SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    942001 9bds:J (3.6) BS03 TRP N/A GO:0003723 ... Q9KCC6 39793047
    942002 9bds:M (3.6) BS01 TRP N/A GO:0003723 ... Q9KCC6 39793047
    942003 9bds:M (3.6) BS02 TRP N/A GO:0003723 ... Q9KCC6 39793047
    942004 9bds:M (3.6) BS03 TRP N/A GO:0003723 ... Q9KCC6 39793047
    942005 9bds:P (3.6) BS01 TRP N/A GO:0003723 ... Q9KCC6 39793047
    942006 9bds:P (3.6) BS02 TRP N/A GO:0003723 ... Q9KCC6 39793047
    942007 9bds:P (3.6) BS03 TRP N/A GO:0003723 ... Q9KCC6 39793047
    942008 9bdt:R (5.4) BS01 CA N/A GO:0005509 ... P01130 39663455
    942009 9bdt:R (5.4) BS02 CA N/A GO:0005509 ... P01130 39663455
    942010 9bdt:R (5.4) BS03 CA N/A GO:0005509 ... P01130 39663455
    942011 9bdt:R (5.4) BS04 CA N/A GO:0005509 ... P01130 39663455
    942012 9bdt:R (5.4) BS05 CA N/A GO:0005509 ... P01130 39663455
    942013 9bdt:R (5.4) BS06 CA N/A GO:0005509 ... P01130 39663455
    942014 9bdt:R (5.4) BS07 CA N/A GO:0005509 ... P01130 39663455
    942015 9bdu:A (2.03) BS01 dna ? GO:0003677 ... Q04207 38805268
    942016 9bdu:A (2.03) BS02 dna ? GO:0003677 ... Q04207 38805268
    942017 9bdu:B (2.03) BS01 dna ? GO:0003677 ... Q04207 38805268
    942018 9bdu:B (2.03) BS02 dna ? GO:0003677 ... Q04207 38805268
    942019 9bdv:A (1.9) BS01 dna ? GO:0003677 ... Q04207 38805268
    942020 9bdv:A (1.9) BS02 dna ? GO:0003677 ... Q04207 38805268
    942021 9bdv:B (1.9) BS01 dna ? GO:0003677 ... Q04207 38805268
    942022 9bdv:B (1.9) BS02 dna ? GO:0003677 ... Q04207 38805268
    942023 9bdw:A (1.87) BS01 dna ? GO:0003677 ... Q04207 38805268
    942024 9bdw:A (1.87) BS02 dna ? GO:0003677 ... Q04207 38805268
    942025 9bdw:B (1.87) BS01 dna ? GO:0003677 ... Q04207 38805268
    942026 9bdw:B (1.87) BS02 dna ? GO:0003677 ... Q04207 38805268
    942027 9bdx:A (3.6) BS01 dna ? GO:0003677 ... Q04207 38805268
    942028 9bdx:A (3.6) BS02 dna ? GO:0003677 ... Q04207 38805268
    942029 9bdx:B (3.6) BS01 dna ? GO:0003677 ... Q04207 38805268
    942030 9bdx:B (3.6) BS02 dna ? GO:0003677 ... Q04207 38805268
    942031 9be3:A (2.9) BS01 JQG N/A GO:0003824 ... Q70LM7 39662504
    942032 9be3:A (2.9) BS02 A1AMO N/A GO:0003824 ... Q70LM7 39662504
    942033 9be3:A (2.9) BS03 MN N/A GO:0003824 ... Q70LM7 39662504
    942034 9be3:B (2.9) BS01 JQG N/A GO:0003824 ... Q70LM7 39662504
    942035 9be3:B (2.9) BS02 MN N/A GO:0003824 ... Q70LM7 39662504
    942036 9be4:A (3.0) BS01 A1AMN N/A GO:0003824 ... Q70LM7 39662504
    942037 9be4:B (3.0) BS01 MN N/A GO:0003824 ... Q70LM7 39662504
    942038 9be5:A (3.3) BS01 dna N/A GO:0000786 ... Q71DI3 N/A
    942039 9be5:A (3.3) BS02 dna N/A GO:0000786 ... Q71DI3 N/A
    942040 9be5:B (3.3) BS01 dna N/A GO:0003677 ... A0A9J8D176 N/A
