SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    941801 9bdn:AL12 (3.1) BS01 rna N/A GO:0003735 ... G1SMR7 38718836
    941802 9bdn:AL13 (3.1) BS01 rna N/A GO:0003723 ... G1TKB3 38718836
    941803 9bdn:AL13 (3.1) BS02 rna N/A GO:0003723 ... G1TKB3 38718836
    941804 9bdn:AL14 (3.1) BS01 rna N/A GO:0003723 ... G1SZ12 38718836
    941805 9bdn:AL15 (3.1) BS01 rna N/A GO:0002181 ... G1T0C1 38718836
    941806 9bdn:AL15 (3.1) BS02 rna N/A GO:0002181 ... G1T0C1 38718836
    941807 9bdn:AL16 (3.1) BS01 rna N/A GO:0003729 ... G1TVS8 38718836
    941808 9bdn:AL17 (3.1) BS01 rna N/A GO:0003735 ... G1SCJ6 38718836
    941809 9bdn:AL17 (3.1) BS02 rna N/A GO:0003735 ... G1SCJ6 38718836
    941810 9bdn:AL18 (3.1) BS01 rna N/A GO:0003723 ... G1TFE0 38718836
    941811 9bdn:AL19 (3.1) BS01 rna N/A GO:0003723 ... G1TYL6 38718836
    941812 9bdn:AL19 (3.1) BS02 rna N/A GO:0003723 ... G1TYL6 38718836
    941813 9bdn:AL20 (3.1) BS01 rna N/A GO:0003735 ... G1TTY7 38718836
    941814 9bdn:AL20 (3.1) BS02 rna N/A GO:0003735 ... G1TTY7 38718836
    941815 9bdn:AL21 (3.1) BS01 rna N/A GO:0003735 ... G1SHQ2 38718836
    941816 9bdn:AL21 (3.1) BS02 rna N/A GO:0003735 ... G1SHQ2 38718836
    941817 9bdn:AL22 (3.1) BS01 rna N/A GO:0003735 ... G1TSG1 38718836
    941818 9bdn:AL23 (3.1) BS01 rna N/A GO:0000122 ... G1T6D1 38718836
    941819 9bdn:AL24 (3.1) BS01 rna N/A GO:0003735 ... G1SE28 38718836
    941820 9bdn:AL25 (3.1) BS01 rna N/A GO:0003735 ... G1SE76 38718836
    941821 9bdn:AL25 (3.1) BS02 rna N/A GO:0003735 ... G1SE76 38718836
    941822 9bdn:AL26 (3.1) BS01 rna N/A GO:0003723 ... G1SQH0 38718836
    941823 9bdn:AL26 (3.1) BS02 rna N/A GO:0003723 ... G1SQH0 38718836
    941824 9bdn:AL27 (3.1) BS01 rna N/A GO:0002181 ... G1TXF6 38718836
    941825 9bdn:AL28 (3.1) BS01 rna N/A GO:0003735 ... G1SNY0 38718836
    941826 9bdn:AL29 (3.1) BS01 rna N/A GO:0002181 ... G1SGR6 38718836
    941827 9bdn:AL30 (3.1) BS01 rna N/A GO:0003723 ... G1TDL2 38718836
    941828 9bdn:AL31 (3.1) BS01 rna N/A GO:0003735 ... G1SHG0 38718836
    941829 9bdn:AL32 (3.1) BS01 rna N/A GO:0003735 ... G1TUN8 38718836
    941830 9bdn:AL33 (3.1) BS01 rna N/A GO:0003735 ... G1SF08 38718836
    941831 9bdn:AL34 (3.1) BS01 rna N/A GO:0003735 ... G1TXG5 38718836
    941832 9bdn:AL35 (3.1) BS01 rna N/A GO:0000463 ... G1SIT5 38718836
    941833 9bdn:AL35 (3.1) BS02 rna N/A GO:0000463 ... G1SIT5 38718836
