SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    942201 9k8w:A (2.65) BS04 CA N/A GO:0000086 ... P0DP23
    P42212
    39684209
    942202 9k8x:A (2.05) BS01 CA N/A GO:0000086 ... P0DP23
    P42212
    39684209
    942203 9k8x:A (2.05) BS02 CA N/A GO:0000086 ... P0DP23
    P42212
    39684209
    942204 9k8x:A (2.05) BS03 CA N/A GO:0000086 ... P0DP23
    P42212
    39684209
    942205 9k8x:A (2.05) BS04 CA N/A GO:0000086 ... P0DP23
    P42212
    39684209
    942206 9kae:A (3.1) BS01 dna N/A N/A P03070 N/A
    942207 9kae:A (3.1) BS02 ANP N/A N/A P03070 N/A
    942208 9kae:A (3.1) BS03 MG N/A N/A P03070 N/A
    942209 9kae:A (3.1) BS04 ANP N/A N/A P03070 N/A
    942210 9kae:B (3.1) BS01 dna N/A N/A P03070 N/A
    942211 9kae:B (3.1) BS02 ANP N/A N/A P03070 N/A
    942212 9kae:B (3.1) BS03 MG N/A N/A P03070 N/A
    942213 9kae:B (3.1) BS04 ANP N/A N/A P03070 N/A
    942214 9kae:C (3.1) BS01 dna N/A N/A P03070 N/A
    942215 9kae:C (3.1) BS02 ANP N/A N/A P03070 N/A
    942216 9kae:C (3.1) BS03 ANP N/A N/A P03070 N/A
    942217 9kae:D (3.1) BS01 dna N/A N/A P03070 N/A
    942218 9kae:D (3.1) BS02 ANP N/A N/A P03070 N/A
    942219 9kae:D (3.1) BS03 ANP N/A N/A P03070 N/A
    942220 9kae:E (3.1) BS01 dna N/A N/A P03070 N/A
    942221 9kae:E (3.1) BS02 dna N/A N/A P03070 N/A
    942222 9kae:E (3.1) BS03 ANP N/A N/A P03070 N/A
    942223 9kae:E (3.1) BS04 ANP N/A N/A P03070 N/A
    942224 9kae:F (3.1) BS01 dna N/A N/A P03070 N/A
    942225 9kae:F (3.1) BS02 dna N/A N/A P03070 N/A
    942226 9kae:F (3.1) BS03 ANP N/A N/A P03070 N/A
    942227 9kak:A (3.1) BS01 dna N/A N/A P03070 N/A
    942228 9kak:A (3.1) BS02 ANP N/A N/A P03070 N/A
    942229 9kak:A (3.1) BS03 MG N/A N/A P03070 N/A
    942230 9kak:B (3.1) BS01 dna N/A N/A P03070 N/A
    942231 9kak:B (3.1) BS02 ANP N/A N/A P03070 N/A
    942232 9kak:B (3.1) BS03 MG N/A N/A P03070 N/A
    942233 9kak:B (3.1) BS04 ANP N/A N/A P03070 N/A
    942234 9kak:C (3.1) BS01 dna N/A N/A P03070 N/A
    942235 9kak:C (3.1) BS02 dna N/A N/A P03070 N/A
    942236 9kak:C (3.1) BS03 ANP N/A N/A P03070 N/A
    942237 9kak:C (3.1) BS04 ANP N/A N/A P03070 N/A
    942238 9kak:D (3.1) BS01 dna N/A N/A P03070 N/A
    942239 9kak:D (3.1) BS02 ANP N/A N/A P03070 N/A
    942240 9kak:E (3.1) BS01 dna N/A N/A P03070 N/A
    942241 9kak:E (3.1) BS02 dna N/A N/A P03070 N/A
