SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    942601 9bhq:C (1.9) BS01 ZNI N/A GO:0003924 ... P01116 39476862
    942602 9bhq:C (1.9) BS02 GDP N/A GO:0003924 ... P01116 39476862
    942603 9bhq:C (1.9) BS03 AF3 N/A GO:0003924 ... P01116 39476862
    942604 9bhq:C (1.9) BS04 MG N/A GO:0003924 ... P01116 39476862
    942605 9bhq:D (1.9) BS01 ZNI N/A GO:0000413 ... P62937 39476862
    942606 9bhr:A (1.62) BS01 A1API 2.7.11.1 GO:0016567 ... Q9Y4B6 N/A
    942607 9bhr:B (1.62) BS01 A1API 2.7.11.1 GO:0016567 ... Q9Y4B6 N/A
    942608 9bhs:A (1.43) BS01 A1APJ 2.7.11.1 GO:0016567 ... Q9Y4B6 N/A
    942609 9bhs:B (1.43) BS01 A1APJ 2.7.11.1 GO:0016567 ... Q9Y4B6 N/A
    942610 9bht:A (3.26) BS01 GDP N/A GO:0005525 ... A0AAX7FM32 38960133
    942611 9bht:A (3.26) BS02 GTP N/A GO:0005525 ... A0AAX7FM32 38960133
    942612 9bht:B (3.26) BS01 GDP N/A GO:0003924 ... F6V5P8 38960133
    942613 9bht:B (3.26) BS02 GTP N/A GO:0003924 ... F6V5P8 38960133
    942614 9bht:C (3.26) BS01 GDP N/A GO:0003924 ... H2Y169 38960133
    942615 9bht:C (3.26) BS02 GDP N/A GO:0003924 ... H2Y169 38960133
    942616 9bht:D (3.26) BS01 GDP N/A GO:0003924 ... H2Y169 38960133
    942617 9bht:D (3.26) BS02 GDP N/A GO:0003924 ... H2Y169 38960133
    942618 9bht:E (3.26) BS01 GTP N/A GO:0003924 ... F6V5P8 38960133
    942619 9bht:E (3.26) BS02 GDP N/A GO:0003924 ... F6V5P8 38960133
    942620 9bht:F (3.26) BS01 GDP N/A GO:0005525 ... A0AAX7FM32 38960133
    942621 9bhu:A (2.71) BS01 CA N/A GO:0003700 ... B1VVB5 39521781
    942622 9bhv:A (3.02) BS01 CA N/A GO:0003700 ... B1VVB5 39521781
    942623 9bhw:A (2.72) BS01 GDP N/A GO:0003924 ... H2Y169 38960133
    942624 9bhw:A (2.72) BS02 GDP N/A GO:0003924 ... H2Y169 38960133
    942625 9bhw:B (2.72) BS01 GDP N/A GO:0003924 ... F7AQE7 38960133
    942626 9bhw:B (2.72) BS02 GDP N/A GO:0003924 ... F7AQE7 38960133
    942627 9bhw:C (2.72) BS01 GDP N/A GO:0003924 ... F7AQE7 38960133
    942628 9bhw:C (2.72) BS02 GDP N/A GO:0003924 ... F7AQE7 38960133
    942629 9bhw:D (2.72) BS01 GDP N/A GO:0003924 ... H2Y169 38960133
    942630 9bhw:D (2.72) BS02 GDP N/A GO:0003924 ... H2Y169 38960133
    942631 9bhy:A (2.3) BS01 DBH N/A GO:0003824 ... A0A5P1UDB1 39513969
    942632 9bhy:B (2.3) BS01 DBH N/A GO:0003824 ... A0A5P1UDB1 39513969
    942633 9bhz:A (2.22) BS01 KT0 N/A GO:0003824 ... A0A5P1UDB1 39513969
    942634 9bhz:B (2.22) BS01 KT0 N/A GO:0003824 ... A0A5P1UDB1 39513969
    942635 9bi0:A (2.93) BS01 CA N/A GO:0003700 ... Q54255 39521781
    942636 9bi1:A (1.65) BS01 GNP N/A GO:0003924 ... P01116 39476862
    942637 9bi1:A (1.65) BS02 MG N/A GO:0003924 ... P01116 39476862
    942638 9bi1:A (1.65) BS03 ZNI N/A GO:0003924 ... P01116 39476862
