SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    942801 9bjm:A (2.07) BS01 A1APZ N/A GO:0019064 ... M1E1E4
    W8RJF9
    38932487
    942802 9bjq:A (1.8) BS01 CU N/A GO:0005576 ... G2Q7A5 39793048
    942803 9bjq:B (1.8) BS01 CU N/A GO:0005576 ... G2Q7A5 39793048
    942804 9bjr:A (2.2) BS01 CU N/A GO:0005576 ... G2Q7A5 39793048
    942805 9bjr:B (2.2) BS01 CU N/A GO:0005576 ... G2Q7A5 39793048
    942806 9bjr:B (2.2) BS02 OXY N/A GO:0005576 ... G2Q7A5 39793048
    942807 9bjs:A (2.0) BS01 CU N/A GO:0005576 ... G2Q7A5 39793048
    942808 9bjs:A (2.0) BS02 OXY N/A GO:0005576 ... G2Q7A5 39793048
    942809 9bjs:B (2.0) BS01 CU N/A GO:0005576 ... G2Q7A5 39793048
    942810 9bjt:A (3.0) BS01 CU N/A GO:0005576 ... G2Q7A5 39793048
    942811 9bjt:B (3.0) BS01 CU N/A GO:0005576 ... G2Q7A5 39793048
    942812 9bju:C (2.47) BS01 peptide ? N/A P40337 38809766
    942813 9bju:F (2.47) BS01 peptide ? N/A P40337 38809766
    942814 9bju:I (2.47) BS01 peptide ? N/A P40337 38809766
    942815 9bju:K (2.47) BS01 TFA ? GO:0006511 ... Q15369 38809766
    942816 9bju:L (2.47) BS01 peptide ? N/A P40337 38809766
    942817 9bjy:A (1.58) BS01 TMO N/A N/A Q9HUA0 N/A
    942818 9bk2:A (1.85) BS01 A1AQ0 N/A GO:0003824 ... P00338 38925013
    942819 9bk2:D (1.85) BS01 A1AQ0 N/A GO:0003824 ... P00338 38925013
    942820 9bk3:D (2.4) BS01 A1AR0 N/A GO:0003824 ... P00338 38925013
    942821 9bk4:A (2.08) BS01 PYR N/A N/A A0A069Q0R8 N/A
    942822 9bk4:B (2.08) BS01 PYR N/A N/A A0A069Q0R8 N/A
    942823 9bk8:A (1.67) BS01 2KT N/A N/A A0A069Q0R8 N/A
    942824 9bkd:B (2.6) BS01 rna N/A GO:0002181 ... P62280 39117603
    942825 9bkd:C (2.6) BS01 rna N/A GO:0002181 ... P62701 39117603
    942826 9bkd:D (2.6) BS01 rna N/A GO:0002181 ... P46781 39117603
    942827 9bkd:E (2.6) BS01 rna N/A GO:0002181 ... P62266 39117603
    942828 9bkd:F (2.6) BS01 rna N/A GO:0003735 ... P62861 39117603
    942829 9bkd:G (2.6) BS01 rna N/A GO:0002181 ... P62081 39117603
    942830 9bkd:H (2.6) BS01 rna N/A GO:0002181 ... P42677 39117603
    942831 9bkd:I (2.6) BS01 rna N/A GO:0000462 ... P62277 39117603
    942832 9bkd:J (2.6) BS01 rna N/A GO:0002181 ... P62244 39117603
    942833 9bkd:L (2.6) BS01 rna N/A GO:0002181 ... P15880 39117603
    942834 9bkd:M (2.6) BS01 rna N/A GO:0002181 ... P08708 39117603
    942835 9bkd:N (2.6) BS01 rna N/A GO:0000028 ... P08865 39117603
    942836 9bkd:O (2.6) BS01 rna N/A GO:0002181 ... P61247 39117603
    942837 9bkd:P (2.6) BS01 rna N/A GO:0000028 ... P62263 39117603
    942838 9bkd:Q (2.6) BS01 rna N/A GO:0002181 ... P62854 39117603
    942839 9bkd:Q (2.6) BS02 ZN N/A GO:0002181 ... P62854 39117603
    942840 9bkd:R (2.6) BS01 rna N/A GO:0002181 ... P62241 39117603
