SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    949001 9cl4:Cb (2.61) BS09 A1A0P N/A GO:0016020 ... Q607G3 39739801
    949002 9cl4:Cb (2.61) BS10 A1A0P N/A GO:0016020 ... Q607G3 39739801
    949003 9cl4:Cb (2.61) BS11 A1A0P N/A GO:0016020 ... Q607G3 39739801
    949004 9cl4:Cb (2.61) BS12 A1A0P N/A GO:0016020 ... Q607G3 39739801
    949005 9cl4:Cc (2.61) BS01 A1A0P N/A GO:0016020 ... Q607G3 39739801
    949006 9cl4:Cc (2.61) BS02 A1A0P N/A GO:0016020 ... Q607G3 39739801
    949007 9cl4:Cc (2.61) BS03 A1A0P N/A GO:0016020 ... Q607G3 39739801
    949008 9cl4:Cc (2.61) BS04 A1A0P N/A GO:0016020 ... Q607G3 39739801
    949009 9cl4:Cc (2.61) BS05 A1A0P N/A GO:0016020 ... Q607G3 39739801
    949010 9cl4:Cc (2.61) BS06 A1A0P N/A GO:0016020 ... Q607G3 39739801
    949011 9cl4:Cc (2.61) BS07 A1A0P N/A GO:0016020 ... Q607G3 39739801
    949012 9cl4:Cc (2.61) BS08 A1A0P N/A GO:0016020 ... Q607G3 39739801
    949013 9cl4:Cc (2.61) BS09 A1A0P N/A GO:0016020 ... Q607G3 39739801
    949014 9cl4:Cc (2.61) BS10 A1A0P N/A GO:0016020 ... Q607G3 39739801
    949015 9cl4:Cc (2.61) BS11 A1A0P N/A GO:0016020 ... Q607G3 39739801
    949016 9cl4:Cc (2.61) BS12 A1A0P N/A GO:0016020 ... Q607G3 39739801
    949017 9cl5:Aa (2.48) BS01 CU N/A N/A A0ACD6BAJ3 39739801
    949018 9cl5:Ab (2.48) BS01 CU N/A N/A A0ACD6BAJ3 39739801
    949019 9cl5:Ac (2.48) BS01 CU N/A N/A A0ACD6BAJ3 39739801
    949020 9cl5:Ca (2.48) BS01 peptide N/A N/A W6D653 39739801
    949021 9cl5:Ca (2.48) BS02 CU N/A N/A W6D653 39739801
    949022 9cl5:Cb (2.48) BS01 peptide N/A N/A W6D653 39739801
    949023 9cl5:Cb (2.48) BS02 CU N/A N/A W6D653 39739801
    949024 9cl5:Cc (2.48) BS01 peptide N/A N/A W6D653 39739801
    949025 9cl5:Cc (2.48) BS02 CU N/A N/A W6D653 39739801
    949026 9cl6:A (2.77) BS01 CU N/A GO:0005737 ... Q04508 39739801
    949027 9cl6:C (2.77) BS01 CU N/A N/A Q82T63 39739801
    949028 9cl6:E (2.77) BS01 CU N/A GO:0005737 ... Q04508 39739801
    949029 9cl6:G (2.77) BS01 CU N/A N/A Q82T63 39739801
    949030 9cl6:H (2.77) BS01 CU N/A GO:0005737 ... Q04508 39739801
    949031 9cl6:J (2.77) BS01 CU N/A N/A Q82T63 39739801
    949032 9cl7:E (3.83) BS01 dna N/A GO:0003676 ... Q9Y2M0 40368897
    949033 9cl8:A (2.11) BS01 peptide N/A GO:0005737 ... P52293 40852899
    949034 9cl8:A (2.11) BS02 peptide N/A GO:0005737 ... P52293 40852899
    949035 9cl9:2 (5.04) BS01 rna N/A GO:0003735 ... P0A7P5 N/A
    949036 9cl9:A (5.04) BS01 rna N/A GO:0000455 ... P37765 N/A
    949037 9cl9:D (5.04) BS01 rna N/A GO:0000027 ... P60438 N/A
    949038 9cl9:E (5.04) BS01 rna N/A GO:0001070 ... P60723 N/A