    942242 9kak:E (3.1) BS03 ANP N/A N/A P03070 N/A
    942243 9kak:F (3.1) BS01 dna N/A N/A P03070 N/A
    942244 9kak:F (3.1) BS02 dna N/A N/A P03070 N/A
    942245 9kak:F (3.1) BS03 ANP N/A N/A P03070 N/A
    942246 9kak:F (3.1) BS04 MG N/A N/A P03070 N/A
    942247 9kau:A (1.88) BS01 OO0 N/A GO:0016829 ... A0A9X7GT53 N/A
    942248 9kbd:A (3.7) BS01 peptide N/A N/A Q13616 N/A
    942249 9khv:A (2.55) BS01 dna N/A N/A Q9KR72 39907109
    942250 9khv:B (2.55) BS01 dna N/A N/A Q9KR72 39907109
    942251 9khz:A (3.03) BS01 dna N/A N/A B9TSM3 39907109
    942252 9khz:A (3.03) BS02 ADP N/A N/A B9TSM3 39907109
    942253 9khz:B (3.03) BS01 dna N/A N/A B9TSM3 39907109
    942254 9khz:B (3.03) BS02 ADP N/A N/A B9TSM3 39907109
    942255 9ki0:A (2.65) BS01 dna N/A N/A Q9KR72 39907109
    942256 9ki0:A (2.65) BS02 AGS N/A N/A Q9KR72 39907109
    942257 9ki0:A (2.65) BS03 MG N/A N/A Q9KR72 39907109
    942258 9ki0:B (2.65) BS01 dna N/A N/A Q9KR72 39907109
    942259 9ki0:B (2.65) BS02 AGS N/A N/A Q9KR72 39907109
    942260 9ki0:B (2.65) BS03 MG N/A N/A Q9KR72 39907109
    942261 9ki1:G (3.3) BS01 peptide N/A N/A P08558 N/A
    942262 9ki1:N (3.3) BS01 peptide N/A N/A P08558 N/A
    942263 9ki1:U (3.3) BS01 peptide N/A N/A P08558 N/A
    942264 9ki1:V (3.3) BS01 peptide N/A N/A Q9T1V4 N/A
    942265 9ki1:V (3.3) BS02 peptide N/A N/A Q9T1V4 N/A
    942266 9ki1:V (3.3) BS03 FE N/A N/A Q9T1V4 N/A
    942267 9ki1:W (3.3) BS01 peptide N/A N/A Q9T1V4 N/A
    942268 9ki1:W (3.3) BS02 peptide N/A N/A Q9T1V4 N/A
    942269 9ki1:W (3.3) BS03 FE N/A N/A Q9T1V4 N/A
    942270 9ki1:X (3.3) BS01 peptide N/A N/A Q9T1V4 N/A
    942271 9ki1:X (3.3) BS02 peptide N/A N/A Q9T1V4 N/A
    942272 9ki1:X (3.3) BS03 FE N/A N/A Q9T1V4 N/A
    942273 9kk7:A (1.8) BS01 FDA N/A N/A N/A 39913263
    942274 9kkc:A (1.8) BS01 FAD N/A N/A N/A 39913263
    942275 9kkg:A (1.15) BS01 FAD N/A N/A N/A 39913263
    942276 9kkh:A (1.1) BS01 FDA N/A N/A N/A 39913263
    942277 9kok:A (2.4) BS01 NAD N/A N/A Q9I2C4 39642707
    942278 9kok:B (2.4) BS01 NAD N/A N/A Q9I2C4 39642707
    942279 9kpy:A (2.2) BS01 peptide N/A GO:0004595 ... A4W515 N/A
    942280 9kpy:A (2.2) BS02 PAE N/A GO:0004595 ... A4W515 N/A
    942281 9kpy:B (2.2) BS01 PAE N/A GO:0004595 ... A4W515 N/A
    942282 9kpy:B (2.2) BS02 PAE N/A GO:0004595 ... A4W515 N/A
    942283 9kpy:C (2.2) BS01 peptide N/A GO:0004595 ... A4W515 N/A
