SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    947201 9ca8:G (3.92) BS01 ADP N/A GO:0000492 ... Q9Y265 N/A
    947202 9ca8:H (3.92) BS01 ADP N/A GO:0000492 ... Q9Y230 N/A
    947203 9ca8:I (3.92) BS01 ADP N/A GO:0000492 ... Q9Y265 N/A
    947204 9ca8:J (3.92) BS01 ADP N/A GO:0000492 ... Q9Y230 N/A
    947205 9ca8:Q (3.92) BS01 dna N/A GO:0000786 ... P06897 N/A
    947206 9ca8:Q (3.92) BS02 dna N/A GO:0000786 ... P06897 N/A
    947207 9ca8:R (3.92) BS01 dna N/A GO:0000786 ... P02281 N/A
    947208 9ca8:R (3.92) BS02 dna N/A GO:0000786 ... P02281 N/A
    947209 9ca8:S (3.92) BS01 dna N/A GO:0000786 ... P06897 N/A
    947210 9ca8:S (3.92) BS02 dna N/A GO:0000786 ... P06897 N/A
    947211 9ca8:T (3.92) BS01 dna N/A GO:0000786 ... P02281 N/A
    947212 9ca8:T (3.92) BS02 dna N/A GO:0000786 ... P02281 N/A
    947213 9ca8:U (3.92) BS01 dna N/A GO:0000786 ... P84233 N/A
    947214 9ca8:U (3.92) BS02 dna N/A GO:0000786 ... P84233 N/A
    947215 9ca8:V (3.92) BS01 dna N/A GO:0000786 ... P62799 N/A
    947216 9ca8:V (3.92) BS02 dna N/A GO:0000786 ... P62799 N/A
    947217 9ca8:W (3.92) BS01 dna N/A GO:0000786 ... P84233 N/A
    947218 9ca8:W (3.92) BS02 dna N/A GO:0000786 ... P84233 N/A
    947219 9ca8:X (3.92) BS01 dna N/A GO:0000786 ... P62799 N/A
    947220 9ca8:X (3.92) BS02 dna N/A GO:0000786 ... P62799 N/A
    947221 9ca9:C (3.56) BS01 AGS N/A GO:0000812 ... Q9GZN1 N/A
    947222 9ca9:D (3.56) BS01 ZN N/A GO:0000812 ... O43257 N/A
    947223 9ca9:D (3.56) BS02 ZN N/A GO:0000812 ... O43257 N/A
    947224 9ca9:E (3.56) BS01 ADP N/A GO:0000492 ... Q9Y265 N/A
    947225 9ca9:F (3.56) BS01 ADP N/A GO:0000492 ... Q9Y230 N/A
    947226 9ca9:G (3.56) BS01 ADP N/A GO:0000492 ... Q9Y265 N/A
    947227 9ca9:H (3.56) BS01 ADP N/A GO:0000492 ... Q9Y230 N/A
    947228 9ca9:I (3.56) BS01 ADP N/A GO:0000492 ... Q9Y265 N/A
    947229 9ca9:J (3.56) BS01 ADP N/A GO:0000492 ... Q9Y230 N/A
    947230 9caa:C (4.04) BS01 AGS N/A GO:0000812 ... Q9GZN1 N/A
    947231 9caa:D (4.04) BS01 ZN N/A GO:0000812 ... O43257 N/A
    947232 9caa:D (4.04) BS02 ZN N/A GO:0000812 ... O43257 N/A
    947233 9caa:E (4.04) BS01 ADP N/A GO:0000492 ... Q9Y265 N/A
    947234 9caa:F (4.04) BS01 ADP N/A GO:0000492 ... Q9Y230 N/A
    947235 9caa:G (4.04) BS01 ADP N/A GO:0000492 ... Q9Y265 N/A
    947236 9caa:H (4.04) BS01 ADP N/A GO:0000492 ... Q9Y230 N/A
    947237 9caa:I (4.04) BS01 ADP N/A GO:0000492 ... Q9Y265 N/A
    947238 9caa:J (4.04) BS01 ADP N/A GO:0000492 ... Q9Y230 N/A
    947239 9caa:Q (4.04) BS01 dna N/A GO:0000786 ... P06897 N/A
    947240 9caa:Q (4.04) BS02 dna N/A GO:0000786 ... P06897 N/A
    947241 9caa:R (4.04) BS01 dna N/A GO:0000786 ... P02281 N/A