    942041 9be5:B (3.3) BS02 dna N/A GO:0003677 ... A0A9J8D176 N/A
    942042 9be5:C (3.3) BS01 dna N/A GO:0000786 ... P0C0S8 N/A
    942043 9be5:C (3.3) BS02 dna N/A GO:0000786 ... P0C0S8 N/A
    942044 9be5:D (3.3) BS01 dna N/A GO:0000786 ... P06899 N/A
    942045 9be5:D (3.3) BS02 dna N/A GO:0000786 ... P06899 N/A
    942046 9be5:E (3.3) BS01 dna N/A GO:0000786 ... Q71DI3 N/A
    942047 9be5:E (3.3) BS02 dna N/A GO:0000786 ... Q71DI3 N/A
    942048 9be5:F (3.3) BS01 dna N/A GO:0003677 ... A0A9J8D176 N/A
    942049 9be5:F (3.3) BS02 dna N/A GO:0003677 ... A0A9J8D176 N/A
    942050 9be5:G (3.3) BS01 dna N/A GO:0000786 ... P04908 N/A
    942051 9be5:G (3.3) BS02 dna N/A GO:0000786 ... P04908 N/A
    942052 9be5:H (3.3) BS01 dna N/A GO:0000786 ... P06899 N/A
    942053 9be5:H (3.3) BS02 dna N/A GO:0000786 ... P06899 N/A
    942054 9be6:A (3.0) BS01 dna N/A GO:0000786 ... Q71DI3 N/A
    942055 9be6:A (3.0) BS02 dna N/A GO:0000786 ... Q71DI3 N/A
    942056 9be6:B (3.0) BS01 dna N/A GO:0003677 ... A0A9J8D176 N/A
    942057 9be6:C (3.0) BS01 dna N/A GO:0000786 ... P0C0S8 N/A
    942058 9be6:C (3.0) BS02 dna N/A GO:0000786 ... P0C0S8 N/A
    942059 9be6:D (3.0) BS01 dna N/A GO:0000786 ... P06899 N/A
    942060 9be6:D (3.0) BS02 dna N/A GO:0000786 ... P06899 N/A
    942061 9be6:E (3.0) BS01 dna N/A GO:0000786 ... Q71DI3 N/A
    942062 9be6:E (3.0) BS02 dna N/A GO:0000786 ... Q71DI3 N/A
    942063 9be6:F (3.0) BS01 dna N/A GO:0003677 ... P62805 N/A
    942064 9be6:G (3.0) BS01 dna N/A GO:0000786 ... P04908 N/A
    942065 9be6:G (3.0) BS02 dna N/A GO:0000786 ... P04908 N/A
    942066 9be6:H (3.0) BS01 dna N/A GO:0000786 ... P06899 N/A
    942067 9be6:H (3.0) BS02 dna N/A GO:0000786 ... P06899 N/A
    942068 9be8:A (4.14) BS01 TRP N/A GO:0003723 ... Q9KCC6 39793047
    942069 9be8:A (4.14) BS02 TRP N/A GO:0003723 ... Q9KCC6 39793047
    942070 9be8:B (4.14) BS01 TRP N/A GO:0003723 ... Q9KCC6 39793047
    942071 9be8:B (4.14) BS02 TRP N/A GO:0003723 ... Q9KCC6 39793047
    942072 9be8:F (4.14) BS01 TRP N/A GO:0003723 ... Q9KCC6 39793047
    942073 9be8:F (4.14) BS02 TRP N/A GO:0003723 ... Q9KCC6 39793047
    942074 9be8:I (4.14) BS01 TRP N/A GO:0003723 ... Q9KCC6 39793047
    942075 9be8:I (4.14) BS02 TRP N/A GO:0003723 ... Q9KCC6 39793047
    942076 9be8:L (4.14) BS01 TRP N/A GO:0003723 ... Q9KCC6 39793047
    942077 9be8:L (4.14) BS02 TRP N/A GO:0003723 ... Q9KCC6 39793047
    942078 9be8:O (4.14) BS01 TRP N/A GO:0003723 ... Q9KCC6 39793047
    942079 9be8:O (4.14) BS02 TRP N/A GO:0003723 ... Q9KCC6 39793047
    942080 9be9:A (3.8) BS01 MAN N/A GO:0005198 ... A1EAI1 40835829
    942081 9be9:B (3.8) BS01 MAN N/A GO:0005198 ... A1EAI1 40835829