    942639 9bi1:B (1.65) BS01 ZNI N/A GO:0000413 ... P62937 39476862
    942640 9bi1:C (1.65) BS01 ZNI N/A GO:0003924 ... P01116 39476862
    942641 9bi1:C (1.65) BS02 GNP N/A GO:0003924 ... P01116 39476862
    942642 9bi1:C (1.65) BS03 MG N/A GO:0003924 ... P01116 39476862
    942643 9bi1:D (1.65) BS01 ZNI N/A GO:0000413 ... P62937 39476862
    942644 9bi2:A (2.15) BS01 GNP N/A GO:0003924 ... P01116 39476862
    942645 9bi2:A (2.15) BS02 MG N/A GO:0003924 ... P01116 39476862
    942646 9bi2:A (2.15) BS03 ZNI N/A GO:0003924 ... P01116 39476862
    942647 9bi2:B (2.15) BS01 ZNI N/A GO:0000413 ... P62937 39476862
    942648 9bi2:C (2.15) BS01 ZNI N/A GO:0003924 ... P01116 39476862
    942649 9bi2:C (2.15) BS02 GNP N/A GO:0003924 ... P01116 39476862
    942650 9bi2:C (2.15) BS03 MG N/A GO:0003924 ... P01116 39476862
    942651 9bi2:D (2.15) BS01 ZNI N/A GO:0000413 ... P62937 39476862
    942652 9bi4:A (3.2) BS01 MN N/A GO:0000014 ... P32829 39711558
    942653 9bi4:A (3.2) BS02 MN N/A GO:0000014 ... P32829 39711558
    942654 9bi4:B (3.2) BS01 MN N/A GO:0000014 ... P32829 39711558
    942655 9bi4:B (3.2) BS02 MN N/A GO:0000014 ... P32829 39711558
    942656 9bi4:C (3.2) BS01 dna N/A GO:0000722 ... P12753 39711558
    942657 9bi4:C (3.2) BS02 dna N/A GO:0000722 ... P12753 39711558
    942658 9bi4:C (3.2) BS03 ATP N/A GO:0000722 ... P12753 39711558
    942659 9bi4:C (3.2) BS04 MG N/A GO:0000722 ... P12753 39711558
    942660 9bi4:C (3.2) BS05 ATP N/A GO:0000722 ... P12753 39711558
    942661 9bi4:D (3.2) BS01 dna N/A GO:0000722 ... P12753 39711558
    942662 9bi4:D (3.2) BS02 dna N/A GO:0000722 ... P12753 39711558
    942663 9bi4:D (3.2) BS03 ATP N/A GO:0000722 ... P12753 39711558
    942664 9bi4:D (3.2) BS04 ATP N/A GO:0000722 ... P12753 39711558
    942665 9bi5:A (3.5) BS01 MN N/A GO:0000014 ... P32829 40796731
    942666 9bi5:A (3.5) BS02 MN N/A GO:0000014 ... P32829 40796731
    942667 9bi5:B (3.5) BS01 MN N/A GO:0000014 ... P32829 40796731
    942668 9bi5:B (3.5) BS02 MN N/A GO:0000014 ... P32829 40796731
    942669 9bi5:C (3.5) BS01 ATP N/A GO:0000722 ... P12753 40796731
    942670 9bi5:C (3.5) BS02 ATP N/A GO:0000722 ... P12753 40796731
    942671 9bi5:D (3.5) BS01 ATP N/A GO:0000722 ... P12753 40796731
    942672 9bi5:D (3.5) BS02 ATP N/A GO:0000722 ... P12753 40796731
    942673 9bi6:B (2.9) BS01 peptide N/A GO:0001750 ... P62873 39753132
    942674 9bi6:R (2.9) BS01 Y01 N/A GO:0004930 ... Q15743 39753132
    942675 9bi7:A (1.5) BS01 CA N/A N/A A0A0W8AWE3 N/A
    942676 9bi8:A (2.25) BS01 A1APL N/A GO:0004672 ... Q92918 39291002
    942677 9bi8:B (2.25) BS01 A1APL N/A GO:0004672 ... Q92918 39291002