    941834 9bdn:AL36 (3.1) BS01 rna N/A GO:0003735 ... G1TTQ5 38718836
    941835 9bdn:AL37 (3.1) BS01 rna N/A GO:0003735 ... U3KPD5 38718836
    941836 9bdn:AL37 (3.1) BS02 rna N/A GO:0003735 ... U3KPD5 38718836
    941837 9bdn:AL38 (3.1) BS01 rna N/A GO:0003735 ... G1U001 38718836
    941838 9bdn:AL39 (3.1) BS01 rna N/A GO:0003735 ... G1TTN1 38718836
    941839 9bdn:AL39 (3.1) BS02 rna N/A GO:0003735 ... G1TTN1 38718836
    941840 9bdn:AL40 (3.1) BS01 rna N/A GO:0003735 ... P0DXC2 38718836
    941841 9bdn:AL42 (3.1) BS01 rna N/A GO:0003735 ... A0A5F9D391 38718836
    941842 9bdn:AL42 (3.1) BS02 rna N/A GO:0003735 ... A0A5F9D391 38718836
    941843 9bdn:AL42 (3.1) BS03 rna N/A GO:0003735 ... A0A5F9D391 38718836
    941844 9bdn:AL43 (3.1) BS01 rna N/A GO:0003735 ... G1SY53 38718836
    941845 9bdn:ALNW (3.1) BS01 rna N/A GO:0003735 ... G1U7L1 38718836
    941846 9bdn:ALP0 (3.1) BS01 rna N/A N/A G1SPK4 38718836
    941847 9bdn:ANG (3.1) BS01 rna N/A GO:0003676 ... P03950 38718836
    941848 9bdn:ANG (3.1) BS02 rna N/A GO:0003676 ... P03950 38718836
    941849 9bdn:ANG (3.1) BS03 rna N/A GO:0003676 ... P03950 38718836
    941850 9bdn:ANG (3.1) BS04 rna N/A GO:0003676 ... P03950 38718836
    941851 9bdn:ARAC (3.1) BS01 rna N/A GO:0001891 ... G1SJB4 38718836
    941852 9bdn:AS00 (3.1) BS01 rna N/A GO:0003735 ... G1TJH8 38718836
    941853 9bdn:AS01 (3.1) BS01 rna N/A GO:0003735 ... G1SS70 38718836
    941854 9bdn:AS02 (3.1) BS01 rna N/A GO:0003723 ... O18789 38718836
    941855 9bdn:AS03 (3.1) BS01 rna N/A GO:0003723 ... G1TNM3 38718836
    941856 9bdn:AS04 (3.1) BS01 rna N/A GO:0003723 ... G1TA47 38718836
    941857 9bdn:AS05 (3.1) BS01 rna N/A GO:0003723 ... G1TFM5 38718836
    941858 9bdn:AS06 (3.1) BS01 rna N/A GO:0003735 ... G1TM55 38718836
    941859 9bdn:AS07 (3.1) BS01 rna N/A GO:0003735 ... G1SVB0 38718836
    941860 9bdn:AS08 (3.1) BS01 rna N/A GO:0003735 ... G1TJW1 38718836
    941861 9bdn:AS08 (3.1) BS02 rna N/A GO:0003735 ... G1TJW1 38718836
    941862 9bdn:AS09 (3.1) BS01 rna N/A GO:0003723 ... B7NZS8 38718836
    941863 9bdn:AS10 (3.1) BS01 rna N/A N/A G1TPV3 38718836
    941864 9bdn:AS11 (3.1) BS01 rna N/A GO:0003735 ... G1TRM4 38718836
    941865 9bdn:AS12 (3.1) BS01 rna N/A GO:0003735 ... G1SFR8 38718836
    941866 9bdn:AS13 (3.1) BS01 rna N/A GO:0003735 ... G1SP51 38718836