    942841 9bkd:S (2.6) BS01 rna N/A GO:0002181 ... P62753 39117603
    942842 9bkd:T (2.6) BS01 rna N/A GO:0002181 ... P62847 39117603
    942843 9bkd:U (2.6) BS01 rna N/A GO:0005515 ... Q53EL6 39117603
    942844 9bkd:V (2.6) BS01 rna N/A GO:0002181 ... P46782 39117603
    942845 9bkd:Y (2.6) BS01 rna N/A GO:0000462 ... P62249 39117603
    942846 9bkd:Z (2.6) BS01 rna N/A GO:0001228 ... P23396 39117603
    942847 9bkd:a (2.6) BS01 rna N/A GO:0002181 ... P46783 39117603
    942848 9bkd:b (2.6) BS01 rna N/A GO:0000056 ... P62841 39117603
    942849 9bkd:c (2.6) BS01 rna N/A GO:0001891 ... P63244 39117603
    942850 9bkd:d (2.6) BS01 rna N/A GO:0000028 ... P39019 39117603
    942851 9bkd:e (2.6) BS01 rna N/A GO:0002181 ... P62851 39117603
    942852 9bkd:f (2.6) BS01 rna N/A GO:0002181 ... P62269 39117603
    942853 9bkd:f (2.6) BS02 MG N/A GO:0002181 ... P62269 39117603
    942854 9bkd:h (2.6) BS01 rna N/A GO:0002181 ... P60866 39117603
    942855 9bkd:i (2.6) BS01 rna N/A GO:0002181 ... P62273 39117603
    942856 9bkd:i (2.6) BS02 ZN N/A GO:0002181 ... P62273 39117603
    942857 9bkd:k (2.6) BS01 rna N/A GO:0002181 ... P62979 39117603
    942858 9bkd:k (2.6) BS02 ZN N/A GO:0002181 ... P62979 39117603
    942859 9bkd:m (2.6) BS01 rna N/A GO:0002181 ... P25398 39117603
    942860 9bkd:n (2.6) BS01 rna N/A GO:0000028 ... P62857 39117603
    942861 9bkj:R (2.59) BS01 peptide ? GO:0004930 ... P32238 39083706
    942862 9bkk:R (2.51) BS01 peptide ? GO:0004930 ... P32238 39083706
    942863 9bkl:A (1.7) BS01 CO ? GO:0005506 ... P24297 N/A
    942864 9bkm:A (2.08) BS01 FMN N/A GO:0004152 ... Q02127 38889244
    942865 9bkm:A (2.08) BS02 A1AQM N/A GO:0004152 ... Q02127 38889244
    942866 9bkn:A (1.3) BS01 FMN N/A GO:0004152 ... Q02127 38889244
    942867 9bkn:A (1.3) BS02 A1AQK N/A GO:0004152 ... Q02127 38889244
    942868 9bko:A (1.44) BS01 FMN N/A GO:0004152 ... Q02127 38889244
    942869 9bko:A (1.44) BS02 A1AQL N/A GO:0004152 ... Q02127 38889244
    942870 9bkp:A (1.8) BS01 FE ? GO:0005506 ... P24297 N/A
    942871 9bkq:A (2.1) BS01 A1AQN N/A N/A A0A068EGP0 39197447
    942872 9bkq:D (2.1) BS01 A1AQN N/A N/A A0A068EGP0 39197447
    942873 9bkr:A (1.4) BS01 ATP N/A GO:0006511 ... Q14669 N/A
    942874 9bks:A (1.17) BS01 ADP N/A GO:0006511 ... Q14669 N/A
    942875 9bkt:A (1.8) BS01 FE2 ? GO:0005506 ... P24297 N/A
    942876 9bku:A (3.39) BS01 6OU N/A GO:0005216 ... Q8NET8 40348873
    942877 9bku:A (3.39) BS02 6OU N/A GO:0005216 ... Q8NET8 40348873
    942878 9bku:A (3.39) BS03 6OU N/A GO:0005216 ... Q8NET8 40348873
    942879 9bku:A (3.39) BS04 6OU N/A GO:0005216 ... Q8NET8 40348873
    942880 9bku:A (3.39) BS05 6OU N/A GO:0005216 ... Q8NET8 40348873