    942678 9bib:A (3.81) BS01 GLY N/A GO:0005216 ... P35439 39085540
    942679 9bib:B (3.81) BS01 GLU N/A GO:0005216 ... G3V746 39085540
    942680 9bib:C (3.81) BS01 GLY N/A GO:0005216 ... P35439 39085540
    942681 9bib:D (3.81) BS01 GLU N/A GO:0005216 ... G3V746 39085540
    942682 9bie:A (3.4) BS01 peptide N/A N/A Q9C0D3 N/A
    942683 9big:A (3.304) BS01 A1AQQ N/A GO:0003677 ... P42226 39311434
    942684 9bih:A (3.24) BS01 rna N/A N/A P0DTD1 39755678
    942685 9bih:A (3.24) BS02 rna N/A N/A P0DTD1 39755678
    942686 9bih:C (3.24) BS01 rna N/A N/A P0DTD1 39755678
    942687 9bii:A (2.7) BS01 A1H2V N/A GO:0005506 ... P9WJY5 40169593
    942688 9bii:A (2.7) BS02 A1H2V N/A GO:0005506 ... P9WJY5 40169593
    942689 9bii:A (2.7) BS03 A1H2V N/A GO:0005506 ... P9WJY5 40169593
    942690 9bii:A (2.7) BS04 Y01 N/A GO:0005506 ... P9WJY5 40169593
    942691 9bii:B (2.7) BS01 A1H2V N/A GO:0005506 ... P9WJY5 40169593
    942692 9bii:B (2.7) BS02 A1H2V N/A GO:0005506 ... P9WJY5 40169593
    942693 9bii:B (2.7) BS03 A1H2V N/A GO:0005506 ... P9WJY5 40169593
    942694 9bii:B (2.7) BS04 Y01 N/A GO:0005506 ... P9WJY5 40169593
    942695 9bii:B (2.7) BS05 Y01 N/A GO:0005506 ... P9WJY5 40169593
    942696 9bik:A (2.25) BS01 A1APO N/A GO:0004672 ... Q92918 39291002
    942697 9bik:B (2.25) BS01 A1APO N/A GO:0004672 ... Q92918 39291002
    942698 9bim:A (3.67) BS01 HC6 N/A GO:0005307 ... Q9GZV3 39587078
    942699 9bin:A (3.45) BS01 A1AQR N/A GO:0005506 ... P9WJY5 40169593
    942700 9bin:A (3.45) BS02 A1H2V N/A GO:0005506 ... P9WJY5 40169593
    942701 9bin:A (3.45) BS03 Y01 N/A GO:0005506 ... P9WJY5 40169593
    942702 9bin:B (3.45) BS01 A1AQR N/A GO:0005506 ... P9WJY5 40169593
    942703 9bin:B (3.45) BS02 A1H2V N/A GO:0005506 ... P9WJY5 40169593
    942704 9bin:B (3.45) BS03 Y01 N/A GO:0005506 ... P9WJY5 40169593
    942705 9bio:C (2.83) BS01 MAN N/A GO:0019031 ... Q1M0K6 39675002
    942706 9bio:E (2.83) BS01 MAN N/A N/A N/A 39675002
    942707 9bio:G (2.83) BS01 MAN N/A GO:0019031 ... Q1M0K6 39675002
    942708 9bio:H (2.83) BS01 MAN N/A N/A N/A 39675002
    942709 9bio:H (2.83) BS02 MAN N/A N/A N/A 39675002
    942710 9bio:H (2.83) BS03 MAN N/A N/A N/A 39675002
    942711 9bio:I (2.83) BS01 MAN N/A N/A N/A 39675002
    942712 9bio:I (2.83) BS02 MAN N/A N/A N/A 39675002
    942713 9bio:K (2.83) BS01 MAN N/A GO:0019031 ... Q1M0K6 39675002
    942714 9bio:N (2.83) BS01 MAN N/A N/A N/A 39675002
    942715 9bio:P (2.83) BS01 MAN N/A N/A N/A 39675002
    942716 9bio:P (2.83) BS02 MAN N/A N/A N/A 39675002
    942717 9bio:U (2.83) BS01 MAN N/A N/A N/A 39675002
    942718 9biq:A (3.0) BS01 A1APN N/A GO:0005506 ... P9WJY5 40169593
