SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    94201 2k4w:A (-1.00) BS02 ZN 1.15.1.1 GO:0004784 ... Q704S6 19006322
    94202 2k4x:A (-1.00) BS01 ZN ? GO:0003735 ... Q9HJ78 N/A
    94203 2k5c:A (-1.00) BS01 ZN ? N/A Q8U3S0 N/A
    94204 2k5t:A (-1.00) BS01 COA ? GO:0005515 ... P37613 N/A
    94205 2k5u:A (-1.00) BS01 GDP 3.6.5.2 GO:0003924 ... P11076 19141284
    94206 2k60:A (-1.00) BS01 CA ? GO:0005246 ... Q13586 18854159
    94207 2k61:A (-1.00) BS01 CA ? GO:0000922 ... P0DP23 19317469
    94208 2k61:A (-1.00) BS02 CA ? GO:0000922 ... P0DP23 19317469
    94209 2k61:A (-1.00) BS03 CA ? GO:0000922 ... P0DP23 19317469
    94210 2k62:A (-1.00) BS01 ITL ? GO:0005504 ... P80226 18939814
    94211 2k6q:A (-1.00) BS01 peptide ? N/A Q62625 N/A
    94212 2k6t:B (-1.00) BS01 peptide ? N/A P51460 19086273
    94213 2k6z:A (-1.00) BS01 CU1 ? N/A Q5SGY7 18758441
    94214 2k70:A (-1.00) BS01 CU1 ? N/A Q5SGY7 18758441
    94215 2k74:A (-1.00) BS01 UQ2 ? GO:0005515 ... P0A6M2 18922471
    94216 2k78:A (-1.00) BS01 ZNH ? GO:0009274 ... Q7A151 18715872
    94217 2k7b:A (-1.00) BS01 MG ? GO:0005509 ... Q9NZU7 N/A
    94218 2k7d:A (-1.00) BS01 CA ? GO:0005509 ... Q9NZU7 N/A
    94219 2k7d:A (-1.00) BS02 CA ? GO:0005509 ... Q9NZU7 N/A
    94220 2k7f:A (-1.00) BS01 dna ? N/A P35251 20081198
    94221 2k7f:A (-1.00) BS02 dna ? N/A P35251 20081198
    94222 2k7l:A (-1.00) BS01 peptide ? GO:0003677 ... P35269 19215094
    94223 2k7o:A (-1.00) BS01 CA ? GO:0001726 ... P04631 18949447
    94224 2k7o:A (-1.00) BS02 CA ? GO:0001726 ... P04631 18949447
    94225 2k7o:B (-1.00) BS01 CA ? GO:0001726 ... P04631 18949447
    94226 2k7o:B (-1.00) BS02 CA ? GO:0001726 ... P04631 18949447
    94227 2k7r:A (-1.00) BS01 ZN ? N/A P06567 19255093
    94228 2k7w:A (-1.00) BS01 peptide ? GO:0001783 ... Q07812 18948948
    94229 2k8d:A (-1.00) BS01 ZN 1.8.4.12 GO:0005737 ... O26807 21219456
    94230 2k8r:A (-1.00) BS01 IHP ? GO:0008083 ... P05230 N/A
    94231 2k91:B (-1.00) BS01 peptide ? GO:0005179 ... P01308 19321436
    94232 2k9c:A (-1.00) BS01 CO 3.4.24.65 GO:0004222 ... P39900 18988744
    94233 2k9h:A (-1.00) BS01 ZN ? N/A Q9E006 19179334
    94234 2k9h:A (-1.00) BS02 ZN ? N/A Q9E006 19179334
    94235 2k9r:B (-1.00) BS01 peptide ? GO:0005179 ... P01308 19321436
    94236 2k9u:A (-1.00) BS01 peptide ? GO:0030036 ... Q14315 19074766
    94237 2ka4:A (-1.00) BS01 ZN 2.3.1.-
    2.3.1.48
    GO:0004402 ... P45481 19214187
    94238 2ka4:A (-1.00) BS02 ZN 2.3.1.-
    2.3.1.48
    GO:0004402 ... P45481 19214187
    94239 2ka4:A (-1.00) BS03 ZN 2.3.1.-
    2.3.1.48
    GO:0004402 ... P45481 19214187
    94240 2ka6:A (-1.00) BS01 ZN 2.3.1.-
    2.3.1.48