    942881 9bku:A (3.39) BS06 6OU N/A GO:0005216 ... Q8NET8 40348873
    942882 9bku:A (3.39) BS07 6OU N/A GO:0005216 ... Q8NET8 40348873
    942883 9bku:B (3.39) BS01 6OU N/A GO:0005216 ... Q8NET8 40348873
    942884 9bku:B (3.39) BS02 6OU N/A GO:0005216 ... Q8NET8 40348873
    942885 9bku:B (3.39) BS03 6OU N/A GO:0005216 ... Q8NET8 40348873
    942886 9bku:B (3.39) BS04 6OU N/A GO:0005216 ... Q8NET8 40348873
    942887 9bku:B (3.39) BS05 6OU N/A GO:0005216 ... Q8NET8 40348873
    942888 9bku:B (3.39) BS06 6OU N/A GO:0005216 ... Q8NET8 40348873
    942889 9bku:B (3.39) BS07 6OU N/A GO:0005216 ... Q8NET8 40348873
    942890 9bku:C (3.39) BS01 6OU N/A GO:0005216 ... Q8NET8 40348873
    942891 9bku:C (3.39) BS02 6OU N/A GO:0005216 ... Q8NET8 40348873
    942892 9bku:C (3.39) BS03 6OU N/A GO:0005216 ... Q8NET8 40348873
    942893 9bku:C (3.39) BS04 6OU N/A GO:0005216 ... Q8NET8 40348873
    942894 9bku:C (3.39) BS05 6OU N/A GO:0005216 ... Q8NET8 40348873
    942895 9bku:C (3.39) BS06 6OU N/A GO:0005216 ... Q8NET8 40348873
    942896 9bku:C (3.39) BS07 6OU N/A GO:0005216 ... Q8NET8 40348873
    942897 9bku:D (3.39) BS01 6OU N/A GO:0005216 ... Q8NET8 40348873
    942898 9bku:D (3.39) BS02 6OU N/A GO:0005216 ... Q8NET8 40348873
    942899 9bku:D (3.39) BS03 6OU N/A GO:0005216 ... Q8NET8 40348873
    942900 9bku:D (3.39) BS04 6OU N/A GO:0005216 ... Q8NET8 40348873
    942901 9bku:D (3.39) BS05 6OU N/A GO:0005216 ... Q8NET8 40348873
    942902 9bku:D (3.39) BS06 6OU N/A GO:0005216 ... Q8NET8 40348873
    942903 9bku:D (3.39) BS07 6OU N/A GO:0005216 ... Q8NET8 40348873
    942904 9bkv:A (3.43) BS01 HEM N/A GO:0000287 ... P76129 39511182
    942905 9bkv:B (3.43) BS01 HEM N/A GO:0000287 ... P76129 39511182
    942906 9bkx:D (3.15) BS01 peptide N/A GO:0005576 ... I6WZG6 39770668
    942907 9bkx:G (3.15) BS01 peptide N/A GO:0005576 ... I6WZG6 39770668
    942908 9bkx:H (3.15) BS01 peptide N/A GO:0005576 ... I6WZG6 39770668
    942909 9bkx:I (3.15) BS01 peptide N/A GO:0005576 ... I6WZG6 39770668
    942910 9bkx:P (3.15) BS01 peptide N/A GO:0005576 ... I6WZG6 39770668
    942911 9bkx:Q (3.15) BS01 peptide N/A GO:0005576 ... I6WZG6 39770668
    942912 9bkx:R (3.15) BS01 peptide N/A GO:0005576 ... I6WZG6 39770668
    942913 9bkx:S (3.15) BS01 peptide N/A GO:0005576 ... I6WZG6 39770668
    942914 9bkx:T (3.15) BS01 peptide N/A GO:0005576 ... I6WZG6 39770668
    942915 9bkz:A (2.35) BS01 ADP 2.7.1.24 GO:0004140 ... A0A0H3FR62 N/A
    942916 9bkz:A (2.35) BS02 COA 2.7.1.24 GO:0004140 ... A0A0H3FR62 N/A
    942917 9bkz:B (2.35) BS01 COA 2.7.1.24 GO:0004140 ... A0A0H3FR62 N/A
    942918 9bkz:B (2.35) BS02 ADP 2.7.1.24 GO:0004140 ... A0A0H3FR62 N/A
    942919 9bl0:A (1.66) BS01 GDP N/A GO:0003924 ... P01116 N/A
