SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    949201 9cn3:4 (2.62) BS02 ZN N/A GO:0003735 ... Q9P0J6 39907106
    949202 9cn3:5 (2.62) BS01 rna N/A GO:0003723 ... Q9BZE1 39907106
    949203 9cn3:6 (2.62) BS01 rna N/A GO:0005515 ... Q96DV4 39907106
    949204 9cn3:6 (2.62) BS02 rna N/A GO:0005515 ... Q96DV4 39907106
    949205 9cn3:8 (2.62) BS01 rna N/A GO:0003723 ... Q9NQ50 39907106
    949206 9cn3:9 (2.62) BS01 rna N/A GO:0003723 ... Q8IXM3 39907106
    949207 9cn3:D (2.62) BS01 rna N/A GO:0003723 ... Q5T653 39907106
    949208 9cn3:E (2.62) BS01 rna N/A GO:0003723 ... P09001 39907106
    949209 9cn3:F (2.62) BS01 rna N/A GO:0003723 ... Q9BYD3 39907106
    949210 9cn3:H (2.62) BS01 rna N/A GO:0003723 ... Q9BYD2 39907106
    949211 9cn3:I (2.62) BS01 rna N/A GO:0003723 ... Q7Z7H8 39907106
    949212 9cn3:I (2.62) BS02 peptide N/A GO:0003723 ... Q7Z7H8 39907106
    949213 9cn3:J (2.62) BS01 rna N/A GO:0003723 ... Q9Y3B7 39907106
    949214 9cn3:K (2.62) BS01 rna N/A GO:0003723 ... Q9BYD1 39907106
    949215 9cn3:L (2.62) BS01 rna N/A GO:0003723 ... Q6P1L8 39907106
    949216 9cn3:M (2.62) BS01 rna N/A GO:0003723 ... Q9P015 39907106
    949217 9cn3:N (2.62) BS01 rna N/A GO:0003735 ... Q9NX20 39907106
    949218 9cn3:O (2.62) BS01 rna N/A GO:0003735 ... Q9NRX2 39907106
    949219 9cn3:P (2.62) BS01 rna N/A GO:0003735 ... Q9H0U6 39907106
    949220 9cn3:P (2.62) BS02 rna N/A GO:0003735 ... Q9H0U6 39907106
    949221 9cn3:Q (2.62) BS01 rna N/A GO:0003735 ... P49406 39907106
    949222 9cn3:R (2.62) BS01 rna N/A GO:0003723 ... Q9BYC9 39907106
    949223 9cn3:S (2.62) BS01 rna N/A GO:0003723 ... Q7Z2W9 39907106
    949224 9cn3:T (2.62) BS01 rna N/A GO:0003735 ... Q9NWU5 39907106
    949225 9cn3:TA (2.62) BS01 peptide N/A GO:0003723 ... P52815 39907106
    949226 9cn3:U (2.62) BS01 rna N/A GO:0003723 ... Q16540 39907106
    949227 9cn3:V (2.62) BS01 rna N/A GO:0003723 ... Q96A35 39907106
    949228 9cn3:W (2.62) BS01 rna N/A GO:0003723 ... Q9P0M9 39907106
    949229 9cn3:X (2.62) BS01 rna N/A GO:0003723 ... Q13084 39907106
    949230 9cn3:Y (2.62) BS01 rna N/A GO:0003735 ... Q9HD33 39907106
    949231 9cn3:Z (2.62) BS01 rna N/A GO:0003735 ... Q8TCC3 39907106
    949232 9cn3:a (2.62) BS01 rna N/A GO:0003723 ... Q9Y6G3 39907106
    949233 9cn3:b (2.62) BS01 rna N/A GO:0003735 ... Q8N983 39907106
    949234 9cn3:c (2.62) BS01 rna N/A GO:0003723 ... Q9H9J2 39907106
    949235 9cn3:d (2.62) BS01 rna N/A GO:0003723 ... Q9BRJ2 39907106
    949236 9cn3:f (2.62) BS01 rna N/A GO:0005515 ... Q96GC5 39907106
    949237 9cn3:f (2.62) BS02 rna N/A GO:0005515 ... Q96GC5 39907106
    949238 9cn3:g (2.62) BS01 rna N/A GO:0003735 ... Q13405 39907106