    947242 9caa:R (4.04) BS02 dna N/A GO:0000786 ... P02281 N/A
    947243 9caa:S (4.04) BS01 dna N/A GO:0000786 ... P06897 N/A
    947244 9caa:S (4.04) BS02 dna N/A GO:0000786 ... P06897 N/A
    947245 9caa:T (4.04) BS01 dna N/A GO:0000786 ... P02281 N/A
    947246 9caa:T (4.04) BS02 dna N/A GO:0000786 ... P02281 N/A
    947247 9caa:U (4.04) BS01 dna N/A GO:0000786 ... P84233 N/A
    947248 9caa:U (4.04) BS02 dna N/A GO:0000786 ... P84233 N/A
    947249 9caa:V (4.04) BS01 dna N/A GO:0000786 ... P62799 N/A
    947250 9caa:V (4.04) BS02 dna N/A GO:0000786 ... P62799 N/A
    947251 9caa:W (4.04) BS01 dna N/A GO:0000786 ... P84233 N/A
    947252 9caa:W (4.04) BS02 dna N/A GO:0000786 ... P84233 N/A
    947253 9caa:X (4.04) BS01 dna N/A GO:0000786 ... P62799 N/A
    947254 9caa:X (4.04) BS02 dna N/A GO:0000786 ... P62799 N/A
    947255 9cab:A (3.94) BS01 dna N/A GO:0000785 ... Q6ZRS2 N/A
    947256 9cab:A (3.94) BS02 dna N/A GO:0000785 ... Q6ZRS2 N/A
    947257 9cab:A (3.94) BS03 AGS N/A GO:0000785 ... Q6ZRS2 N/A
    947258 9cab:C (3.94) BS01 AGS N/A GO:0000812 ... Q9GZN1 N/A
    947259 9cab:D (3.94) BS01 ZN N/A GO:0000812 ... O43257 N/A
    947260 9cab:D (3.94) BS02 ZN N/A GO:0000812 ... O43257 N/A
    947261 9cab:E (3.94) BS01 ADP N/A GO:0000492 ... Q9Y265 N/A
    947262 9cab:F (3.94) BS01 ADP N/A GO:0000492 ... Q9Y230 N/A
    947263 9cab:G (3.94) BS01 ADP N/A GO:0000492 ... Q9Y265 N/A
    947264 9cab:H (3.94) BS01 ADP N/A GO:0000492 ... Q9Y230 N/A
    947265 9cab:I (3.94) BS01 ADP N/A GO:0000492 ... Q9Y265 N/A
    947266 9cab:J (3.94) BS01 ADP N/A GO:0000492 ... Q9Y230 N/A
    947267 9cab:Q (3.94) BS01 dna N/A GO:0000786 ... P06897 N/A
    947268 9cab:Q (3.94) BS02 dna N/A GO:0000786 ... P06897 N/A
    947269 9cab:R (3.94) BS01 dna N/A GO:0000786 ... P02281 N/A
    947270 9cab:R (3.94) BS02 dna N/A GO:0000786 ... P02281 N/A
    947271 9cab:S (3.94) BS01 dna N/A GO:0000786 ... P06897 N/A
    947272 9cab:S (3.94) BS02 dna N/A GO:0000786 ... P06897 N/A
    947273 9cab:T (3.94) BS01 dna N/A GO:0000786 ... P02281 N/A
    947274 9cab:T (3.94) BS02 dna N/A GO:0000786 ... P02281 N/A
    947275 9cab:U (3.94) BS01 dna N/A GO:0000786 ... P84233 N/A
    947276 9cab:U (3.94) BS02 dna N/A GO:0000786 ... P84233 N/A
    947277 9cab:V (3.94) BS01 dna N/A GO:0000786 ... P62799 N/A
    947278 9cab:V (3.94) BS02 dna N/A GO:0000786 ... P62799 N/A
    947279 9cab:W (3.94) BS01 dna N/A GO:0000786 ... P84233 N/A
    947280 9cab:W (3.94) BS02 dna N/A GO:0000786 ... P84233 N/A
    947281 9cab:X (3.94) BS01 dna N/A GO:0000786 ... P62799 N/A
    947282 9cab:X (3.94) BS02 dna N/A GO:0000786 ... P62799 N/A
    947283 9cac:E (3.43) BS01 ADP N/A GO:0000492 ... Q9Y265 N/A
