    941738 9bdl:AL39 (2.8) BS02 rna N/A GO:0003735 ... G1TTN1 38718836
    941739 9bdl:AL40 (2.8) BS01 rna N/A GO:0003735 ... P0DXC2 38718836
    941740 9bdl:AL42 (2.8) BS01 rna N/A GO:0003735 ... A0A5F9D391 38718836
    941741 9bdl:AL42 (2.8) BS02 rna N/A GO:0003735 ... A0A5F9D391 38718836
    941742 9bdl:AL42 (2.8) BS03 rna N/A GO:0003735 ... A0A5F9D391 38718836
    941743 9bdl:AL43 (2.8) BS01 rna N/A GO:0003735 ... G1SY53 38718836
    941744 9bdl:ALNW (2.8) BS01 rna N/A GO:0003735 ... G1U7L1 38718836
    941745 9bdl:ANG (2.8) BS01 rna N/A GO:0003676 ... P03950 38718836
    941746 9bdl:ANG (2.8) BS02 rna N/A GO:0003676 ... P03950 38718836
    941747 9bdl:ANG (2.8) BS03 rna N/A GO:0003676 ... P03950 38718836
    941748 9bdl:ANG (2.8) BS04 rna N/A GO:0003676 ... P03950 38718836
    941749 9bdl:ARAC (2.8) BS01 rna N/A GO:0001891 ... G1SJB4 38718836
    941750 9bdl:AS00 (2.8) BS01 rna N/A GO:0003735 ... G1TJH8 38718836
    941751 9bdl:AS01 (2.8) BS01 rna N/A GO:0003735 ... G1SS70 38718836
    941752 9bdl:AS02 (2.8) BS01 rna N/A GO:0003723 ... O18789 38718836
    941753 9bdl:AS03 (2.8) BS01 rna N/A GO:0003723 ... G1TNM3 38718836
    941754 9bdl:AS04 (2.8) BS01 rna N/A GO:0003723 ... G1TA47 38718836
    941755 9bdl:AS05 (2.8) BS01 rna N/A GO:0003723 ... G1TFM5 38718836
    941756 9bdl:AS06 (2.8) BS01 rna N/A GO:0003735 ... G1TM55 38718836
    941757 9bdl:AS07 (2.8) BS01 rna N/A GO:0003735 ... G1SVB0 38718836
    941758 9bdl:AS08 (2.8) BS01 rna N/A GO:0003735 ... G1TJW1 38718836
    941759 9bdl:AS08 (2.8) BS02 rna N/A GO:0003735 ... G1TJW1 38718836
    941760 9bdl:AS09 (2.8) BS01 rna N/A GO:0003723 ... B7NZS8 38718836
    941761 9bdl:AS10 (2.8) BS01 rna N/A N/A G1TPV3 38718836
    941762 9bdl:AS11 (2.8) BS01 rna N/A GO:0003735 ... G1TRM4 38718836
    941763 9bdl:AS12 (2.8) BS01 rna N/A GO:0003735 ... G1SFR8 38718836
    941764 9bdl:AS13 (2.8) BS01 rna N/A GO:0003735 ... G1SP51 38718836
    941765 9bdl:AS13 (2.8) BS02 rna N/A GO:0003735 ... G1SP51 38718836
    941766 9bdl:AS14 (2.8) BS01 rna N/A GO:0003735 ... G1T1F0 38718836
    941767 9bdl:AS15 (2.8) BS01 rna N/A GO:0003723 ... G1U0Q2 38718836
    941768 9bdl:AS16 (2.8) BS01 rna N/A GO:0000462 ... G1SGX4 38718836
    941769 9bdl:AS17 (2.8) BS01 rna N/A GO:0003735 ... G1TU13 38718836
    941770 9bdl:AS18 (2.8) BS01 rna N/A GO:0003676 ... G1TPG3 38718836
    941771 9bdl:AS19 (2.8) BS01 rna N/A GO:0000028 ... G1TN62 38718836
    941772 9bdl:AS20 (2.8) BS01 rna N/A GO:0003723 ... G1SIZ2 38718836
    941773 9bdl:AS22 (2.8) BS01 rna N/A GO:0003735 ... G1TG89 38718836
    941774 9bdl:AS23 (2.8) BS01 rna N/A GO:0003735 ... G1SZ47 38718836
    941775 9bdl:AS24 (2.8) BS01 rna N/A GO:0003735 ... G1T3D8 38718836
    941776 9bdl:AS25 (2.8) BS01 rna N/A N/A G1TDB3 38718836
    941777 9bdl:AS26 (2.8) BS01 rna N/A GO:0003735 ... G1TFE8 38718836
    941778 9bdl:AS27 (2.8) BS01 rna N/A GO:0003735 ... G1TZ76 38718836
    941779 9bdl:AS28 (2.8) BS01 rna N/A GO:0000028 ... G1TIB4 38718836
    941780 9bdl:AS29 (2.8) BS01 rna N/A GO:0002181 ... G1U7M4 38718836
    941781 9bdl:AS30 (2.8) BS01 rna N/A GO:0003735 ... G1T8A2 38718836
    941782 9bdn:AL02 (3.1) BS01 rna N/A GO:0002181 ... G1TT27 38718836
    941783 9bdn:AL02 (3.1) BS02 rna N/A GO:0002181 ... G1TT27 38718836
    941784 9bdn:AL03 (3.1) BS01 rna N/A GO:0003723 ... G1TL06 38718836
    941785 9bdn:AL04 (3.1) BS01 rna N/A GO:0003735 ... A0A5F9DCT1 38718836
    941786 9bdn:AL04 (3.1) BS02 rna N/A GO:0003735 ... A0A5F9DCT1 38718836
    941787 9bdn:AL05 (3.1) BS01 rna N/A GO:0000027 ... P19949 38718836
    941788 9bdn:AL05 (3.1) BS02 rna N/A GO:0000027 ... P19949 38718836
    941789 9bdn:AL06 (3.1) BS01 rna N/A GO:0003735 ... G1SKF7 38718836
    941790 9bdn:AL07 (3.1) BS01 rna N/A GO:0000463 ... G1SV32 38718836
    941791 9bdn:AL07 (3.1) BS02 rna N/A GO:0000463 ... G1SV32 38718836
    941792 9bdn:AL08 (3.1) BS01 rna N/A GO:0003723 ... G1STW0 38718836
    941793 9bdn:AL08 (3.1) BS02 rna N/A GO:0003723 ... G1STW0 38718836
    941794 9bdn:AL09 (3.1) BS01 rna N/A GO:0002181 ... G1SWI6 38718836
    941795 9bdn:AL10 (3.1) BS01 rna N/A GO:0003735 ... B7NZQ2 38718836
    941796 9bdn:AL10 (3.1) BS02 rna N/A GO:0003735 ... B7NZQ2 38718836
    941797 9bdn:AL10 (3.1) BS03 rna N/A GO:0003735 ... B7NZQ2 38718836
    941798 9bdn:AL11 (3.1) BS01 rna N/A GO:0003735 ... G1TUB8 38718836
    941799 9bdn:AL11 (3.1) BS02 rna N/A GO:0003735 ... G1TUB8 38718836
    941800 9bdn:AL11 (3.1) BS03 rna N/A GO:0003735 ... G1TUB8 38718836

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).