    941867 9bdn:AS14 (3.1) BS01 rna N/A GO:0003735 ... G1T1F0 38718836
    941868 9bdn:AS15 (3.1) BS01 rna N/A GO:0003723 ... G1U0Q2 38718836
    941869 9bdn:AS16 (3.1) BS01 rna N/A GO:0000462 ... G1SGX4 38718836
    941870 9bdn:AS17 (3.1) BS01 rna N/A GO:0003735 ... G1TU13 38718836
    941871 9bdn:AS18 (3.1) BS01 rna N/A GO:0003676 ... G1TPG3 38718836
    941872 9bdn:AS19 (3.1) BS01 rna N/A GO:0000028 ... G1TN62 38718836
    941873 9bdn:AS20 (3.1) BS01 rna N/A GO:0003723 ... G1SIZ2 38718836
    941874 9bdn:AS22 (3.1) BS01 rna N/A GO:0003735 ... G1TG89 38718836
    941875 9bdn:AS23 (3.1) BS01 rna N/A GO:0003735 ... G1SZ47 38718836
    941876 9bdn:AS24 (3.1) BS01 rna N/A GO:0003735 ... G1T3D8 38718836
    941877 9bdn:AS25 (3.1) BS01 rna N/A N/A G1TDB3 38718836
    941878 9bdn:AS26 (3.1) BS01 rna N/A GO:0003735 ... G1TFE8 38718836
    941879 9bdn:AS27 (3.1) BS01 rna N/A GO:0003735 ... G1TZ76 38718836
    941880 9bdn:AS28 (3.1) BS01 rna N/A GO:0000028 ... G1TIB4 38718836
    941881 9bdn:AS29 (3.1) BS01 rna N/A GO:0002181 ... G1U7M4 38718836
    941882 9bdn:AS30 (3.1) BS01 rna N/A GO:0003735 ... G1T8A2 38718836
    941883 9bdp:AL02 (3.7) BS01 rna N/A GO:0002181 ... G1TT27 38718836
    941884 9bdp:AL02 (3.7) BS02 rna N/A GO:0002181 ... G1TT27 38718836
    941885 9bdp:AL03 (3.7) BS01 rna N/A GO:0003723 ... G1TL06 38718836
    941886 9bdp:AL04 (3.7) BS01 rna N/A GO:0003735 ... A0A5F9DCT1 38718836
    941887 9bdp:AL04 (3.7) BS02 rna N/A GO:0003735 ... A0A5F9DCT1 38718836
    941888 9bdp:AL05 (3.7) BS01 rna N/A GO:0000027 ... P19949 38718836
    941889 9bdp:AL05 (3.7) BS02 rna N/A GO:0000027 ... P19949 38718836
    941890 9bdp:AL06 (3.7) BS01 rna N/A GO:0003735 ... G1SKF7 38718836
    941891 9bdp:AL07 (3.7) BS01 rna N/A GO:0000463 ... G1SV32 38718836
    941892 9bdp:AL07 (3.7) BS02 rna N/A GO:0000463 ... G1SV32 38718836
    941893 9bdp:AL08 (3.7) BS01 rna N/A GO:0003723 ... G1STW0 38718836
    941894 9bdp:AL08 (3.7) BS02 rna N/A GO:0003723 ... G1STW0 38718836
    941895 9bdp:AL09 (3.7) BS01 rna N/A GO:0002181 ... G1SWI6 38718836
    941896 9bdp:AL10 (3.7) BS01 rna N/A GO:0003735 ... B7NZQ2 38718836
    941897 9bdp:AL10 (3.7) BS02 rna N/A GO:0003735 ... B7NZQ2 38718836
    941898 9bdp:AL10 (3.7) BS03 rna N/A GO:0003735 ... B7NZQ2 38718836
    941899 9bdp:AL11 (3.7) BS01 rna N/A GO:0003735 ... G1TUB8 38718836
    941900 9bdp:AL11 (3.7) BS02 rna N/A GO:0003735 ... G1TUB8 38718836