    942082 9be9:C (3.8) BS01 MAN N/A GO:0005198 ... A1EAI1 40835829
    942083 9beb:A (1.85) BS01 WO4 N/A GO:0015689 ... A0A0U3FVB3 40126018
    942084 9beb:A (1.85) BS02 WO4 N/A GO:0015689 ... A0A0U3FVB3 40126018
    942085 9beb:A (1.85) BS03 WO4 N/A GO:0015689 ... A0A0U3FVB3 40126018
    942086 9beb:B (1.85) BS01 WO4 N/A GO:0015689 ... A0A0U3FVB3 40126018
    942087 9beb:B (1.85) BS02 WO4 N/A GO:0015689 ... A0A0U3FVB3 40126018
    942088 9beb:B (1.85) BS03 WO4 N/A GO:0015689 ... A0A0U3FVB3 40126018
    942089 9beb:C (1.85) BS01 WO4 N/A GO:0015689 ... A0A0U3FVB3 40126018
    942090 9beb:C (1.85) BS02 WO4 N/A GO:0015689 ... A0A0U3FVB3 40126018
    942091 9beb:C (1.85) BS03 WO4 N/A GO:0015689 ... A0A0U3FVB3 40126018
    942092 9beb:D (1.85) BS01 WO4 N/A GO:0015689 ... A0A0U3FVB3 40126018
    942093 9beb:D (1.85) BS02 WO4 N/A GO:0015689 ... A0A0U3FVB3 40126018
    942094 9beb:D (1.85) BS03 WO4 N/A GO:0015689 ... A0A0U3FVB3 40126018
    942095 9beb:E (1.85) BS01 WO4 N/A GO:0015689 ... A0A0U3FVB3 40126018
    942096 9beb:E (1.85) BS02 WO4 N/A GO:0015689 ... A0A0U3FVB3 40126018
    942097 9beb:E (1.85) BS03 WO4 N/A GO:0015689 ... A0A0U3FVB3 40126018
    942098 9beb:F (1.85) BS01 WO4 N/A GO:0015689 ... A0A0U3FVB3 40126018
    942099 9beb:F (1.85) BS02 WO4 N/A GO:0015689 ... A0A0U3FVB3 40126018
    942100 9beb:F (1.85) BS03 WO4 N/A GO:0015689 ... A0A0U3FVB3 40126018
    942101 9bed:A (2.02) BS01 MOO N/A GO:0015689 ... A0A0U3FVB3 40126018
    942102 9bed:A (2.02) BS02 MOO N/A GO:0015689 ... A0A0U3FVB3 40126018
    942103 9bed:A (2.02) BS03 MOO N/A GO:0015689 ... A0A0U3FVB3 40126018
    942104 9bed:B (2.02) BS01 MOO N/A GO:0015689 ... A0A0U3FVB3 40126018
    942105 9bed:B (2.02) BS02 MOO N/A GO:0015689 ... A0A0U3FVB3 40126018
    942106 9bed:B (2.02) BS03 MOO N/A GO:0015689 ... A0A0U3FVB3 40126018
    942107 9bed:C (2.02) BS01 MOO N/A GO:0015689 ... A0A0U3FVB3 40126018
    942108 9bed:C (2.02) BS02 MOO N/A GO:0015689 ... A0A0U3FVB3 40126018
    942109 9bed:C (2.02) BS03 MOO N/A GO:0015689 ... A0A0U3FVB3 40126018
    942110 9bed:D (2.02) BS01 MOO N/A GO:0015689 ... A0A0U3FVB3 40126018
    942111 9bed:D (2.02) BS02 MOO N/A GO:0015689 ... A0A0U3FVB3 40126018
    942112 9bed:D (2.02) BS03 MOO N/A GO:0015689 ... A0A0U3FVB3 40126018
    942113 9bed:E (2.02) BS01 MOO N/A GO:0015689 ... A0A0U3FVB3 40126018
    942114 9bed:E (2.02) BS02 MOO N/A GO:0015689 ... A0A0U3FVB3 40126018
    942115 9bed:E (2.02) BS03 MOO N/A GO:0015689 ... A0A0U3FVB3 40126018
    942116 9bed:F (2.02) BS01 MOO N/A GO:0015689 ... A0A0U3FVB3 40126018
    942117 9bed:F (2.02) BS02 MOO N/A GO:0015689 ... A0A0U3FVB3 40126018
    942118 9bed:F (2.02) BS03 MOO N/A GO:0015689 ... A0A0U3FVB3 40126018
    942119 9bef:A (2.1) BS01 A1APD N/A N/A A0A2K4XG29 N/A