    947284 9cac:E (3.43) BS02 MG N/A GO:0000492 ... Q9Y265 N/A
    947285 9cac:F (3.43) BS01 ADP N/A GO:0000492 ... Q9Y230 N/A
    947286 9cac:G (3.43) BS01 ADP N/A GO:0000492 ... Q9Y265 N/A
    947287 9cac:H (3.43) BS01 ADP N/A GO:0000492 ... Q9Y230 N/A
    947288 9cac:I (3.43) BS01 ADP N/A GO:0000492 ... Q9Y265 N/A
    947289 9cac:J (3.43) BS01 ADP N/A GO:0000492 ... Q9Y230 N/A
    947290 9cac:L (3.43) BS01 ADP N/A GO:0000776 ... P60709 N/A
    947291 9cac:M (3.43) BS01 ATP N/A GO:0000723 ... O96019 N/A
    947292 9cad:D (3.05) BS01 IHP N/A GO:0000124 ... Q9Y4A5 N/A
    947293 9cae:E (3.07) BS01 AGS N/A GO:0000492 ... Q9Y265 N/A
    947294 9cae:E (3.07) BS02 MG N/A GO:0000492 ... Q9Y265 N/A
    947295 9cae:F (3.07) BS01 AGS N/A GO:0000492 ... Q9Y230 N/A
    947296 9cae:G (3.07) BS01 AGS N/A GO:0000492 ... Q9Y265 N/A
    947297 9cae:H (3.07) BS01 AGS N/A GO:0000492 ... Q9Y230 N/A
    947298 9cae:H (3.07) BS02 AGS N/A GO:0000492 ... Q9Y230 N/A
    947299 9cae:I (3.07) BS01 AGS N/A GO:0000492 ... Q9Y265 N/A
    947300 9cae:J (3.07) BS01 AGS N/A GO:0000492 ... Q9Y230 N/A
    947301 9cae:L (3.07) BS01 AGS N/A GO:0000776 ... P60709 N/A
    947302 9cae:M (3.07) BS01 AGS N/A GO:0000723 ... O96019 N/A
    947303 9caf:D (2.35) BS01 IHP N/A N/A Q9Y4A5 N/A
    947304 9cag:A (3.33) BS01 rna N/A GO:0003677 ... O95985 39828754
    947305 9cag:A (3.33) BS02 MN N/A GO:0003677 ... O95985 39828754
    947306 9cag:A (3.33) BS03 MN N/A GO:0003677 ... O95985 39828754
    947307 9cah:A (3.16) BS01 MN N/A GO:0003677 ... O95985 39828754
    947308 9cah:A (3.16) BS02 ZN N/A GO:0003677 ... O95985 39828754
    947309 9cah:A (3.16) BS03 ZN N/A GO:0003677 ... O95985 39828754
    947310 9cah:A (3.16) BS04 ZN N/A GO:0003677 ... O95985 39828754
    947311 9cai:AA (2.59) BS01 rna N/A GO:0000028 ... P46769 39209556
    947312 9cai:AB (2.59) BS01 rna N/A GO:0003735 ... P48154 39209556
    947313 9cai:AC (2.59) BS01 rna N/A GO:0003723 ... P51403 39209556
    947314 9cai:AD (2.59) BS01 rna N/A GO:0003723 ... P48152 39209556
    947315 9cai:AE (2.59) BS01 rna N/A GO:0003723 ... Q9N3X2 39209556
    947316 9cai:AF (2.59) BS01 rna N/A GO:0003723 ... P49041 39209556
    947317 9cai:AG (2.59) BS01 rna N/A GO:0003735 ... Q9NEN6 39209556
    947318 9cai:AH (2.59) BS01 rna N/A GO:0003735 ... Q23312 39209556
    947319 9cai:AI (2.59) BS01 rna N/A GO:0002181 ... P48156 39209556
    947320 9cai:AI (2.59) BS02 rna N/A GO:0002181 ... P48156 39209556
    947321 9cai:AJ (2.59) BS01 rna N/A GO:0003723 ... Q20228 39209556
    947322 9cai:AK (2.59) BS01 rna N/A GO:0002181 ... O01869 39209556
    947323 9cai:AL (2.59) BS01 rna N/A GO:0003735 ... Q20206 39209556
    947324 9cai:AM (2.59) BS01 rna N/A GO:0003735 ... P49196 39209556