    941901 9bdp:AL11 (3.7) BS03 rna N/A GO:0003735 ... G1TUB8 38718836
    941902 9bdp:AL12 (3.7) BS01 rna N/A GO:0003735 ... G1SMR7 38718836
    941903 9bdp:AL12 (3.7) BS02 rna N/A GO:0003735 ... G1SMR7 38718836
    941904 9bdp:AL13 (3.7) BS01 rna N/A GO:0003723 ... G1TKB3 38718836
    941905 9bdp:AL13 (3.7) BS02 rna N/A GO:0003723 ... G1TKB3 38718836
    941906 9bdp:AL14 (3.7) BS01 rna N/A GO:0003723 ... G1SZ12 38718836
    941907 9bdp:AL15 (3.7) BS01 rna N/A GO:0002181 ... G1T0C1 38718836
    941908 9bdp:AL15 (3.7) BS02 rna N/A GO:0002181 ... G1T0C1 38718836
    941909 9bdp:AL16 (3.7) BS01 rna N/A GO:0003729 ... G1TVS8 38718836
    941910 9bdp:AL17 (3.7) BS01 rna N/A GO:0003735 ... G1SCJ6 38718836
    941911 9bdp:AL17 (3.7) BS02 rna N/A GO:0003735 ... G1SCJ6 38718836
    941912 9bdp:AL18 (3.7) BS01 rna N/A GO:0003723 ... G1TFE0 38718836
    941913 9bdp:AL19 (3.7) BS01 rna N/A GO:0003723 ... G1TYL6 38718836
    941914 9bdp:AL19 (3.7) BS02 rna N/A GO:0003723 ... G1TYL6 38718836
    941915 9bdp:AL20 (3.7) BS01 rna N/A GO:0003735 ... G1TTY7 38718836
    941916 9bdp:AL20 (3.7) BS02 rna N/A GO:0003735 ... G1TTY7 38718836
    941917 9bdp:AL21 (3.7) BS01 rna N/A GO:0003735 ... G1SHQ2 38718836
    941918 9bdp:AL21 (3.7) BS02 rna N/A GO:0003735 ... G1SHQ2 38718836
    941919 9bdp:AL22 (3.7) BS01 rna N/A GO:0003735 ... G1TSG1 38718836
    941920 9bdp:AL23 (3.7) BS01 rna N/A GO:0000122 ... G1T6D1 38718836
    941921 9bdp:AL23 (3.7) BS02 rna N/A GO:0000122 ... G1T6D1 38718836
    941922 9bdp:AL24 (3.7) BS01 rna N/A GO:0003735 ... G1SE28 38718836
    941923 9bdp:AL25 (3.7) BS01 rna N/A GO:0003735 ... G1SE76 38718836
    941924 9bdp:AL25 (3.7) BS02 rna N/A GO:0003735 ... G1SE76 38718836
    941925 9bdp:AL26 (3.7) BS01 rna N/A GO:0003723 ... G1SQH0 38718836
    941926 9bdp:AL26 (3.7) BS02 rna N/A GO:0003723 ... G1SQH0 38718836
    941927 9bdp:AL27 (3.7) BS01 rna N/A GO:0002181 ... G1TXF6 38718836
    941928 9bdp:AL28 (3.7) BS01 rna N/A GO:0003735 ... G1SNY0 38718836
    941929 9bdp:AL29 (3.7) BS01 rna N/A GO:0002181 ... G1SGR6 38718836
    941930 9bdp:AL30 (3.7) BS01 rna N/A GO:0003723 ... G1TDL2 38718836
    941931 9bdp:AL31 (3.7) BS01 rna N/A GO:0003735 ... G1SHG0 38718836
    941932 9bdp:AL32 (3.7) BS01 rna N/A GO:0003735 ... G1TUN8 38718836
    941933 9bdp:AL33 (3.7) BS01 rna N/A GO:0003735 ... G1SF08 38718836