    942120 9bef:A (2.1) BS02 A1APB N/A N/A A0A2K4XG29 N/A
    942121 9bef:A (2.1) BS03 A1APD N/A N/A A0A2K4XG29 N/A
    942122 9bef:A (2.1) BS04 CA N/A N/A A0A2K4XG29 N/A
    942123 9bef:B (2.1) BS01 A1APD N/A N/A A0A2K4XG29 N/A
    942124 9bef:B (2.1) BS02 A1APB N/A N/A A0A2K4XG29 N/A
    942125 9bef:B (2.1) BS03 A1APD N/A N/A A0A2K4XG29 N/A
    942126 9bef:B (2.1) BS04 CA N/A N/A A0A2K4XG29 N/A
    942127 9beh:A (2.247) BS01 CA N/A N/A A0A2K4XG31 N/A
    942128 9beh:A (2.247) BS02 G6S N/A N/A A0A2K4XG31 N/A
    942129 9beh:A (2.247) BS03 G6S N/A N/A A0A2K4XG31 N/A
    942130 9beh:A (2.247) BS04 A1APC N/A N/A A0A2K4XG31 N/A
    942131 9beh:B (2.247) BS01 CA N/A N/A A0A2K4XG31 N/A
    942132 9beh:B (2.247) BS02 G6S N/A N/A A0A2K4XG31 N/A
    942133 9beh:B (2.247) BS03 G6S N/A N/A A0A2K4XG31 N/A
    942134 9beh:B (2.247) BS04 A1APC N/A N/A A0A2K4XG31 N/A
    942135 9bel:A (2.68) BS01 WO4 N/A GO:0015689 ... A0A0U3FVB3 40126018
    942136 9bel:A (2.68) BS02 WO4 N/A GO:0015689 ... A0A0U3FVB3 40126018
    942137 9bel:B (2.68) BS01 WO4 N/A GO:0015689 ... A0A0U3FVB3 40126018
    942138 9bel:C (2.68) BS01 WO4 N/A GO:0015689 ... A0A0U3FVB3 40126018
    942139 9bel:D (2.68) BS01 WO4 N/A GO:0015689 ... A0A0U3FVB3 40126018
    942140 9bel:D (2.68) BS02 WO4 N/A GO:0015689 ... A0A0U3FVB3 40126018
    942141 9bel:E (2.68) BS01 WO4 N/A GO:0015689 ... A0A0U3FVB3 40126018
    942142 9bel:E (2.68) BS02 WO4 N/A GO:0015689 ... A0A0U3FVB3 40126018
    942143 9bel:F (2.68) BS01 WO4 N/A GO:0015689 ... A0A0U3FVB3 40126018
    942144 9bel:F (2.68) BS02 WO4 N/A GO:0015689 ... A0A0U3FVB3 40126018
    942145 9bem:A (2.26) BS01 WO4 N/A GO:0015689 ... A0A0U3FVB3 40126018
    942146 9bem:A (2.26) BS02 WO4 N/A GO:0015689 ... A0A0U3FVB3 40126018
    942147 9bem:B (2.26) BS01 WO4 N/A GO:0015689 ... A0A0U3FVB3 40126018
    942148 9bem:B (2.26) BS02 WO4 N/A GO:0015689 ... A0A0U3FVB3 40126018
    942149 9bem:B (2.26) BS03 WO4 N/A GO:0015689 ... A0A0U3FVB3 40126018
    942150 9bem:C (2.26) BS01 WO4 N/A GO:0015689 ... A0A0U3FVB3 40126018
    942151 9bem:C (2.26) BS02 WO4 N/A GO:0015689 ... A0A0U3FVB3 40126018
    942152 9bem:C (2.26) BS03 WO4 N/A GO:0015689 ... A0A0U3FVB3 40126018
    942153 9bem:D (2.26) BS01 WO4 N/A GO:0015689 ... A0A0U3FVB3 40126018
    942154 9bem:D (2.26) BS02 WO4 N/A GO:0015689 ... A0A0U3FVB3 40126018
    942155 9bem:E (2.26) BS01 WO4 N/A GO:0015689 ... A0A0U3FVB3 40126018
    942156 9bem:E (2.26) BS02 WO4 N/A GO:0015689 ... A0A0U3FVB3 40126018
    942157 9bem:E (2.26) BS03 WO4 N/A GO:0015689 ... A0A0U3FVB3 40126018
    942158 9bem:F (2.26) BS01 WO4 N/A GO:0015689 ... A0A0U3FVB3 40126018
    942159 9bem:F (2.26) BS02 WO4 N/A GO:0015689 ... A0A0U3FVB3 40126018