    949039 9cl9:J (5.04) BS01 rna N/A GO:0002181 ... P0AA10 N/A
    949040 9cl9:Q (5.04) BS01 rna N/A GO:0000027 ... P0A7L3 N/A
    949041 9cl9:R (5.04) BS01 rna N/A GO:0002181 ... P0AG48 N/A
    949042 9cl9:S (5.04) BS01 rna N/A GO:0002181 ... P61175 N/A
    949043 9cl9:T (5.04) BS01 rna N/A GO:0000027 ... P0ADZ0 N/A
    949044 9cl9:U (5.04) BS01 rna N/A GO:0000027 ... P60624 N/A
    949045 9cl9:Y (5.04) BS01 rna N/A GO:0000027 ... P0A7M6 N/A
    949046 9cle:A (2.34) BS01 peptide N/A GO:0005737 ... P52293 40852899
    949047 9cle:A (2.34) BS02 peptide N/A GO:0005737 ... P52293 40852899
    949048 9clf:A (2.36) BS01 peptide N/A GO:0005737 ... P52293 40852899
    949049 9clf:A (2.36) BS02 peptide N/A GO:0005737 ... P52293 40852899
    949050 9clg:A (2.42) BS01 peptide N/A GO:0005737 ... P52293 40852899
    949051 9clg:A (2.42) BS02 peptide N/A GO:0005737 ... P52293 40852899
    949052 9cli:Z (3.61) BS01 CA N/A GO:0004252 ... P00742 39528527
    949053 9cli:Z (3.61) BS02 CA N/A GO:0004252 ... P00742 39528527
    949054 9cli:Z (3.61) BS03 CA N/A GO:0004252 ... P00742 39528527
    949055 9cli:Z (3.61) BS04 CA N/A GO:0004252 ... P00742 39528527
    949056 9cli:Z (3.61) BS05 CA N/A GO:0004252 ... P00742 39528527
    949057 9cll:A (1.8) BS01 A1AZG N/A GO:0000166 ... Q8IAR7 39652589
    949058 9cll:B (1.8) BS01 A1AZG N/A GO:0000166 ... Q8IAR7 39652589
    949059 9clm:F (4.3) BS01 BCT N/A N/A N/A N/A
    949060 9clm:F (4.3) BS02 FE N/A N/A N/A N/A
    949061 9clm:G (4.3) BS01 BCT N/A N/A N/A N/A
    949062 9clm:G (4.3) BS02 BCT N/A N/A N/A N/A
    949063 9clm:G (4.3) BS03 FE N/A N/A N/A N/A
    949064 9clm:G (4.3) BS04 FE N/A N/A N/A N/A
    949065 9cln:K (4.13) BS01 CA N/A GO:0005198 ... P04133 39528527
    949066 9cln:Z (4.13) BS01 CA N/A GO:0004252 ... P00734 39528527
    949067 9cln:Z (4.13) BS02 CA N/A GO:0004252 ... P00734 39528527
    949068 9cln:Z (4.13) BS03 CA N/A GO:0004252 ... P00734 39528527
    949069 9cln:Z (4.13) BS04 CA N/A GO:0004252 ... P00734 39528527
    949070 9cln:Z (4.13) BS05 CA N/A GO:0004252 ... P00734 39528527
    949071 9clo:A (3.1) BS01 HEM N/A GO:0000287 ... P76129 39511182
    949072 9clo:A (3.1) BS02 C2E N/A GO:0000287 ... P76129 39511182
    949073 9clo:A (3.1) BS03 MG N/A GO:0000287 ... P76129 39511182
    949074 9clo:B (3.1) BS01 C2E N/A GO:0000287 ... P76129 39511182
    949075 9clo:B (3.1) BS02 HEM N/A GO:0000287 ... P76129 39511182
    949076 9clo:B (3.1) BS03 MG N/A GO:0000287 ... P76129 39511182
    949077 9clo:B (3.1) BS04 MG N/A GO:0000287 ... P76129 39511182
    949078 9clp:A (3.43) BS01 ZN N/A GO:0004222 ... Q90495 39195771