    942284 9kpy:C (2.2) BS02 PAE N/A GO:0004595 ... A4W515 N/A
    942285 9kpy:D (2.2) BS01 PAE N/A GO:0004595 ... A4W515 N/A
    942286 9kpy:D (2.2) BS02 PAE N/A GO:0004595 ... A4W515 N/A
    942287 9kpy:D (2.2) BS03 PAE N/A GO:0004595 ... A4W515 N/A
    942288 9kpy:E (2.2) BS01 PAE N/A GO:0004595 ... A4W515 N/A
    942289 9kpy:F (2.2) BS01 PAE N/A GO:0004595 ... A4W515 N/A
    942290 9kpy:F (2.2) BS02 PAE N/A GO:0004595 ... A4W515 N/A
    942291 9kq8:A (3.38) BS01 XW7 N/A N/A P0ABE7
    Q05940
    39747030
    942292 9kqa:A (3.28) BS01 EBZ N/A N/A P0ABE7
    Q05940
    39747030
    942293 9kqe:A (3.0) BS01 LDP N/A N/A P0ABE7
    Q05940
    39747030
    942294 9krc:A (1.4) BS01 HEC N/A N/A P25935 39859539
    942295 9krc:B (1.4) BS01 HEC N/A N/A P25935 39859539
    942296 9krd:A (1.7) BS01 HEC N/A N/A P25935 39859539
    942297 9krd:B (1.7) BS01 HEC N/A N/A P25935 39859539
    942298 9krd:C (1.7) BS01 HEC N/A N/A P25935 39859539
    942299 9krd:D (1.7) BS01 HEC N/A N/A P25935 39859539
    942300 9krr:A (1.93) BS01 HEC N/A N/A P46445 39859539
    942301 9krr:B (1.93) BS01 HEC N/A N/A P46445 39859539
    942302 9krr:C (1.93) BS01 HEC N/A N/A P46445 39859539
    942303 9krr:D (1.93) BS01 HEC N/A N/A P46445 39859539
    942304 9krr:E (1.93) BS01 HEC N/A N/A P46445 39859539
    942305 9krr:F (1.93) BS01 HEC N/A N/A P46445 39859539
    942306 9krr:G (1.93) BS01 HEC N/A N/A P46445 39859539
    942307 9krr:H (1.93) BS01 HEC N/A N/A P46445 39859539
    942308 9krr:I (1.93) BS01 HEC N/A N/A P46445 39859539
    942309 9krr:J (1.93) BS01 HEC N/A N/A P46445 39859539
    942310 9krr:K (1.93) BS01 HEC N/A N/A P46445 39859539
    942311 9krr:L (1.93) BS01 HEC N/A N/A P46445 39859539
    942312 9kti:A (2.59) BS01 FE2 N/A N/A P0ABR9 39892151
    942313 9kti:A (2.59) BS02 A1EG2 N/A N/A P0ABR9 39892151
    942314 9kti:B (2.59) BS01 FE2 N/A N/A P0ABR9 39892151
    942315 9kti:B (2.59) BS02 A1EG2 N/A N/A P0ABR9 39892151
    942316 9kti:C (2.59) BS01 A1EG2 N/A N/A P0ABR9 39892151
    942317 9kti:C (2.59) BS02 FE2 N/A N/A P0ABR9 39892151
    942318 9kti:D (2.59) BS01 FE2 N/A N/A P0ABR9 39892151
    942319 9kti:D (2.59) BS02 A1EG2 N/A N/A P0ABR9 39892151
    942320 9kti:E (2.59) BS01 FE2 N/A N/A P0ABR9 39892151
    942321 9kti:E (2.59) BS02 A1EG2 N/A N/A P0ABR9 39892151
