SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    944001 9bup:A7 (2.7) BS01 rna N/A GO:0002181 ... Q8I463 40825879
    944002 9bup:A8 (2.7) BS01 rna N/A GO:0003735 ... Q8I3B0 40825879
    944003 9bup:A9 (2.7) BS01 rna N/A GO:0002181 ... Q8IHT9 40825879
    944004 9bup:AD (2.7) BS01 rna N/A GO:0002181 ... Q8I3T9 40825879
    944005 9bup:AD (2.7) BS02 rna N/A GO:0002181 ... Q8I3T9 40825879
    944006 9bup:AE (2.7) BS01 rna N/A GO:0003723 ... Q8IJC6 40825879
    944007 9bup:AF (2.7) BS01 rna N/A GO:0003723 ... Q8I431 40825879
    944008 9bup:AF (2.7) BS02 rna N/A GO:0003723 ... Q8I431 40825879
    944009 9bup:AG (2.7) BS01 rna N/A GO:0003723 ... Q8IBQ6 40825879
    944010 9bup:AG (2.7) BS02 rna N/A GO:0003723 ... Q8IBQ6 40825879
    944011 9bup:AH (2.7) BS01 rna N/A GO:0002181 ... Q8IE85 40825879
    944012 9bup:AI (2.7) BS01 rna N/A GO:0002181 ... A0A5K1K8V8 40825879
    944013 9bup:AJ (2.7) BS01 rna N/A GO:0000470 ... Q8ILL2 40825879
    944014 9bup:AK (2.7) BS01 rna N/A GO:0003729 ... Q8IJZ7 40825879
    944015 9bup:AL (2.7) BS01 rna N/A GO:0003723 ... Q8IAX6 40825879
    944016 9bup:AL (2.7) BS02 rna N/A GO:0003723 ... Q8IAX6 40825879
    944017 9bup:AM (2.7) BS01 rna N/A GO:0003735 ... Q8IE09 40825879
    944018 9bup:AN (2.7) BS01 rna N/A GO:0003723 ... Q8ILE8 40825879
    944019 9bup:AO (2.7) BS01 rna N/A GO:0003735 ... C6KT23 40825879
    944020 9bup:AP (2.7) BS01 rna N/A GO:0002181 ... C0H4A6 40825879
    944021 9bup:AP (2.7) BS02 rna N/A GO:0002181 ... C0H4A6 40825879
    944022 9bup:AQ (2.7) BS01 rna N/A GO:0003735 ... Q8ILV2 40825879
    944023 9bup:AQ (2.7) BS02 rna N/A GO:0003735 ... Q8ILV2 40825879
    944024 9bup:AQ (2.7) BS03 rna N/A GO:0003735 ... Q8ILV2 40825879
    944025 9bup:AR (2.7) BS01 rna N/A GO:0000027 ... Q8ILL3 40825879
    944026 9bup:AR (2.7) BS02 rna N/A GO:0000027 ... Q8ILL3 40825879
    944027 9bup:AS (2.7) BS01 rna N/A GO:0002181 ... C0H5G3 40825879
    944028 9bup:AT (2.7) BS01 rna N/A GO:0003723 ... C6KSY6 40825879
    944029 9bup:AT (2.7) BS02 rna N/A GO:0003723 ... C6KSY6 40825879
    944030 9bup:AU (2.7) BS01 rna N/A GO:0002181 ... Q8IDS6 40825879
    944031 9bup:AU (2.7) BS02 rna N/A GO:0002181 ... Q8IDS6 40825879
    944032 9bup:AV (2.7) BS01 rna N/A GO:0003735 ... Q8ILK3 40825879
    944033 9bup:AW (2.7) BS01 rna N/A GO:0003735 ... Q8IDI5 40825879
    944034 9bup:AW (2.7) BS02 rna N/A GO:0003735 ... Q8IDI5 40825879
    944035 9bup:AX (2.7) BS01 rna N/A GO:0002181 ... Q8IB51 40825879
    944036 9bup:AY (2.7) BS01 rna N/A GO:0003735 ... Q8IE82 40825879
    944037 9bup:AY (2.7) BS02 rna N/A GO:0003735 ... Q8IE82 40825879
    944038 9bup:AZ (2.7) BS01 rna N/A GO:0002181 ... O77364 40825879
    944039 9bup:AZ (2.7) BS02 rna N/A GO:0002181 ... O77364 40825879
    944040 9bup:Aa (2.7) BS01 rna N/A GO:0003735 ... Q8IBY4 40825879