    942719 9biq:A (3.0) BS02 A1H2V N/A GO:0005506 ... P9WJY5 40169593
    942720 9biq:A (3.0) BS03 A1H2V N/A GO:0005506 ... P9WJY5 40169593
    942721 9biq:A (3.0) BS04 Y01 N/A GO:0005506 ... P9WJY5 40169593
    942722 9biq:A (3.0) BS05 Y01 N/A GO:0005506 ... P9WJY5 40169593
    942723 9biq:A (3.0) BS06 A1H2V N/A GO:0005506 ... P9WJY5 40169593
    942724 9biq:B (3.0) BS01 Y01 N/A GO:0005506 ... P9WJY5 40169593
    942725 9biq:B (3.0) BS02 A1APN N/A GO:0005506 ... P9WJY5 40169593
    942726 9biq:B (3.0) BS03 A1H2V N/A GO:0005506 ... P9WJY5 40169593
    942727 9biq:B (3.0) BS04 A1H2V N/A GO:0005506 ... P9WJY5 40169593
    942728 9biq:B (3.0) BS05 A1H2V N/A GO:0005506 ... P9WJY5 40169593
    942729 9bir:A (3.1) BS01 A1APP N/A GO:0005886 ... Q63424 39384780
    942730 9bis:A (3.2) BS01 AXL N/A GO:0005886 ... Q63424 39384780
    942731 9bit:A (3.1) BS01 CXN N/A GO:0005886 ... Q63424 39384780
    942732 9biu:A (2.9) BS01 CXN N/A GO:0005886 ... Q63424 39384780
    942733 9biw:A (2.496) BS01 CA N/A GO:0005615 ... N/A N/A
    942734 9biw:A (2.496) BS02 CA N/A GO:0005615 ... N/A N/A
    942735 9biw:A (2.496) BS03 CA N/A GO:0005615 ... N/A N/A
    942736 9biw:A (2.496) BS04 CA N/A GO:0005615 ... N/A N/A
    942737 9biw:B (2.496) BS01 CA N/A GO:0005615 ... N/A N/A
    942738 9bj1:A (2.18) BS01 A1APR N/A GO:0004672 ... Q92918 39291002
    942739 9bj1:B (2.18) BS01 A1APQ N/A GO:0004672 ... Q92918 39291002
    942740 9bj8:R (3.78) BS01 ZN N/A N/A P62877 N/A
    942741 9bj8:R (3.78) BS02 ZN N/A N/A P62877 N/A
    942742 9bj8:R (3.78) BS03 ZN N/A N/A P62877 N/A
    942743 9bj9:A (4.2) BS01 peptide N/A N/A Q9C0D3 N/A
    942744 9bj9:R (4.2) BS01 ZN N/A N/A P62877 N/A
    942745 9bj9:R (4.2) BS02 ZN N/A N/A P62877 N/A
    942746 9bj9:R (4.2) BS03 ZN N/A N/A P62877 N/A
    942747 9bja:A (2.1) BS01 IHP N/A N/A P18177 39254660
    942748 9bja:B (2.1) BS01 IHP N/A N/A P18177 39254660
    942749 9bjc:A (2.22) BS01 A1AQZ N/A GO:0000082 ... P24941 N/A
    942750 9bji:A (2.83) BS01 peptide N/A GO:0000176 ... O15381 N/A
    942751 9bji:A (2.83) BS02 ATP N/A GO:0000176 ... O15381 N/A
    942752 9bji:A (2.83) BS03 ATP N/A GO:0000176 ... O15381 N/A
    942753 9bji:A (2.83) BS04 MG N/A GO:0000176 ... O15381 N/A
    942754 9bji:B (2.83) BS01 peptide N/A GO:0000176 ... O15381 N/A
    942755 9bji:B (2.83) BS02 ATP N/A GO:0000176 ... O15381 N/A
    942756 9bji:B (2.83) BS03 ATP N/A GO:0000176 ... O15381 N/A
    942757 9bji:B (2.83) BS04 ATP N/A GO:0000176 ... O15381 N/A
    942758 9bji:B (2.83) BS05 ATP N/A GO:0000176 ... O15381 N/A
    942759 9bji:C (2.83) BS01 peptide N/A GO:0000176 ... O15381 N/A
    942760 9bji:C (2.83) BS02 ATP N/A GO:0000176 ... O15381 N/A