    942322 9kti:F (2.59) BS01 FE2 N/A N/A P0ABR9 39892151
    942323 9kti:F (2.59) BS02 A1EG2 N/A N/A P0ABR9 39892151
    942324 9kti:G (2.59) BS01 FE2 N/A N/A P0ABR9 39892151
    942325 9kti:G (2.59) BS02 A1EG2 N/A N/A P0ABR9 39892151
    942326 9kti:H (2.59) BS01 FE2 N/A N/A P0ABR9 39892151
    942327 9kti:H (2.59) BS02 A1EG2 N/A N/A P0ABR9 39892151
    942328 9kti:I (2.59) BS01 FE2 N/A N/A P0ABR9 39892151
    942329 9kti:I (2.59) BS02 A1EG2 N/A N/A P0ABR9 39892151
    942330 9kti:J (2.59) BS01 FE2 N/A N/A P0ABR9 39892151
    942331 9kti:J (2.59) BS02 A1EG2 N/A N/A P0ABR9 39892151
    942332 9ku6:A (1.72) BS01 NO2 N/A N/A P80025 N/A
    942333 9ku6:A (1.72) BS02 NO N/A N/A P80025 N/A
    942334 9ku6:A (1.72) BS03 NO N/A N/A P80025 N/A
    942335 9ku6:A (1.72) BS04 HEM N/A N/A P80025 N/A
    942336 9ku6:A (1.72) BS05 CA N/A N/A P80025 N/A
    942337 9kwl:A (1.83) BS01 A1EIY N/A N/A P23141 39691824
    942338 9kwl:A (1.83) BS02 MG N/A N/A P23141 39691824
    942339 9kwm:A (1.89) BS01 A1EIZ N/A N/A P23141 39691824
    942340 9kx8:B (2.28) BS01 ZCD N/A N/A P81446 N/A
    942341 9kz4:A (1.708) BS01 NDP N/A N/A P0ABQ4 N/A
    942342 9kz4:A (1.708) BS02 A1EHX N/A N/A P0ABQ4 N/A
    942343 9kz4:A (1.708) BS03 MG N/A N/A P0ABQ4 N/A
    942344 9kz4:A (1.708) BS04 MG N/A N/A P0ABQ4 N/A
    942345 9kz4:B (1.708) BS01 NDP N/A N/A P0ABQ4 N/A
    942346 9kz4:B (1.708) BS02 A1EHX N/A N/A P0ABQ4 N/A
    942347 9kz4:B (1.708) BS03 MG N/A N/A P0ABQ4 N/A
    942348 9kzl:A (2.0) BS01 CU N/A N/A A0A7R6RYX0 N/A
    942349 9kzl:A (2.0) BS02 CU N/A N/A A0A7R6RYX0 N/A
    942350 9kzl:B (2.0) BS01 CU N/A N/A A0A7R6RYX0 N/A
    942351 9kzl:B (2.0) BS02 CU N/A N/A A0A7R6RYX0 N/A
    942352 9kzl:B (2.0) BS03 O N/A N/A A0A7R6RYX0 N/A
    942353 9kzl:B (2.0) BS04 O N/A N/A A0A7R6RYX0 N/A
    942354 9kzl:C (2.0) BS01 CU N/A N/A A0A7R6RYX0 N/A
    942355 9kzl:C (2.0) BS02 CU N/A N/A A0A7R6RYX0 N/A
    942356 9l8g:A (1.35) BS01 FAD N/A N/A N/A 39913263
    942357 9ldb:A (2.2) BS01 NAD 1.1.1.27 GO:0003824 ... P00339 1678537
    942358 9ldb:B (2.2) BS01 NAD 1.1.1.27 GO:0003824 ... P00339 1678537
    942359 9ldt:A (2.0) BS01 NAD 1.1.1.27 GO:0003824 ... P00339 1678537
    942360 9ldt:B (2.0) BS01 NAD 1.1.1.27 GO:0003824 ... P00339 1678537
    942361 9ljj:A (3.23) BS01 RET N/A N/A A0A2R4S913 39889627
    942362 9ljj:B (3.23) BS01 RET N/A N/A A0A2R4S913 39889627