    947325 9cai:AN (2.59) BS01 rna N/A GO:0000462 ... P51404 39209556
    947326 9cai:AN (2.59) BS02 rna N/A GO:0000462 ... P51404 39209556
    947327 9cai:AO (2.59) BS01 rna N/A GO:0000028 ... P48150 39209556
    947328 9cai:AP (2.59) BS01 rna N/A GO:0003723 ... Q9XVP0 39209556
    947329 9cai:AP (2.59) BS02 rna N/A GO:0003723 ... Q9XVP0 39209556
    947330 9cai:AQ (2.59) BS01 rna N/A GO:0000462 ... Q22054 39209556
    947331 9cai:AR (2.59) BS01 rna N/A GO:0003735 ... O01692 39209556
    947332 9cai:AS (2.59) BS01 rna N/A GO:0003676 ... O18240 39209556
    947333 9cai:AT (2.59) BS01 rna N/A GO:0003735 ... O18650 39209556
    947334 9cai:AU (2.59) BS01 rna N/A GO:0003735 ... Q8WQA8 39209556
    947335 9cai:AW (2.59) BS01 rna N/A GO:0002181 ... O17218 39209556
    947336 9cai:AX (2.59) BS01 rna N/A GO:0002181 ... Q19877 39209556
    947337 9cai:AY (2.59) BS01 rna N/A GO:0002181 ... Q1XFY9 39209556
    947338 9cai:AZ (2.59) BS01 rna N/A GO:0003735 ... P52821 39209556
    947339 9cai:Aa (2.59) BS01 rna N/A GO:0002181 ... O45499 39209556
    947340 9cai:Ab (2.59) BS01 rna N/A GO:0003735 ... Q9TXP0 39209556
    947341 9cai:Ac (2.59) BS01 rna N/A GO:0000028 ... Q95Y04 39209556
    947342 9cai:Ad (2.59) BS01 rna N/A GO:0002181 ... P90983 39209556
    947343 9cai:Ae (2.59) BS01 rna N/A GO:0003735 ... Q18231 39209556
    947344 9cai:Af (2.59) BS01 rna N/A GO:0003735 ... P37165 39209556
    947345 9cai:CA (2.59) BS01 rna N/A GO:0002181 ... Q9XVF7 39209556
    947346 9cai:CA (2.59) BS02 rna N/A GO:0002181 ... Q9XVF7 39209556
    947347 9cai:CB (2.59) BS01 rna N/A GO:0003723 ... P50880 39209556
    947348 9cai:CC (2.59) BS01 rna N/A GO:0003723 ... O02056 39209556
    947349 9cai:CC (2.59) BS02 rna N/A GO:0003723 ... O02056 39209556
    947350 9cai:CD (2.59) BS01 rna N/A GO:0000027 ... P49405 39209556
    947351 9cai:CD (2.59) BS02 rna N/A GO:0000027 ... P49405 39209556
    947352 9cai:CE (2.59) BS01 rna N/A GO:0002181 ... P47991 39209556
    947353 9cai:CF (2.59) BS01 rna N/A GO:0000463 ... O01802 39209556
    947354 9cai:CF (2.59) BS02 rna N/A GO:0000463 ... O01802 39209556
    947355 9cai:CG (2.59) BS01 rna N/A GO:0000470 ... Q966C6 39209556
    947356 9cai:CG (2.59) BS02 rna N/A GO:0000470 ... Q966C6 39209556
    947357 9cai:CH (2.59) BS01 rna N/A GO:0002181 ... Q95Y90 39209556
    947358 9cai:CI (2.59) BS01 rna N/A GO:0003735 ... Q09533 39209556
    947359 9cai:CI (2.59) BS02 rna N/A GO:0003735 ... Q09533 39209556
    947360 9cai:CI (2.59) BS03 rna N/A GO:0003735 ... Q09533 39209556
    947361 9cai:CJ (2.59) BS01 rna N/A GO:0003723 ... Q19162 39209556
    947362 9cai:CJ (2.59) BS02 rna N/A GO:0003723 ... Q19162 39209556