    944041 9bup:Ab (2.7) BS01 rna N/A GO:0002181 ... Q8I713 40825879
    944042 9bup:Ac (2.7) BS01 rna N/A GO:0000448 ... C0H4L5 40825879
    944043 9bup:Ac (2.7) BS02 rna N/A GO:0000448 ... C0H4L5 40825879
    944044 9bup:Ad (2.7) BS01 rna N/A GO:0002181 ... Q8II62 40825879
    944045 9bup:Ae (2.7) BS01 rna N/A GO:0002181 ... C0H4H3 40825879
    944046 9bup:Ae (2.7) BS02 rna N/A GO:0002181 ... C0H4H3 40825879
    944047 9bup:Af (2.7) BS01 rna N/A GO:0003729 ... Q8ID50 40825879
    944048 9bup:Ag (2.7) BS01 rna N/A GO:0003735 ... C6S3G4 40825879
    944049 9bup:Ag (2.7) BS02 rna N/A GO:0003735 ... C6S3G4 40825879
    944050 9bup:Ah (2.7) BS01 rna N/A GO:0003735 ... O96184 40825879
    944051 9bup:Ai (2.7) BS01 rna N/A GO:0002181 ... O97231 40825879
    944052 9bup:Ai (2.7) BS02 rna N/A GO:0002181 ... O97231 40825879
    944053 9bup:S1 (2.7) BS01 rna N/A GO:0002181 ... Q8I3R6 40825879
    944054 9bup:S2 (2.7) BS01 rna N/A GO:0003735 ... Q8ILN8 40825879
    944055 9bup:S3 (2.7) BS01 rna N/A GO:0003729 ... O96258 40825879
    944056 9bup:S4 (2.7) BS01 rna N/A GO:0003735 ... Q8IEN2 40825879
    944057 9bup:S5 (2.7) BS01 rna N/A GO:0000028 ... Q8IKL9 40825879
    944058 9bup:S6 (2.7) BS01 rna N/A GO:0003735 ... O96269 40825879
    944059 9bup:SB (2.7) BS01 rna N/A GO:0003735 ... O97313 40825879
    944060 9bup:SB (2.7) BS02 rna N/A GO:0003735 ... O97313 40825879
    944061 9bup:SC (2.7) BS01 rna N/A GO:0000028 ... Q8IJD4 40825879
    944062 9bup:SD (2.7) BS01 rna N/A GO:0003723 ... Q8IKH8 40825879
    944063 9bup:SE (2.7) BS01 rna N/A GO:0003723 ... Q8I3R0 40825879
    944064 9bup:SF (2.7) BS01 rna N/A GO:0003723 ... Q8IIU8 40825879
    944065 9bup:SG (2.7) BS01 rna N/A GO:0003723 ... Q8IL02 40825879
    944066 9bup:SH (2.7) BS01 rna N/A GO:0003735 ... Q8IDR9 40825879
    944067 9bup:SI (2.7) BS01 rna N/A GO:0003723 ... Q8IBN5 40825879
    944068 9bup:SJ (2.7) BS01 rna N/A GO:0003735 ... Q8IET7 40825879
    944069 9bup:SK (2.7) BS01 rna N/A GO:0003735 ... O77395 40825879
    944070 9bup:SL (2.7) BS01 rna N/A GO:0002181 ... Q8IM10 40825879
    944071 9bup:SL (2.7) BS02 rna N/A GO:0002181 ... Q8IM10 40825879
    944072 9bup:SM (2.7) BS01 rna N/A GO:0000462 ... Q8IAX5 40825879
    944073 9bup:SN (2.7) BS01 rna N/A GO:0003735 ... Q8IK02 40825879
    944074 9bup:SO (2.7) BS01 rna N/A GO:0003723 ... Q8IBQ5 40825879
    944075 9bup:SP (2.7) BS01 rna N/A GO:0000028 ... A0A5K1K925 40825879
    944076 9bup:SQ (2.7) BS01 rna N/A GO:0003735 ... O97248 40825879
    944077 9bup:SS (2.7) BS01 rna N/A GO:0003676 ... Q8IIA2 40825879
    944078 9bup:ST (2.7) BS01 rna N/A GO:0002181 ... C0H4K8 40825879
    944079 9bup:SU (2.7) BS01 rna N/A GO:0000462 ... Q8IDB0 40825879
    944080 9bup:SV (2.7) BS01 rna N/A GO:0003735 ... O77381 40825879