    942363 9lpr:A (2.2) BS01 peptide 3.4.21.12 GO:0004252 ... P00778 1931963
    942364 9lrj:A (3.11) BS01 U2F N/A N/A A0A8K1ZRH3 N/A
    942365 9lrj:A (3.11) BS02 T83 N/A N/A A0A8K1ZRH3 N/A
    942366 9lrj:B (3.11) BS01 U2F N/A N/A A0A8K1ZRH3 N/A
    942367 9lrj:C (3.11) BS01 U2F N/A N/A A0A8K1ZRH3 N/A
    942368 9lrj:C (3.11) BS02 T83 N/A N/A A0A8K1ZRH3 N/A
    942369 9lrj:D (3.11) BS01 U2F N/A N/A A0A8K1ZRH3 N/A
    942370 9lrj:D (3.11) BS02 T83 N/A N/A A0A8K1ZRH3 N/A
    942371 9lrj:E (3.11) BS01 U2F N/A N/A A0A8K1ZRH3 N/A
    942372 9lrj:F (3.11) BS01 U2F N/A N/A A0A8K1ZRH3 N/A
    942373 9lrj:F (3.11) BS02 T83 N/A N/A A0A8K1ZRH3 N/A
    942374 9lrj:G (3.11) BS01 U2F N/A N/A A0A8K1ZRH3 N/A
    942375 9lyz:A (2.5) BS01 AMU 3.2.1.17 GO:0003796 ... P00698 514367
    942376 9mcz:A (1.89) BS01 A1BJC N/A N/A Q8RR30 39763734
    942377 9md0:A (2.613) BS01 A1BJB N/A N/A Q8RR30 39763734
    942378 9mdc:A (1.25) BS01 ZN N/A N/A Q8N884 39691514
    942379 9mdc:A (1.25) BS02 A1BJA N/A N/A Q8N884 39691514
    942380 9mdc:A (1.25) BS03 ANP N/A N/A Q8N884 39691514
    942381 9mdc:A (1.25) BS04 MN N/A N/A Q8N884 39691514
    942382 9mdc:A (1.25) BS05 MN N/A N/A Q8N884 39691514
    942383 9mdd:A (1.6) BS01 ZN N/A N/A Q8N884 39691514
    942384 9mdd:A (1.6) BS02 A1BJD N/A N/A Q8N884 39691514
    942385 9mdd:A (1.6) BS03 ANP N/A N/A Q8N884 39691514
    942386 9mdd:A (1.6) BS04 MN N/A N/A Q8N884 39691514
    942387 9mdd:A (1.6) BS05 MN N/A N/A Q8N884 39691514
    942388 9mdk:A (1.93) BS01 E64 N/A N/A Q73QT1 39846228
    942389 9mdt:A (2.16) BS01 ATP N/A GO:0003872 ... O61068 N/A
    942390 9mdt:B (2.16) BS01 ATP N/A GO:0003872 ... O61068 N/A
    942391 9mdt:B (2.16) BS02 ATP N/A GO:0003872 ... O61068 N/A
    942392 9mdt:C (2.16) BS01 ATP N/A GO:0003872 ... O61068 N/A
    942393 9mdt:C (2.16) BS02 AMP N/A GO:0003872 ... O61068 N/A
    942394 9mdt:D (2.16) BS01 ATP N/A GO:0003872 ... O61068 N/A
    942395 9mdt:D (2.16) BS02 ATP N/A GO:0003872 ... O61068 N/A
    942396 9mea:A (2.83) BS01 FBP N/A GO:0003872 ... O61068 N/A
    942397 9mea:A (2.83) BS02 AMP N/A GO:0003872 ... O61068 N/A
    942398 9mea:A (2.83) BS03 AMP N/A GO:0003872 ... O61068 N/A
    942399 9mea:B (2.83) BS01 AMP N/A GO:0003872 ... O61068 N/A
    942400 9mea:B (2.83) BS02 FBP N/A GO:0003872 ... O61068 N/A

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).