    942160 9beo:A (1.78) BS01 WO4 N/A GO:0015689 ... A0A0U3FVB3 N/A
    942161 9beo:A (1.78) BS02 WO4 N/A GO:0015689 ... A0A0U3FVB3 N/A
    942162 9beo:A (1.78) BS03 WO4 N/A GO:0015689 ... A0A0U3FVB3 N/A
    942163 9beo:B (1.78) BS01 WO4 N/A GO:0015689 ... A0A0U3FVB3 N/A
    942164 9beo:B (1.78) BS02 WO4 N/A GO:0015689 ... A0A0U3FVB3 N/A
    942165 9beo:B (1.78) BS03 WO4 N/A GO:0015689 ... A0A0U3FVB3 N/A
    942166 9beo:C (1.78) BS01 WO4 N/A GO:0015689 ... A0A0U3FVB3 N/A
    942167 9beo:C (1.78) BS02 WO4 N/A GO:0015689 ... A0A0U3FVB3 N/A
    942168 9beo:C (1.78) BS03 WO4 N/A GO:0015689 ... A0A0U3FVB3 N/A
    942169 9beo:D (1.78) BS01 WO4 N/A GO:0015689 ... A0A0U3FVB3 N/A
    942170 9beo:D (1.78) BS02 WO4 N/A GO:0015689 ... A0A0U3FVB3 N/A
    942171 9beo:D (1.78) BS03 WO4 N/A GO:0015689 ... A0A0U3FVB3 N/A
    942172 9beo:E (1.78) BS01 WO4 N/A GO:0015689 ... A0A0U3FVB3 N/A
    942173 9beo:E (1.78) BS02 WO4 N/A GO:0015689 ... A0A0U3FVB3 N/A
    942174 9beo:E (1.78) BS03 WO4 N/A GO:0015689 ... A0A0U3FVB3 N/A
    942175 9beo:F (1.78) BS01 WO4 N/A GO:0015689 ... A0A0U3FVB3 N/A
    942176 9beo:F (1.78) BS02 WO4 N/A GO:0015689 ... A0A0U3FVB3 N/A
    942177 9bep:A (1.898) BS01 A1APD N/A GO:0004065 ... A0A2K4XG28 N/A
    942178 9bep:A (1.898) BS02 A1APB N/A GO:0004065 ... A0A2K4XG28 N/A
    942179 9bep:A (1.898) BS03 CA N/A GO:0004065 ... A0A2K4XG28 N/A
    942180 9bep:B (1.898) BS01 CA N/A GO:0004065 ... A0A2K4XG28 N/A
    942181 9bep:B (1.898) BS02 A1APB N/A GO:0004065 ... A0A2K4XG28 N/A
    942182 9beq:A (2.6) BS01 AP1 N/A GO:0003677 ... O75469 39389062
    942183 9ber:H (4.1) BS01 BMA N/A N/A N/A 39028623
    942184 9bes:A (2.079) BS01 GAL N/A GO:0004065 ... A0A2K4XG66 N/A
    942185 9bes:A (2.079) BS02 CA N/A GO:0004065 ... A0A2K4XG66 N/A
    942186 9bes:B (2.079) BS01 CA N/A N/A N/A N/A
    942187 9beu:A (2.4) BS01 A1APD N/A GO:0004557 ... A0A8I3AZV9 N/A
    942188 9beu:A (2.4) BS02 A1APB N/A GO:0004557 ... A0A8I3AZV9 N/A
    942189 9beu:A (2.4) BS03 GLA N/A GO:0004557 ... A0A8I3AZV9 N/A
    942190 9beu:B (2.4) BS01 A1APB N/A GO:0004557 ... A0A8I3AZV9 N/A
    942191 9beu:B (2.4) BS02 A1APD N/A GO:0004557 ... A0A8I3AZV9 N/A
    942192 9beu:B (2.4) BS03 A1APB N/A GO:0004557 ... A0A8I3AZV9 N/A
    942193 9beu:B (2.4) BS04 GLA N/A GO:0004557 ... A0A8I3AZV9 N/A
    942194 9bev:A (2.59) BS01 A1APB N/A N/A A0A2K4XG31 N/A
    942195 9bev:A (2.59) BS02 A1APC N/A N/A A0A2K4XG31 N/A
    942196 9bev:A (2.59) BS03 MG N/A N/A A0A2K4XG31 N/A
    942197 9bev:B (2.59) BS01 A1APB N/A N/A A0A2K4XG31 N/A
    942198 9bev:B (2.59) BS02 A1APC N/A N/A A0A2K4XG31 N/A
    942199 9bev:B (2.59) BS03 MG N/A N/A A0A2K4XG31 N/A
    942200 9bew:K (3.3) BS01 MAN N/A N/A N/A 39028623

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).