    944081 9bup:SW (2.7) BS01 rna N/A GO:0003735 ... Q8I502 40825879
    944082 9bup:SX (2.7) BS01 rna N/A GO:0003723 ... C0H5C2 40825879
    944083 9bup:SY (2.7) BS01 rna N/A GO:0003735 ... Q8IFP2 40825879
    944084 9bup:SZ (2.7) BS01 rna N/A GO:0000447 ... Q8IHS5 40825879
    944085 9buq:A0 (2.3) BS01 rna N/A GO:0002181 ... Q8IEM3 40825879
    944086 9buq:A1 (2.3) BS01 rna N/A GO:0003735 ... Q8IKM5 40825879
    944087 9buq:A2 (2.3) BS01 rna N/A GO:0022625 ... Q8IHU0 40825879
    944088 9buq:A3 (2.3) BS01 rna N/A GO:0000463 ... Q8IIB4 40825879
    944089 9buq:A3 (2.3) BS02 rna N/A GO:0000463 ... Q8IIB4 40825879
    944090 9buq:A4 (2.3) BS01 rna N/A GO:0002181 ... C6S3J6 40825879
    944091 9buq:A5 (2.3) BS01 rna N/A GO:0000463 ... O97250 40825879
    944092 9buq:A5 (2.3) BS02 rna N/A GO:0000463 ... O97250 40825879
    944093 9buq:A6 (2.3) BS01 rna N/A GO:0003723 ... Q8IJK8 40825879
    944094 9buq:A7 (2.3) BS01 rna N/A GO:0002181 ... Q8I463 40825879
    944095 9buq:A8 (2.3) BS01 rna N/A GO:0003735 ... Q8I3B0 40825879
    944096 9buq:A9 (2.3) BS01 rna N/A GO:0002181 ... Q8IHT9 40825879
    944097 9buq:AD (2.3) BS01 rna N/A GO:0002181 ... Q8I3T9 40825879
    944098 9buq:AD (2.3) BS02 rna N/A GO:0002181 ... Q8I3T9 40825879
    944099 9buq:AE (2.3) BS01 rna N/A GO:0003723 ... Q8IJC6 40825879
    944100 9buq:AF (2.3) BS01 rna N/A GO:0003723 ... Q8I431 40825879
    944101 9buq:AF (2.3) BS02 rna N/A GO:0003723 ... Q8I431 40825879
    944102 9buq:AG (2.3) BS01 rna N/A GO:0003723 ... Q8IBQ6 40825879
    944103 9buq:AG (2.3) BS02 rna N/A GO:0003723 ... Q8IBQ6 40825879
    944104 9buq:AH (2.3) BS01 rna N/A GO:0002181 ... Q8IE85 40825879
    944105 9buq:AI (2.3) BS01 rna N/A GO:0002181 ... A0A5K1K8V8 40825879
    944106 9buq:AJ (2.3) BS01 rna N/A GO:0000470 ... Q8ILL2 40825879
    944107 9buq:AK (2.3) BS01 rna N/A GO:0003729 ... Q8IJZ7 40825879
    944108 9buq:AL (2.3) BS01 rna N/A GO:0003723 ... Q8IAX6 40825879
    944109 9buq:AL (2.3) BS02 rna N/A GO:0003723 ... Q8IAX6 40825879
    944110 9buq:AM (2.3) BS01 rna N/A GO:0003735 ... Q8IE09 40825879
    944111 9buq:AN (2.3) BS01 rna N/A GO:0003723 ... Q8ILE8 40825879
    944112 9buq:AO (2.3) BS01 rna N/A GO:0003735 ... C6KT23 40825879
    944113 9buq:AP (2.3) BS01 rna N/A GO:0002181 ... C0H4A6 40825879
    944114 9buq:AP (2.3) BS02 rna N/A GO:0002181 ... C0H4A6 40825879
    944115 9buq:AQ (2.3) BS01 rna N/A GO:0003735 ... Q8ILV2 40825879
    944116 9buq:AQ (2.3) BS02 rna N/A GO:0003735 ... Q8ILV2 40825879
    944117 9buq:AR (2.3) BS01 rna N/A GO:0000027 ... Q8ILL3 40825879
    944118 9buq:AR (2.3) BS02 rna N/A GO:0000027 ... Q8ILL3 40825879
    944119 9buq:AS (2.3) BS01 rna N/A GO:0002181 ... C0H5G3 40825879
    944120 9buq:AT (2.3) BS01 rna N/A GO:0003723 ... C6KSY6 40825879