    949079 9clp:A (3.43) BS02 CA N/A GO:0004222 ... Q90495 39195771
    949080 9clp:A (3.43) BS03 CA N/A GO:0004222 ... Q90495 39195771
    949081 9clp:A (3.43) BS04 CA N/A GO:0004222 ... Q90495 39195771
    949082 9clq:A (1.85) BS01 A1AZA N/A GO:0004594 ... Q9H999 N/A
    949083 9clq:A (1.85) BS02 ANP N/A GO:0004594 ... Q9H999 N/A
    949084 9clr:A (1.99) BS01 MG N/A N/A P52704 40864494
    949085 9clr:A (1.99) BS02 MG N/A N/A P52704 40864494
    949086 9clr:B (1.99) BS01 MG N/A N/A P52704 40864494
    949087 9clr:B (1.99) BS02 MG N/A N/A P52704 40864494
    949088 9clr:B (1.99) BS03 MG N/A N/A P52704 40864494
    949089 9cls:Z (3.7) BS01 CA N/A GO:0004252 ... P00734 39528527
    949090 9cls:Z (3.7) BS02 CA N/A GO:0004252 ... P00734 39528527
    949091 9cls:Z (3.7) BS03 CA N/A GO:0004252 ... P00734 39528527
    949092 9cls:Z (3.7) BS04 CA N/A GO:0004252 ... P00734 39528527
    949093 9cls:Z (3.7) BS05 CA N/A GO:0004252 ... P00734 39528527
    949094 9cls:Z (3.7) BS06 CA N/A GO:0004252 ... P00734 39528527
    949095 9clt:F (3.6) BS01 BCT N/A N/A N/A N/A
    949096 9clt:F (3.6) BS02 FE N/A N/A N/A N/A
    949097 9clw:R (3.19) BS01 9UJ N/A GO:0002232 ... O15552 40533560
    949098 9clw:R (3.19) BS02 A1LYC N/A GO:0002232 ... O15552 40533560
    949099 9clw:R (3.19) BS03 CLR N/A GO:0002232 ... O15552 40533560
    949100 9cly:A (2.16) BS01 NDP N/A GO:0006629 ... Q8E0R2 N/A
    949101 9cly:B (2.16) BS01 NDP N/A GO:0006629 ... Q8E0R2 N/A
    949102 9cm2:Z (5.01) BS01 CA N/A GO:0004252 ... P00742 39528527
    949103 9cm2:Z (5.01) BS02 CA N/A GO:0004252 ... P00742 39528527
    949104 9cm2:Z (5.01) BS03 CA N/A GO:0004252 ... P00742 39528527
    949105 9cm2:Z (5.01) BS04 CA N/A GO:0004252 ... P00742 39528527
    949106 9cm3:R (3.06) BS01 9UJ N/A GO:0002232 ... O15552 40533560
    949107 9cm3:R (3.06) BS02 A1AZC N/A GO:0002232 ... O15552 40533560
    949108 9cm3:R (3.06) BS03 CLR N/A GO:0002232 ... O15552 40533560
    949109 9cm4:A (1.82) BS01 rna N/A N/A N/A N/A
    949110 9cm4:H (1.82) BS01 rna N/A N/A N/A N/A
    949111 9cm6:A (1.47) BS01 ZN N/A GO:0004022 ... P00327 N/A
    949112 9cm6:A (1.47) BS02 ZN N/A GO:0004022 ... P00327 N/A
    949113 9cm6:A (1.47) BS03 NAI N/A GO:0004022 ... P00327 N/A
    949114 9cm6:A (1.47) BS04 CXF N/A GO:0004022 ... P00327 N/A
    949115 9cm6:B (1.47) BS01 ZN N/A GO:0004022 ... P00327 N/A
    949116 9cm6:B (1.47) BS02 ZN N/A GO:0004022 ... P00327 N/A
    949117 9cm6:B (1.47) BS03 NAI N/A GO:0004022 ... P00327 N/A
    949118 9cm6:B (1.47) BS04 CXF N/A GO:0004022 ... P00327 N/A
    949119 9cm7:R (3.29) BS01 9UJ N/A GO:0002232 ... O15552 40533560