    GO:0004402 ... P45481 19214187
    94241 2ka6:A (-1.00) BS02 ZN 2.3.1.-
    2.3.1.48
    GO:0004402 ... P45481 19214187
    94242 2ka6:A (-1.00) BS03 ZN 2.3.1.-
    2.3.1.48
    GO:0004402 ... P45481 19214187
    94243 2ka9:A (-1.00) BS01 peptide ? N/A P31016 19072119
    94244 2ka9:A (-1.00) BS02 peptide ? N/A P31016 19072119
    94245 2kae:A (-1.00) BS01 dna N/A GO:0006355 ... N/A 19095651
    94246 2kae:A (-1.00) BS02 dna N/A GO:0006355 ... N/A 19095651
    94247 2kae:A (-1.00) BS03 ZN N/A GO:0006355 ... N/A 19095651
    94248 2kaj:A (-1.00) BS01 GA ? GO:0005515 ... P27320 20690702
    94249 2kak:A (-1.00) BS01 ZN ? GO:0008270 ... P30569 19361445
    94250 2kak:A (-1.00) BS02 ZN ? GO:0008270 ... P30569 19361445
    94251 2kak:A (-1.00) BS03 ZN ? GO:0008270 ... P30569 19361445
    94252 2kak:A (-1.00) BS04 ZN ? GO:0008270 ... P30569 19361445
    94253 2kau:C (2.0) BS01 NI 3.5.1.5 GO:0005515 ... P18314 7754395
    94254 2kau:C (2.0) BS02 NI 3.5.1.5 GO:0005515 ... P18314 7754395
    94255 2kaw:A (-1.00) BS01 SUZ ? GO:0016055 ... P51141 19637179
    94256 2kay:A (-1.00) BS01 CA ? GO:0005507 ... P33763 19536568
    94257 2kay:A (-1.00) BS02 CA ? GO:0005507 ... P33763 19536568
    94258 2kay:B (-1.00) BS01 CA ? GO:0005507 ... P33763 19536568
    94259 2kay:B (-1.00) BS02 CA ? GO:0005507 ... P33763 19536568
    94260 2kb2:A (-1.00) BS01 FMN ? GO:0009882 ... A6T8V8 19191473
    94261 2kbm:A (-1.00) BS01 peptide ? GO:0000122 ... P35467 N/A
    94262 2kbm:A (-1.00) BS02 CA ? GO:0000122 ... P35467 N/A
    94263 2kbm:A (-1.00) BS03 CA ? GO:0000122 ... P35467 N/A
    94264 2kbm:B (-1.00) BS01 peptide ? GO:0000122 ... P35467 N/A
    94265 2kbm:B (-1.00) BS02 CA ? GO:0000122 ... P35467 N/A
    94266 2kbm:B (-1.00) BS03 CA ? GO:0000122 ... P35467 N/A
    94267 2kbo:A (-1.00) BS01 ZN 3.5.4.38 GO:0008270 ... Q9HC16 19153609
    94268 2kbr:A (-1.00) BS01 peptide ? N/A Q9Y6N9 19297620
    94269 2kbs:A (-1.00) BS01 peptide ? N/A Q9Y6N9 19297620
    94270 2kbx:B (-1.00) BS01 ZN ? N/A P48059 N/A
    94271 2kbx:B (-1.00) BS02 ZN ? N/A P48059 N/A
    94272 2kce:A (2.2) BS01 UMP 2.1.1.45 GO:0000287 ... P0A884 8939755
    94273 2kce:A (2.2) BS02 D16 2.1.1.45 GO:0000287 ... P0A884 8939755 MOAD: Ki=0.67uM
    BindingDB: IC50=2300nM
    94274 2kce:A (2.2) BS03 UMP 2.1.1.45 GO:0000287 ... P0A884 8939755
    94275 2kce:B (2.2) BS01 UMP 2.1.1.45 GO:0000287 ... P0A884 8939755
    94276 2kce:B (2.2) BS02 UMP 2.1.1.45 GO:0000287 ... P0A884 8939755
    94277 2kce:B (2.2) BS03 D16 2.1.1.45 GO:0000287 ... P0A884 8939755 MOAD: Ki=0.67uM
    BindingDB: IC50=2300nM
    94278 2kdh:A (-1.00) BS01 CA ? GO:0005509 ... P63316 19542563
    94279 2kdh:A (-1.00) BS02 KDH ? GO:0005509 ... P63316 19542563