    944121 9buq:AT (2.3) BS02 rna N/A GO:0003723 ... C6KSY6 40825879
    944122 9buq:AU (2.3) BS01 rna N/A GO:0002181 ... Q8IDS6 40825879
    944123 9buq:AU (2.3) BS02 rna N/A GO:0002181 ... Q8IDS6 40825879
    944124 9buq:AV (2.3) BS01 rna N/A GO:0003735 ... Q8ILK3 40825879
    944125 9buq:AW (2.3) BS01 rna N/A GO:0003735 ... Q8IDI5 40825879
    944126 9buq:AW (2.3) BS02 rna N/A GO:0003735 ... Q8IDI5 40825879
    944127 9buq:AX (2.3) BS01 rna N/A GO:0002181 ... Q8IB51 40825879
    944128 9buq:AY (2.3) BS01 rna N/A GO:0003735 ... Q8IE82 40825879
    944129 9buq:AY (2.3) BS02 rna N/A GO:0003735 ... Q8IE82 40825879
    944130 9buq:AZ (2.3) BS01 rna N/A GO:0002181 ... O77364 40825879
    944131 9buq:AZ (2.3) BS02 rna N/A GO:0002181 ... O77364 40825879
    944132 9buq:Aa (2.3) BS01 rna N/A GO:0003735 ... Q8IBY4 40825879
    944133 9buq:Ab (2.3) BS01 rna N/A GO:0002181 ... Q8I713 40825879
    944134 9buq:Ac (2.3) BS01 rna N/A GO:0000448 ... C0H4L5 40825879
    944135 9buq:Ac (2.3) BS02 rna N/A GO:0000448 ... C0H4L5 40825879
    944136 9buq:Ad (2.3) BS01 rna N/A GO:0002181 ... Q8II62 40825879
    944137 9buq:Ae (2.3) BS01 rna N/A GO:0002181 ... C0H4H3 40825879
    944138 9buq:Ae (2.3) BS02 rna N/A GO:0002181 ... C0H4H3 40825879
    944139 9buq:Af (2.3) BS01 rna N/A GO:0003729 ... Q8ID50 40825879
    944140 9buq:Ag (2.3) BS01 rna N/A GO:0003735 ... C6S3G4 40825879
    944141 9buq:Ag (2.3) BS02 rna N/A GO:0003735 ... C6S3G4 40825879
    944142 9buq:Ah (2.3) BS01 rna N/A GO:0003735 ... O96184 40825879
    944143 9buq:Ai (2.3) BS01 rna N/A GO:0002181 ... O97231 40825879
    944144 9buq:Ai (2.3) BS02 rna N/A GO:0002181 ... O97231 40825879
    944145 9buq:S1 (2.3) BS01 rna N/A GO:0002181 ... Q8I3R6 40825879
    944146 9buq:S2 (2.3) BS01 rna N/A GO:0003735 ... Q8ILN8 40825879
    944147 9buq:S3 (2.3) BS01 rna N/A GO:0003729 ... O96258 40825879
    944148 9buq:S4 (2.3) BS01 rna N/A GO:0003735 ... Q8IEN2 40825879
    944149 9buq:S5 (2.3) BS01 rna N/A GO:0000028 ... Q8IKL9 40825879
    944150 9buq:S6 (2.3) BS01 rna N/A GO:0003735 ... O96269 40825879
    944151 9buq:SB (2.3) BS01 rna N/A GO:0003735 ... O97313 40825879
    944152 9buq:SC (2.3) BS01 rna N/A GO:0000028 ... Q8IJD4 40825879
    944153 9buq:SD (2.3) BS01 rna N/A GO:0003723 ... Q8IKH8 40825879
    944154 9buq:SE (2.3) BS01 rna N/A GO:0003723 ... Q8I3R0 40825879
    944155 9buq:SF (2.3) BS01 rna N/A GO:0003723 ... Q8IIU8 40825879
    944156 9buq:SG (2.3) BS01 rna N/A GO:0003723 ... Q8IL02 40825879
    944157 9buq:SH (2.3) BS01 rna N/A GO:0003735 ... Q8IDR9 40825879
    944158 9buq:SI (2.3) BS01 rna N/A GO:0003723 ... Q8IBN5 40825879
    944159 9buq:SJ (2.3) BS01 rna N/A GO:0003735 ... Q8IET7 40825879
    944160 9buq:SK (2.3) BS01 rna N/A GO:0003735 ... O77395 40825879
    944161 9buq:SL (2.3) BS01 rna N/A GO:0002181 ... Q8IM10 40825879