    942920 9bl0:A (1.66) BS02 6IC N/A GO:0003924 ... P01116 N/A
    942921 9bl0:B (1.66) BS01 GDP N/A GO:0003924 ... P01116 N/A
    942922 9bl0:B (1.66) BS02 6IC N/A GO:0003924 ... P01116 N/A
    942923 9bl2:A (2.1) BS01 peptide N/A N/A I3ZN84 39476840
    942924 9bl3:A (2.0) BS01 peptide N/A N/A I3ZN84 39476840
    942925 9bl3:G (2.0) BS01 peptide N/A N/A P43629 39476840
    942926 9bl4:A (1.75) BS01 peptide N/A N/A I3ZN84 39476840
    942927 9bl4:G (1.75) BS01 peptide N/A N/A P43629 39476840
    942928 9bl5:A (2.0) BS01 peptide N/A N/A A0A411J078 39476840
    942929 9bl5:G (2.0) BS01 peptide N/A N/A P43629 39476840
    942930 9bl6:A (2.4) BS01 peptide N/A N/A A0A411J078 39476840
    942931 9bl6:G (2.4) BS01 peptide N/A N/A P43629 39476840
    942932 9bl7:A (3.22) BS01 A1ATG N/A GO:0005506 ... P9WJY5 40169593
    942933 9bl7:A (3.22) BS02 A1ATG N/A GO:0005506 ... P9WJY5 40169593
    942934 9bl7:A (3.22) BS03 A1ATG N/A GO:0005506 ... P9WJY5 40169593
    942935 9bl7:B (3.22) BS01 A1ATG N/A GO:0005506 ... P9WJY5 40169593
    942936 9bl7:B (3.22) BS02 A1ATG N/A GO:0005506 ... P9WJY5 40169593
    942937 9bl7:B (3.22) BS03 A1ATG N/A GO:0005506 ... P9WJY5 40169593
    942938 9bl9:A (2.6) BS01 peptide N/A N/A A0A411J078 39476840
    942939 9bla:A (3.0) BS01 peptide N/A N/A A0A411J078 39476840
    942940 9blf:A (3.31) BS01 rna N/A GO:0003723 ... P0DTD1 N/A
    942941 9blf:A (3.31) BS02 rna N/A GO:0003723 ... P0DTD1 N/A
    942942 9blf:A (3.31) BS03 ZN N/A GO:0003723 ... P0DTD1 N/A
    942943 9blf:A (3.31) BS04 MG N/A GO:0003723 ... P0DTD1 N/A
    942944 9blf:A (3.31) BS05 HF4 N/A GO:0003723 ... P0DTD1 N/A
    942945 9blf:A (3.31) BS06 MG N/A GO:0003723 ... P0DTD1 N/A
    942946 9blf:A (3.31) BS07 HF4 N/A GO:0003723 ... P0DTD1 N/A
    942947 9blf:B (3.31) BS01 rna N/A GO:0004197 ... P0DTD1 N/A
    942948 9blf:B (3.31) BS02 rna N/A GO:0004197 ... P0DTD1 N/A
    942949 9blf:D (3.31) BS01 rna N/A GO:0004197 ... P0DTD1 N/A
    942950 9blg:A (2.06) BS01 A1AQ1 3.1.3.48 GO:0004725 ... Q06124 37269335
    942951 9blg:B (2.06) BS01 A1AQ1 3.1.3.48 GO:0004725 ... Q06124 37269335
    942952 9blh:A (2.35) BS01 6ZZ N/A GO:0004672 ... Q13557 41484366
    942953 9blh:B (2.35) BS01 6ZZ N/A GO:0004672 ... Q13557 41484366
    942954 9bli:B (2.0) BS01 peptide N/A GO:0003779 ... P14315 41484366
    942955 9bln:B (3.9) BS01 rna N/A GO:0002181 ... P62280 39117603
    942956 9bln:C (3.9) BS01 rna N/A GO:0002181 ... P62701 39117603
    942957 9bln:D (3.9) BS01 rna N/A GO:0002181 ... P46781 39117603
    942958 9bln:E (3.9) BS01 rna N/A GO:0002181 ... P62266 39117603
    942959 9bln:F (3.9) BS01 rna N/A GO:0003735 ... P62861 39117603
    942960 9bln:G (3.9) BS01 rna N/A GO:0002181 ... P62081 39117603