    94280 2kdh:A (-1.00) BS03 CA ? GO:0005509 ... P63316 19542563
    94281 2kdp:A (-1.00) BS01 ZN ? N/A O75446 19223330
    94282 2kdu:A (-1.00) BS01 CA ? GO:0005102 ... P0DP33 20010694
    94283 2kdu:A (-1.00) BS02 CA ? GO:0005102 ... P0DP33 20010694
    94284 2kdu:A (-1.00) BS03 CA ? GO:0005102 ... P0DP33 20010694
    94285 2kdu:A (-1.00) BS04 CA ? GO:0005102 ... P0DP33 20010694
    94286 2kdx:A (-1.00) BS01 ZN ? GO:0008270 ... P0A0U4 19621959
    94287 2kdz:A (-1.00) BS01 dna ? N/A Q58HP2 19246540
    94288 2kdz:A (-1.00) BS02 dna ? N/A Q58HP2 19246540
    94289 2ke1:A (-1.00) BS01 peptide ? N/A O43918 19293276
    94290 2ke1:A (-1.00) BS02 ZN ? N/A O43918 19293276
    94291 2ke1:A (-1.00) BS03 ZN ? N/A O43918 19293276
    94292 2ke5:A (-1.00) BS01 GNP 3.6.5.2 GO:0003924 ... P11234 19166349
    94293 2kei:A (-1.00) BS01 dna ? GO:0003677 ... P03023 19450607
    94294 2kei:A (-1.00) BS02 dna ? GO:0003677 ... P03023 19450607
    94295 2kei:B (-1.00) BS01 dna ? GO:0003677 ... P03023 19450607
    94296 2kei:B (-1.00) BS02 dna ? GO:0003677 ... P03023 19450607
    94297 2kej:A (-1.00) BS01 dna ? GO:0003677 ... P03023 19450607
    94298 2kej:A (-1.00) BS02 dna ? GO:0003677 ... P03023 19450607
    94299 2kej:B (-1.00) BS01 dna ? GO:0003677 ... P03023 19450607
    94300 2kej:B (-1.00) BS02 dna ? GO:0003677 ... P03023 19450607
    94301 2kek:A (-1.00) BS01 dna ? GO:0003677 ... P03023 19450607
    94302 2kek:A (-1.00) BS02 dna ? GO:0003677 ... P03023 19450607
    94303 2kek:B (-1.00) BS01 dna ? GO:0003677 ... P03023 19450607
    94304 2kek:B (-1.00) BS02 dna ? GO:0003677 ... P03023 19450607
    94305 2kem:A (-1.00) BS01 ZN 3.5.4.38 GO:0008270 ... Q9HC16 19389408
    94306 2kff:A (-1.00) BS01 peptide ? GO:0005509 ... Q9H4M9 19798736
    94307 2kff:A (-1.00) BS02 CA ? GO:0005509 ... Q9H4M9 19798736
    94308 2kfg:A (-1.00) BS01 peptide ? GO:0005509 ... Q9H4M9 19798736
    94309 2kfg:A (-1.00) BS02 CA ? GO:0005509 ... Q9H4M9 19798736
    94310 2kfh:A (-1.00) BS01 peptide ? GO:0005509 ... Q9H4M9 19798736
    94311 2kfh:A (-1.00) BS02 CA ? GO:0005509 ... Q9H4M9 19798736
    94312 2kfn:A (2.03) BS01 dna 2.7.7.7 GO:0003676 ... P00582 9888810
    94313 2kfn:A (2.03) BS02 ZN 2.7.7.7 GO:0003676 ... P00582 9888810
    94314 2kfn:A (2.03) BS03 ZN 2.7.7.7 GO:0003676 ... P00582 9888810
    94315 2kfn:A (2.03) BS04 ZN 2.7.7.7 GO:0003676 ... P00582 9888810
    94316 2kfn:A (2.03) BS05 MG 2.7.7.7 GO:0003676 ... P00582 9888810
    94317 2kft:A (-1.00) BS01 peptide ? N/A O43918 19446523
    94318 2kft:A (-1.00) BS02 ZN ? N/A O43918 19446523
    94319 2kft:A (-1.00) BS03 ZN ? N/A O43918 19446523
    94320 2kfx:T (-1.00) BS01 CA ? GO:0005509 ... P63316 19419198