    944162 9buq:SL (2.3) BS02 rna N/A GO:0002181 ... Q8IM10 40825879
    944163 9buq:SM (2.3) BS01 rna N/A GO:0000462 ... Q8IAX5 40825879
    944164 9buq:SN (2.3) BS01 rna N/A GO:0003735 ... Q8IK02 40825879
    944165 9buq:SO (2.3) BS01 rna N/A GO:0003723 ... Q8IBQ5 40825879
    944166 9buq:SP (2.3) BS01 rna N/A GO:0000028 ... A0A5K1K925 40825879
    944167 9buq:SQ (2.3) BS01 rna N/A GO:0003735 ... O97248 40825879
    944168 9buq:SS (2.3) BS01 rna N/A GO:0003676 ... Q8IIA2 40825879
    944169 9buq:ST (2.3) BS01 rna N/A GO:0002181 ... C0H4K8 40825879
    944170 9buq:SU (2.3) BS01 rna N/A GO:0000462 ... Q8IDB0 40825879
    944171 9buq:SU (2.3) BS02 rna N/A GO:0000462 ... Q8IDB0 40825879
    944172 9buq:SV (2.3) BS01 rna N/A GO:0003735 ... O77381 40825879
    944173 9buq:SW (2.3) BS01 rna N/A GO:0003735 ... Q8I502 40825879
    944174 9buq:SX (2.3) BS01 rna N/A GO:0003723 ... C0H5C2 40825879
    944175 9buq:SY (2.3) BS01 rna N/A GO:0003735 ... Q8IFP2 40825879
    944176 9buq:SZ (2.3) BS01 rna N/A GO:0000447 ... Q8IHS5 40825879
    944177 9bur:A (2.95) BS01 CLR N/A GO:0005788 ... P38435 39880952
    944178 9bus:A0 (2.4) BS01 rna N/A GO:0002181 ... Q8IEM3 40825879
    944179 9bus:A1 (2.4) BS01 rna N/A GO:0003735 ... Q8IKM5 40825879
    944180 9bus:A2 (2.4) BS01 rna N/A GO:0022625 ... Q8IHU0 40825879
    944181 9bus:A3 (2.4) BS01 rna N/A GO:0000463 ... Q8IIB4 40825879
    944182 9bus:A3 (2.4) BS02 rna N/A GO:0000463 ... Q8IIB4 40825879
    944183 9bus:A4 (2.4) BS01 rna N/A GO:0002181 ... C6S3J6 40825879
    944184 9bus:A5 (2.4) BS01 rna N/A GO:0000463 ... O97250 40825879
    944185 9bus:A5 (2.4) BS02 rna N/A GO:0000463 ... O97250 40825879
    944186 9bus:A6 (2.4) BS01 rna N/A GO:0003723 ... Q8IJK8 40825879
    944187 9bus:A7 (2.4) BS01 rna N/A GO:0002181 ... Q8I463 40825879
    944188 9bus:A8 (2.4) BS01 rna N/A GO:0003735 ... Q8I3B0 40825879
    944189 9bus:A9 (2.4) BS01 rna N/A GO:0002181 ... Q8IHT9 40825879
    944190 9bus:AD (2.4) BS01 rna N/A GO:0002181 ... Q8I3T9 40825879
    944191 9bus:AD (2.4) BS02 rna N/A GO:0002181 ... Q8I3T9 40825879
    944192 9bus:AE (2.4) BS01 rna N/A GO:0003723 ... Q8IJC6 40825879
    944193 9bus:AF (2.4) BS01 rna N/A GO:0003723 ... Q8I431 40825879
    944194 9bus:AF (2.4) BS02 rna N/A GO:0003723 ... Q8I431 40825879
    944195 9bus:AG (2.4) BS01 rna N/A GO:0003723 ... Q8IBQ6 40825879
    944196 9bus:AG (2.4) BS02 rna N/A GO:0003723 ... Q8IBQ6 40825879
    944197 9bus:AH (2.4) BS01 rna N/A GO:0002181 ... Q8IE85 40825879
    944198 9bus:AI (2.4) BS01 rna N/A GO:0002181 ... A0A5K1K8V8 40825879
    944199 9bus:AJ (2.4) BS01 rna N/A GO:0000470 ... Q8ILL2 40825879
    944200 9bus:AK (2.4) BS01 rna N/A GO:0003729 ... Q8IJZ7 40825879

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).