    941934 9bdp:AL34 (3.7) BS01 rna N/A GO:0003735 ... G1TXG5 38718836
    941935 9bdp:AL35 (3.7) BS01 rna N/A GO:0000463 ... G1SIT5 38718836
    941936 9bdp:AL35 (3.7) BS02 rna N/A GO:0000463 ... G1SIT5 38718836
    941937 9bdp:AL36 (3.7) BS01 rna N/A GO:0003735 ... G1TTQ5 38718836
    941938 9bdp:AL37 (3.7) BS01 rna N/A GO:0003735 ... U3KPD5 38718836
    941939 9bdp:AL37 (3.7) BS02 rna N/A GO:0003735 ... U3KPD5 38718836
    941940 9bdp:AL38 (3.7) BS01 rna N/A GO:0003735 ... G1U001 38718836
    941941 9bdp:AL39 (3.7) BS01 rna N/A GO:0003735 ... G1TTN1 38718836
    941942 9bdp:AL39 (3.7) BS02 rna N/A GO:0003735 ... G1TTN1 38718836
    941943 9bdp:AL40 (3.7) BS01 rna N/A GO:0003735 ... P0DXC2 38718836
    941944 9bdp:AL42 (3.7) BS01 rna N/A GO:0003735 ... A0A5F9D391 38718836
    941945 9bdp:AL42 (3.7) BS02 rna N/A GO:0003735 ... A0A5F9D391 38718836
    941946 9bdp:AL43 (3.7) BS01 rna N/A GO:0003735 ... G1SY53 38718836
    941947 9bdp:ALNW (3.7) BS01 rna N/A GO:0003735 ... G1U7L1 38718836
    941948 9bdp:ALP0 (3.7) BS01 rna N/A N/A G1SPK4 38718836
    941949 9bdp:ANG (3.7) BS01 rna N/A GO:0003676 ... P03950 38718836
    941950 9bdp:ANG (3.7) BS02 rna N/A GO:0003676 ... P03950 38718836
    941951 9bdp:ANG (3.7) BS03 rna N/A GO:0003676 ... P03950 38718836
    941952 9bdp:ANG (3.7) BS04 rna N/A GO:0003676 ... P03950 38718836
    941953 9bdp:ARAC (3.7) BS01 rna N/A GO:0001891 ... G1SJB4 38718836
    941954 9bdp:AS00 (3.7) BS01 rna N/A GO:0003735 ... G1TJH8 38718836
    941955 9bdp:AS01 (3.7) BS01 rna N/A GO:0003735 ... G1SS70 38718836
    941956 9bdp:AS02 (3.7) BS01 rna N/A GO:0003723 ... O18789 38718836
    941957 9bdp:AS03 (3.7) BS01 rna N/A GO:0003723 ... G1TNM3 38718836
    941958 9bdp:AS04 (3.7) BS01 rna N/A GO:0003723 ... G1TA47 38718836
    941959 9bdp:AS05 (3.7) BS01 rna N/A GO:0003723 ... G1TFM5 38718836
    941960 9bdp:AS06 (3.7) BS01 rna N/A GO:0003735 ... G1TM55 38718836
    941961 9bdp:AS07 (3.7) BS01 rna N/A GO:0003735 ... G1SVB0 38718836
    941962 9bdp:AS08 (3.7) BS01 rna N/A GO:0003735 ... G1TJW1 38718836
    941963 9bdp:AS08 (3.7) BS02 rna N/A GO:0003735 ... G1TJW1 38718836
    941964 9bdp:AS09 (3.7) BS01 rna N/A GO:0003723 ... B7NZS8 38718836
    941965 9bdp:AS10 (3.7) BS01 rna N/A N/A G1TPV3 38718836
    941966 9bdp:AS11 (3.7) BS01 rna N/A GO:0003735 ... G1TRM4 38718836
    941967 9bdp:AS12 (3.7) BS01 rna N/A GO:0003735 ... G1SFR8 38718836