    942761 9bji:C (2.83) BS03 ATP N/A GO:0000176 ... O15381 N/A
    942762 9bji:C (2.83) BS04 ATP N/A GO:0000176 ... O15381 N/A
    942763 9bji:C (2.83) BS05 ATP N/A GO:0000176 ... O15381 N/A
    942764 9bji:D (2.83) BS01 peptide N/A GO:0000176 ... O15381 N/A
    942765 9bji:D (2.83) BS02 ATP N/A GO:0000176 ... O15381 N/A
    942766 9bji:D (2.83) BS03 ATP N/A GO:0000176 ... O15381 N/A
    942767 9bji:D (2.83) BS04 ATP N/A GO:0000176 ... O15381 N/A
    942768 9bji:D (2.83) BS05 ATP N/A GO:0000176 ... O15381 N/A
    942769 9bji:E (2.83) BS01 peptide N/A GO:0000176 ... O15381 N/A
    942770 9bji:E (2.83) BS02 ATP N/A GO:0000176 ... O15381 N/A
    942771 9bji:E (2.83) BS03 ATP N/A GO:0000176 ... O15381 N/A
    942772 9bji:E (2.83) BS04 ATP N/A GO:0000176 ... O15381 N/A
    942773 9bjj:A (3.06) BS01 peptide N/A GO:0000176 ... O15381 N/A
    942774 9bjj:A (3.06) BS02 ATP N/A GO:0000176 ... O15381 N/A
    942775 9bjj:A (3.06) BS03 ATP N/A GO:0000176 ... O15381 N/A
    942776 9bjj:A (3.06) BS04 MG N/A GO:0000176 ... O15381 N/A
    942777 9bjj:B (3.06) BS01 peptide N/A GO:0000176 ... O15381 N/A
    942778 9bjj:B (3.06) BS02 ATP N/A GO:0000176 ... O15381 N/A
    942779 9bjj:B (3.06) BS03 ATP N/A GO:0000176 ... O15381 N/A
    942780 9bjj:B (3.06) BS04 ATP N/A GO:0000176 ... O15381 N/A
    942781 9bjj:B (3.06) BS05 ATP N/A GO:0000176 ... O15381 N/A
    942782 9bjj:B (3.06) BS06 MG N/A GO:0000176 ... O15381 N/A
    942783 9bjj:C (3.06) BS01 peptide N/A GO:0000176 ... O15381 N/A
    942784 9bjj:C (3.06) BS02 ATP N/A GO:0000176 ... O15381 N/A
    942785 9bjj:C (3.06) BS03 ATP N/A GO:0000176 ... O15381 N/A
    942786 9bjj:C (3.06) BS04 ATP N/A GO:0000176 ... O15381 N/A
    942787 9bjj:C (3.06) BS05 ATP N/A GO:0000176 ... O15381 N/A
    942788 9bjj:D (3.06) BS01 peptide N/A GO:0000176 ... O15381 N/A
    942789 9bjj:D (3.06) BS02 ATP N/A GO:0000176 ... O15381 N/A
    942790 9bjj:D (3.06) BS03 ATP N/A GO:0000176 ... O15381 N/A
    942791 9bjj:D (3.06) BS04 ATP N/A GO:0000176 ... O15381 N/A
    942792 9bjj:D (3.06) BS05 ATP N/A GO:0000176 ... O15381 N/A
    942793 9bjj:E (3.06) BS01 peptide N/A GO:0000176 ... O15381 N/A
    942794 9bjj:E (3.06) BS02 ATP N/A GO:0000176 ... O15381 N/A
    942795 9bjj:E (3.06) BS03 ATP N/A GO:0000176 ... O15381 N/A
    942796 9bjj:E (3.06) BS04 A1AP0 N/A GO:0000176 ... O15381 N/A
    942797 9bjj:E (3.06) BS05 ATP N/A GO:0000176 ... O15381 N/A
    942798 9bjj:F (3.06) BS01 A1AP0 N/A GO:0000176 ... O15381 N/A
    942799 9bjk:R (3.26) BS01 A1APV N/A GO:0001965 ... P42866 38961287
    942800 9bjk:R (3.26) BS02 A1APU N/A GO:0001965 ... P42866 38961287

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).