    947363 9cai:CJ (2.59) BS03 rna N/A GO:0003723 ... Q19162 39209556
    947364 9cai:CL (2.59) BS01 rna N/A GO:0003723 ... P91128 39209556
    947365 9cai:CM (2.59) BS01 rna N/A GO:0003723 ... Q9XVE9 39209556
    947366 9cai:CN (2.59) BS01 rna N/A GO:0002181 ... P91374 39209556
    947367 9cai:CN (2.59) BS02 rna N/A GO:0002181 ... P91374 39209556
    947368 9cai:CO (2.59) BS01 rna N/A GO:0003729 ... Q27389 39209556
    947369 9cai:CP (2.59) BS01 rna N/A GO:0002181 ... Q9BL19 39209556
    947370 9cai:CP (2.59) BS02 rna N/A GO:0002181 ... Q9BL19 39209556
    947371 9cai:CQ (2.59) BS01 rna N/A GO:0002181 ... O45946 39209556
    947372 9cai:CR (2.59) BS01 rna N/A GO:0003723 ... O02639 39209556
    947373 9cai:CR (2.59) BS02 rna N/A GO:0003723 ... O02639 39209556
    947374 9cai:CS (2.59) BS01 rna N/A GO:0002181 ... O44480 39209556
    947375 9cai:CS (2.59) BS02 rna N/A GO:0002181 ... O44480 39209556
    947376 9cai:CT (2.59) BS01 rna N/A GO:0003735 ... P34334 39209556
    947377 9cai:CT (2.59) BS02 rna N/A GO:0003735 ... P34334 39209556
    947378 9cai:CU (2.59) BS01 rna N/A GO:0002181 ... P52819 39209556
    947379 9cai:CV (2.59) BS01 rna N/A GO:0003735 ... P48158 39209556
    947380 9cai:CW (2.59) BS01 rna N/A GO:0002181 ... O01868 39209556
    947381 9cai:CX (2.59) BS01 rna N/A GO:0003735 ... Q20647 39209556
    947382 9cai:CX (2.59) BS02 rna N/A GO:0003735 ... Q20647 39209556
    947383 9cai:CY (2.59) BS01 rna N/A GO:0002181 ... Q19869 39209556
    947384 9cai:CY (2.59) BS02 rna N/A GO:0002181 ... Q19869 39209556
    947385 9cai:CZ (2.59) BS01 rna N/A GO:0003735 ... P91914 39209556
    947386 9cai:Ca (2.59) BS01 rna N/A GO:0003735 ... Q9BKU5 39209556
    947387 9cai:Cb (2.59) BS01 rna N/A GO:0002181 ... O45226 39209556
    947388 9cai:Cc (2.59) BS01 rna N/A GO:0003723 ... Q9XWS4 39209556
    947389 9cai:Cd (2.59) BS01 rna N/A GO:0002181 ... Q9U332 39209556
    947390 9cai:Ce (2.59) BS01 rna N/A GO:0003735 ... Q22716 39209556
    947391 9cai:Cf (2.59) BS01 rna N/A GO:0002181 ... P49180 39209556
    947392 9cai:Cg (2.59) BS01 rna N/A GO:0003735 ... A3QMC5 39209556
    947393 9cai:Ch (2.59) BS01 rna N/A GO:0000463 ... P34662 39209556
    947394 9cai:Ch (2.59) BS02 rna N/A GO:0000463 ... P34662 39209556
    947395 9cai:Ci (2.59) BS01 rna N/A GO:0002181 ... P49181 39209556
    947396 9cai:Cj (2.59) BS01 rna N/A GO:0000448 ... O62388 39209556
    947397 9cai:Cj (2.59) BS02 rna N/A GO:0000448 ... O62388 39209556
    947398 9cai:Ck (2.59) BS01 rna N/A GO:0002181 ... O17570 39209556
    947399 9cai:Cl (2.59) BS01 rna N/A GO:0002181 ... P52814 39209556
    947400 9cai:Cl (2.59) BS02 rna N/A GO:0002181 ... P52814 39209556

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).