    94321 2kfx:T (-1.00) BS02 WW7 ? GO:0005509 ... P63316 19419198
    94322 2kfy:A (-1.00) BS01 rna ? GO:0003676 ... P52597 20526337
    94323 2kfz:A (2.03) BS01 dna 2.7.7.7 GO:0003676 ... P00582 9888810
    94324 2kfz:A (2.03) BS02 ZN 2.7.7.7 GO:0003676 ... P00582 9888810
    94325 2kfz:A (2.03) BS03 ZN 2.7.7.7 GO:0003676 ... P00582 9888810
    94326 2kfz:A (2.03) BS04 ZN 2.7.7.7 GO:0003676 ... P00582 9888810
    94327 2kfz:A (2.03) BS05 MG 2.7.7.7 GO:0003676 ... P00582 9888810
    94328 2kg0:A (-1.00) BS01 rna ? GO:0003676 ... P52597 20526337
    94329 2kg1:A (-1.00) BS01 rna ? GO:0003676 ... P52597 20526337
    94330 2kg6:A (-1.00) BS01 SXA ? GO:0000035 ... Q02054 19361520
    94331 2kg8:A (-1.00) BS01 SXM ? GO:0000035 ... Q02054 19361520
    94332 2kg9:A (-1.00) BS01 PSR ? GO:0000035 ... Q02054 19361520
    94333 2kga:A (-1.00) BS01 SXH ? GO:0000035 ... Q02054 19361520
    94334 2kgb:C (-1.00) BS01 peptide ? GO:0005509 ... P63316 19472326
    94335 2kgb:C (-1.00) BS02 CA ? GO:0005509 ... P63316 19472326
    94336 2kgc:A (-1.00) BS01 SXO ? GO:0000035 ... Q02054 19361520
    94337 2kgd:A (-1.00) BS01 SXV ? GO:0000035 ... Q02054 19361520
    94338 2kge:A (-1.00) BS01 SXD ? GO:0000035 ... Q02054 19361520
    94339 2kgg:A (-1.00) BS01 ZN 1.14.11.67 N/A P29375 19430464
    94340 2kgg:A (-1.00) BS02 ZN 1.14.11.67 N/A P29375 19430464
    94341 2kgi:A (-1.00) BS01 peptide 1.14.11.67 N/A P29375 19430464
    94342 2kgi:A (-1.00) BS02 ZN 1.14.11.67 N/A P29375 19430464
    94343 2kgi:A (-1.00) BS03 ZN 1.14.11.67 N/A P29375 19430464
    94344 2kgk:A (-1.00) BS01 NAP 1.5.1.3 GO:0004146 ... Q81R22 19323450
    94345 2kgk:A (-1.00) BS02 N22 1.5.1.3 GO:0004146 ... Q81R22 19323450 BindingDB: IC50=890nM, Ki=300nM
    94346 2kgo:A (-1.00) BS01 ZN ? GO:0008270 ... P41039 N/A
    94347 2kh9:A (-1.00) BS01 rna ? GO:0003676 ... P49960 20181740
    94348 2khh:A (-1.00) BS01 peptide ? GO:0005634 ... Q99257 19401465
    94349 2ki5:A (1.9) BS01 AC2 2.7.1.21 GO:0000166 ... P0DTH5 9989588
    94350 2ki5:B (1.9) BS01 AC2 2.7.1.21 GO:0000166 ... P0DTH5 9989588
    94351 2ki7:B (-1.00) BS01 ZN 3.1.26.5 GO:0001682 ... Q8U0H6 19733182
    94352 2kid:A (-1.00) BS01 peptide ? N/A Q9S446 19592495
    94353 2kid:A (-1.00) BS02 CA ? N/A Q9S446 19592495
    94354 2kii:A (-1.00) BS01 HEM ? GO:0020037 ... Q8EF49 19918063
    94355 2kik:A (-1.00) BS01 ZN N/A N/A N/A N/A
    94356 2kik:B (-1.00) BS01 ZN N/A N/A N/A N/A
    94357 2kik:B (-1.00) BS02 ZN N/A N/A N/A N/A
    94358 2kil:A (-1.00) BS01 HEM ? GO:0020037 ... Q8EF49 19918063
    94359 2kin:A (2.0) BS01 ADP 3.6.4.- GO:0003777 ... P56536 9405049
    94360 2kiz:A (-1.00) BS01 ZN 2.3.2.27 GO:0061630 ... Q6ZNA4 22411132