    949120 9cm7:R (3.29) BS02 A1AZB N/A GO:0002232 ... O15552 40533560
    949121 9cm9:Z (4.0) BS01 CA N/A GO:0004252 ... P00742 39528527
    949122 9cm9:Z (4.0) BS02 CA N/A GO:0004252 ... P00742 39528527
    949123 9cm9:Z (4.0) BS03 CA N/A GO:0004252 ... P00742 39528527
    949124 9cm9:Z (4.0) BS04 CA N/A GO:0004252 ... P00742 39528527
    949125 9cm9:Z (4.0) BS05 CA N/A GO:0004252 ... P00742 39528527
    949126 9cm9:Z (4.0) BS06 CA N/A GO:0004252 ... P00742 39528527
    949127 9cma:A (3.97) BS01 dna N/A GO:0003676 ... Q9Y2M0 40368897
    949128 9cma:A (3.97) BS02 dna N/A GO:0003676 ... Q9Y2M0 40368897
    949129 9cmb:A (2.15) BS01 dna N/A GO:0003700 ... P17947 N/A
    949130 9cmb:A (2.15) BS02 dna N/A GO:0003700 ... P17947 N/A
    949131 9cmb:C (2.15) BS01 dna N/A GO:0003700 ... P17947 N/A
    949132 9cmb:C (2.15) BS02 dna N/A GO:0003700 ... P17947 N/A
    949133 9cme:A (2.7) BS01 ZN N/A N/A Q46085 N/A
    949134 9cme:A (2.7) BS02 CA N/A N/A Q46085 N/A
    949135 9cmf:A (3.11) BS01 HEM N/A GO:0000287 ... P76129 39511182
    949136 9cmf:A (3.11) BS02 C2E N/A GO:0000287 ... P76129 39511182
    949137 9cmf:A (3.11) BS03 MG N/A GO:0000287 ... P76129 39511182
    949138 9cmf:B (3.11) BS01 HEM N/A GO:0000287 ... P76129 39511182
    949139 9cmf:B (3.11) BS02 C2E N/A GO:0000287 ... P76129 39511182
    949140 9cmf:B (3.11) BS03 MG N/A GO:0000287 ... P76129 39511182
    949141 9cmf:B (3.11) BS04 MG N/A GO:0000287 ... P76129 39511182
    949142 9cmg:F (3.71) BS01 BCT N/A N/A N/A N/A
    949143 9cmg:F (3.71) BS02 BCT N/A N/A N/A N/A
    949144 9cmg:F (3.71) BS03 FE N/A N/A N/A N/A
    949145 9cmg:F (3.71) BS04 FE N/A N/A N/A N/A
    949146 9cmi:A (2.83) BS01 AV0 N/A GO:0004888 ... O14493 39383874
    949147 9cmi:H (2.83) BS01 AV0 N/A N/A N/A 39383874
    949148 9cmk:A (1.75) BS01 A1ATF N/A N/A P42336 40705882
    949149 9cmk:B (1.75) BS01 A1ATF N/A N/A P42336 40705882
    949150 9cml:A (2.01) BS01 A1AZD N/A N/A P42336 40705882
    949151 9cml:B (2.01) BS01 A1AZD N/A N/A P42336 40705882
    949152 9cmm:A (3.1) BS01 GTP N/A N/A P68363 N/A
    949153 9cmm:B (3.1) BS01 G2P N/A N/A P07437 N/A
    949154 9cmm:C (3.1) BS01 GTP N/A N/A P68363 N/A
    949155 9cmm:D (3.1) BS01 G2P N/A N/A P07437 N/A
    949156 9cmm:E (3.1) BS01 GTP N/A N/A P68363 N/A
    949157 9cmm:F (3.1) BS01 G2P N/A N/A P07437 N/A
    949158 9cmm:I (3.1) BS01 GTP N/A N/A P68363 N/A
    949159 9cmm:Q (3.1) BS01 G2P N/A N/A P07437 N/A
    949160 9cmo:L (4.17) BS01 CA N/A GO:0005198 ... A0A348FV85 39528527
    949161 9cmo:Z (4.17) BS01 CA N/A GO:0004252 ... P00734 39528527
    949162 9cmo:Z (4.17) BS02 CA N/A GO:0004252 ... P00734 39528527