    942961 9bln:H (3.9) BS01 rna N/A GO:0002181 ... P42677 39117603
    942962 9bln:I (3.9) BS01 rna N/A GO:0000462 ... P62277 39117603
    942963 9bln:J (3.9) BS01 rna N/A GO:0002181 ... P62244 39117603
    942964 9bln:L (3.9) BS01 rna N/A GO:0002181 ... P15880 39117603
    942965 9bln:M (3.9) BS01 rna N/A GO:0002181 ... P08708 39117603
    942966 9bln:N (3.9) BS01 rna N/A GO:0000028 ... P08865 39117603
    942967 9bln:O (3.9) BS01 rna N/A GO:0002181 ... P61247 39117603
    942968 9bln:P (3.9) BS01 rna N/A GO:0000028 ... P62263 39117603
    942969 9bln:Q (3.9) BS01 rna N/A GO:0002181 ... P62854 39117603
    942970 9bln:Q (3.9) BS02 ZN N/A GO:0002181 ... P62854 39117603
    942971 9bln:R (3.9) BS01 rna N/A GO:0002181 ... P62241 39117603
    942972 9bln:S (3.9) BS01 rna N/A GO:0002181 ... P62753 39117603
    942973 9bln:T (3.9) BS01 rna N/A GO:0002181 ... P62847 39117603
    942974 9bln:V (3.9) BS01 rna N/A GO:0002181 ... P46782 39117603
    942975 9bln:W (3.9) BS01 rna N/A GO:0003723 ... P41567 39117603
    942976 9bln:Y (3.9) BS01 rna N/A GO:0000462 ... P62249 39117603
    942977 9bln:Z (3.9) BS01 rna N/A GO:0001228 ... P23396 39117603
    942978 9bln:a (3.9) BS01 rna N/A GO:0002181 ... P46783 39117603
    942979 9bln:b (3.9) BS01 rna N/A GO:0000056 ... P62841 39117603
    942980 9bln:c (3.9) BS01 rna N/A GO:0001891 ... P63244 39117603
    942981 9bln:d (3.9) BS01 rna N/A GO:0000028 ... P39019 39117603
    942982 9bln:e (3.9) BS01 rna N/A GO:0002181 ... P62851 39117603
    942983 9bln:f (3.9) BS01 rna N/A GO:0002181 ... P62269 39117603
    942984 9bln:h (3.9) BS01 rna N/A GO:0002181 ... P60866 39117603
    942985 9bln:i (3.9) BS01 rna N/A GO:0002181 ... P62273 39117603
    942986 9bln:i (3.9) BS02 ZN N/A GO:0002181 ... P62273 39117603
    942987 9bln:k (3.9) BS01 rna N/A GO:0002181 ... P62979 39117603
    942988 9bln:k (3.9) BS02 ZN N/A GO:0002181 ... P62979 39117603
    942989 9bln:m (3.9) BS01 rna N/A GO:0002181 ... P25398 39117603
    942990 9bln:n (3.9) BS01 rna N/A GO:0000028 ... P62857 39117603
    942991 9bln:p (3.9) BS01 rna N/A GO:0005515 ... Q53EL6 39117603
    942992 9bln:x (3.9) BS01 rna N/A GO:0001732 ... O15371 39117603
    942993 9blo:A (1.35) BS01 MG N/A N/A N/A 40713781
    942994 9blo:A (1.35) BS02 CA N/A N/A N/A 40713781
    942995 9blo:B (1.35) BS01 MG N/A N/A N/A 40713781
    942996 9blo:B (1.35) BS02 CA N/A N/A N/A 40713781
    942997 9blp:A (1.2) BS01 CA N/A N/A N/A 40713781
    942998 9blp:A (1.2) BS02 CA N/A N/A N/A 40713781
    942999 9blq:A (2.75) BS01 FE N/A GO:0005506 ... C1IC31 N/A
    943000 9blq:B (2.75) BS01 FE N/A GO:0005506 ... C1IC31 N/A

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).