    941968 9bdp:AS13 (3.7) BS01 rna N/A GO:0003735 ... G1SP51 38718836
    941969 9bdp:AS13 (3.7) BS02 rna N/A GO:0003735 ... G1SP51 38718836
    941970 9bdp:AS14 (3.7) BS01 rna N/A GO:0003735 ... G1T1F0 38718836
    941971 9bdp:AS15 (3.7) BS01 rna N/A GO:0003723 ... G1U0Q2 38718836
    941972 9bdp:AS16 (3.7) BS01 rna N/A GO:0000462 ... G1SGX4 38718836
    941973 9bdp:AS17 (3.7) BS01 rna N/A GO:0003735 ... G1TU13 38718836
    941974 9bdp:AS18 (3.7) BS01 rna N/A GO:0003676 ... G1TPG3 38718836
    941975 9bdp:AS19 (3.7) BS01 rna N/A GO:0000028 ... G1TN62 38718836
    941976 9bdp:AS20 (3.7) BS01 rna N/A GO:0003723 ... G1SIZ2 38718836
    941977 9bdp:AS22 (3.7) BS01 rna N/A GO:0003735 ... G1TG89 38718836
    941978 9bdp:AS23 (3.7) BS01 rna N/A GO:0003735 ... G1SZ47 38718836
    941979 9bdp:AS24 (3.7) BS01 rna N/A GO:0003735 ... G1T3D8 38718836
    941980 9bdp:AS25 (3.7) BS01 rna N/A GO:0003735 ... N/A 38718836
    941981 9bdp:AS26 (3.7) BS01 rna N/A GO:0003735 ... G1TFE8 38718836
    941982 9bdp:AS27 (3.7) BS01 rna N/A GO:0003735 ... G1TZ76 38718836
    941983 9bdp:AS28 (3.7) BS01 rna N/A GO:0000028 ... G1TIB4 38718836
    941984 9bdp:AS29 (3.7) BS01 rna N/A GO:0002181 ... G1U7M4 38718836
    941985 9bdp:AS30 (3.7) BS01 rna N/A GO:0003735 ... G1T8A2 38718836
    941986 9bdp:EF1A (3.7) BS01 rna N/A GO:0000329 ... P02994 38718836
    941987 9bdp:EF1A (3.7) BS02 rna N/A GO:0000329 ... P02994 38718836
    941988 9bdq:A (2.26) BS01 ZN N/A GO:0000166 ... Q997F0 39837328
    941989 9bdq:A (2.26) BS02 ZN N/A GO:0000166 ... Q997F0 39837328
    941990 9bds:A (3.6) BS01 TRP N/A GO:0003723 ... Q9KCC6 39793047
    941991 9bds:A (3.6) BS02 TRP N/A GO:0003723 ... Q9KCC6 39793047
    941992 9bds:A (3.6) BS03 TRP N/A GO:0003723 ... Q9KCC6 39793047
    941993 9bds:D (3.6) BS01 TRP N/A GO:0003723 ... Q9KCC6 39793047
    941994 9bds:D (3.6) BS02 TRP N/A GO:0003723 ... Q9KCC6 39793047
    941995 9bds:D (3.6) BS03 TRP N/A GO:0003723 ... Q9KCC6 39793047
    941996 9bds:G (3.6) BS01 TRP N/A GO:0003723 ... Q9KCC6 39793047
    941997 9bds:G (3.6) BS02 TRP N/A GO:0003723 ... Q9KCC6 39793047
    941998 9bds:G (3.6) BS03 TRP N/A GO:0003723 ... Q9KCC6 39793047
    941999 9bds:J (3.6) BS01 TRP N/A GO:0003723 ... Q9KCC6 39793047
    942000 9bds:J (3.6) BS02 TRP N/A GO:0003723 ... Q9KCC6 39793047

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).