    949163 9cmo:Z (4.17) BS03 CA N/A GO:0004252 ... P00734 39528527
    949164 9cmo:Z (4.17) BS04 CA N/A GO:0004252 ... P00734 39528527
    949165 9cmo:Z (4.17) BS05 CA N/A GO:0004252 ... P00734 39528527
    949166 9cmp:A (3.3) BS01 rna N/A GO:0000340 ... Q9UKV8 39932188
    949167 9cmp:A (3.3) BS02 rna N/A GO:0000340 ... Q9UKV8 39932188
    949168 9cmp:A (3.3) BS03 MG N/A GO:0000340 ... Q9UKV8 39932188
    949169 9cmq:A (1.49) BS01 ZN N/A GO:0004022 ... P00327 N/A
    949170 9cmq:A (1.49) BS02 ZN N/A GO:0004022 ... P00327 N/A
    949171 9cmq:A (1.49) BS03 NAI N/A GO:0004022 ... P00327 N/A
    949172 9cmq:A (1.49) BS04 CXF N/A GO:0004022 ... P00327 N/A
    949173 9cmq:B (1.49) BS01 ZN N/A GO:0004022 ... P00327 N/A
    949174 9cmq:B (1.49) BS02 ZN N/A GO:0004022 ... P00327 N/A
    949175 9cmq:B (1.49) BS03 NAI N/A GO:0004022 ... P00327 N/A
    949176 9cmq:B (1.49) BS04 CXF N/A GO:0004022 ... P00327 N/A
    949177 9cms:A (2.0) BS01 7YY N/A GO:0008233 ... P0DTD1 39370853
    949178 9cms:B (2.0) BS01 7YY N/A GO:0008233 ... P0DTD1 39370853
    949179 9cmt:A (3.17) BS01 peptide N/A GO:0005634 ... P45973 39803508
    949180 9cmt:A (3.17) BS02 F6Z N/A GO:0005634 ... P45973 39803508
    949181 9cmt:B (3.17) BS01 peptide N/A GO:0005634 ... P45973 39803508
    949182 9cmt:B (3.17) BS02 F6Z N/A GO:0005634 ... P45973 39803508
    949183 9cmt:D (3.17) BS01 peptide N/A GO:0005634 ... P45973 39803508
    949184 9cmt:D (3.17) BS02 peptide N/A GO:0005634 ... P45973 39803508
    949185 9cmt:E (3.17) BS01 peptide N/A GO:0005634 ... P45973 39803508
    949186 9cmt:E (3.17) BS02 F6Z N/A GO:0005634 ... P45973 39803508
    949187 9cmu:A (2.0) BS01 7YY N/A GO:0008233 ... P0DTD1 39370853
    949188 9cmv:A (3.01) BS01 A1AZD N/A GO:0001944 ... P42336 40705882
    949189 9cmv:B (3.01) BS01 A1AZD N/A GO:0003924 ... P01116 40705882
    949190 9cmv:B (3.01) BS02 GNP N/A GO:0003924 ... P01116 40705882
    949191 9cmv:B (3.01) BS03 MG N/A GO:0003924 ... P01116 40705882
    949192 9cmz:A (2.45) BS01 A1AZE N/A GO:0000166 ... Q8IDW1 N/A
    949193 9cmz:B (2.45) BS01 A1AZE N/A GO:0000166 ... Q8IDW1 N/A
    949194 9cmz:C (2.45) BS01 A1AZE N/A GO:0000166 ... Q8IDW1 N/A
    949195 9cn3:0 (2.62) BS01 rna N/A GO:0003723 ... Q9BYC8 39907106
    949196 9cn3:0 (2.62) BS02 ZN N/A GO:0003723 ... Q9BYC8 39907106
    949197 9cn3:1 (2.62) BS01 rna N/A GO:0003735 ... O75394 39907106
    949198 9cn3:2 (2.62) BS01 rna N/A GO:0003735 ... Q9BQ48 39907106
    949199 9cn3:3 (2.62) BS01 rna N/A GO:0003735 ... Q9NZE8 39907106
    949200 9cn3:4 (2.62) BS01 rna N/A GO:0003735 ... Q9P0J6 39907106

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).