    94361 2kiz:A (-1.00) BS02 ZN 2.3.2.27 GO:0061630 ... Q6ZNA4 22411132
    94362 2kje:A (-1.00) BS01 ZN 2.3.1.-
    2.3.1.48
    GO:0004402 ... Q92793 19651603
    94363 2kje:A (-1.00) BS02 ZN 2.3.1.-
    2.3.1.48
    GO:0004402 ... Q92793 19651603
    94364 2kje:A (-1.00) BS03 ZN 2.3.1.-
    2.3.1.48
    GO:0004402 ... Q92793 19651603
    94365 2kjj:B (-1.00) BS01 peptide ? GO:0005179 ... P01308 N/A
    94366 2kju:B (-1.00) BS01 peptide ? GO:0005179 ... P01308 N/A
    94367 2kkd:A (-1.00) BS01 NI ? GO:0005506 ... P00269 19997764
    94368 2kkf:A (-1.00) BS01 dna 2.1.1.-
    2.1.1.364
    GO:0003677 ... Q03164 20010842
    94369 2kkf:A (-1.00) BS02 dna 2.1.1.-
    2.1.1.364
    GO:0003677 ... Q03164 20010842
    94370 2kkf:A (-1.00) BS03 ZN 2.1.1.-
    2.1.1.364
    GO:0003677 ... Q03164 20010842
    94371 2kkf:A (-1.00) BS04 ZN 2.1.1.-
    2.1.1.364
    GO:0003677 ... Q03164 20010842
    94372 2kkh:A (-1.00) BS01 ZN 7.2.2.12
    7.2.2.21
    GO:0046872 ... O64474 19883117
    94373 2kkr:A (-1.00) BS01 ZN ? N/A O15265 N/A
    94374 2kkt:A (-1.00) BS01 ZN ? N/A Q14CW9 N/A
    94375 2klh:A (-1.00) BS01 5GP 3.2.2.- GO:0009159 ... O35820 19822152
    94376 2klh:A (-1.00) BS02 5GP 3.2.2.- GO:0009159 ... O35820 19822152
    94377 2klh:B (-1.00) BS01 5GP 3.2.2.- GO:0009159 ... O35820 19822152
    94378 2klh:B (-1.00) BS02 5GP 3.2.2.- GO:0009159 ... O35820 19822152
    94379 2km0:A (-1.00) BS01 CU1 ? GO:0042597 ... Q58AD3 20192263
    94380 2km8:B (-1.00) BS01 rna ? GO:0003676 ... P25299 20600122
    94381 2km8:C (-1.00) BS01 rna ? GO:0003676 ... Q99383 20600122
    94382 2kmb:1 (2.0) BS01 MAG ? N/A P19999 9033386
    94383 2kmb:1 (2.0) BS02 FUC ? N/A P19999 9033386
    94384 2kmb:1 (2.0) BS03 CA ? N/A P19999 9033386
    94385 2kmb:1 (2.0) BS04 CA ? N/A P19999 9033386
    94386 2kmb:1 (2.0) BS05 CA ? N/A P19999 9033386
    94387 2kmb:2 (2.0) BS01 MAG ? N/A P19999 9033386
    94388 2kmb:2 (2.0) BS02 FUC ? N/A P19999 9033386
    94389 2kmb:2 (2.0) BS03 CA ? N/A P19999 9033386
    94390 2kmb:2 (2.0) BS04 CA ? N/A P19999 9033386
    94391 2kmb:2 (2.0) BS05 CA ? N/A P19999 9033386
    94392 2kmb:3 (2.0) BS01 FUC ? N/A P19999 9033386
    94393 2kmb:3 (2.0) BS02 CA ? N/A P19999 9033386
    94394 2kmb:3 (2.0) BS03 CA ? N/A P19999 9033386
    94395 2kmb:3 (2.0) BS04 CA ? N/A P19999 9033386
    94396 2kmk:A (-1.00) BS01 dna ? N/A Q07120 20153336
    94397 2kmk:A (-1.00) BS02 dna ? N/A Q07120 20153336
    94398 2kmk:A (-1.00) BS03 ZN ? N/A Q07120 20153336
    94399 2kmk:A (-1.00) BS04 ZN ? N/A Q07120 20153336
    94400 2kmk:A (-1.00) BS05 ZN ? N/A Q07120 20153336

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).