    949239 9cn3:i (2.62) BS01 rna N/A GO:0003735 ... Q4U2R6 39907106
    949240 9cn3:j (2.62) BS01 rna N/A GO:0003735 ... Q86TS9 39907106
    949241 9cn3:l (2.62) BS01 rna N/A GO:0003723 ... Q6P161 39907106
    949242 9cn3:o (2.62) BS01 rna N/A GO:0003735 ... Q9BQC6 39907106
    949243 9cn3:q (2.62) BS01 rna N/A GO:0003735 ... Q8TAE8 39907106
    949244 9cn3:r (2.62) BS01 rna N/A GO:0003735 ... Q9NVS2 39907106
    949245 9cn3:s (2.62) BS01 rna N/A GO:0003723 ... Q9NP92 39907106
    949246 9cnu:A (2.99) BS01 peptide N/A GO:0016032 ... P18042 39864060
    949247 9cnv:A (3.16) BS01 peptide N/A GO:0016032 ... P18042 39864060
    949248 9cnx:A (3.55) BS01 peptide N/A GO:0019867 ... P0A940 39379361
    949249 9cnz:A (3.1) BS01 peptide N/A GO:0019867 ... P0A940 39379361
    949250 9cnz:A (3.1) BS02 peptide N/A GO:0019867 ... P0A940 39379361
    949251 9co0:A (3.3) BS01 peptide N/A GO:0019867 ... P0A940 39379361
    949252 9co0:A (3.3) BS02 peptide N/A GO:0019867 ... P0A940 39379361
    949253 9co2:A (2.75) BS01 peptide N/A GO:0019867 ... P0A940 39379361
    949254 9co2:B (2.75) BS01 peptide N/A GO:0019867 ... P0A940 39379361
    949255 9co2:C (2.75) BS01 peptide N/A GO:0019867 ... P0A940 39379361
    949256 9co2:D (2.75) BS01 peptide N/A GO:0019867 ... P0A940 39379361
    949257 9co5:A (2.77) BS01 A1AZI N/A GO:0003007 ... P62942 40059881
    949258 9co5:B (2.77) BS01 A1AZI N/A GO:0008017 ... Q15691 40059881
    949259 9coc:A (2.9) BS01 GTP N/A N/A P68363 N/A
    949260 9coc:B (2.9) BS01 GDP N/A N/A P07437 N/A
    949261 9coc:C (2.9) BS01 GTP N/A N/A P68363 N/A
    949262 9coc:D (2.9) BS01 GTP N/A N/A P68363 N/A
    949263 9coc:E (2.9) BS01 GDP N/A N/A P07437 N/A
    949264 9coc:E (2.9) BS02 GTP N/A N/A P07437 N/A
    949265 9coc:F (2.9) BS01 GDP N/A N/A P07437 N/A
    949266 9coc:I (2.9) BS01 GTP N/A N/A P68363 N/A
    949267 9coc:K (2.9) BS01 GDP N/A N/A P07437 N/A
    949268 9cof:B (2.72) BS01 peptide N/A N/A Q786F3 N/A
    949269 9cof:B (2.72) BS02 peptide N/A N/A Q786F3 N/A
    949270 9cof:D (2.72) BS01 peptide N/A N/A Q786F3 N/A
    949271 9cof:D (2.72) BS02 peptide N/A N/A Q786F3 N/A
    949272 9cof:F (2.72) BS01 peptide N/A N/A Q786F3 N/A
    949273 9cof:F (2.72) BS02 peptide N/A N/A Q786F3 N/A
    949274 9cog:B (2.65) BS01 peptide N/A N/A Q786F3 N/A
    949275 9cog:B (2.65) BS02 peptide N/A N/A Q786F3 N/A
    949276 9cog:D (2.65) BS01 peptide N/A N/A Q786F3 N/A
    949277 9cog:D (2.65) BS02 peptide N/A N/A Q786F3 N/A
    949278 9cog:F (2.65) BS01 peptide N/A N/A Q786F3 N/A
    949279 9cog:F (2.65) BS02 peptide N/A N/A Q786F3 N/A
    949280 9cok:B (2.92) BS01 peptide N/A GO:0005515 ... Q9IK91 40683863
    949281 9cok:C (2.92) BS01 peptide N/A GO:0005515 ... Q9IK91 40683863
    949282 9cok:D (2.92) BS01 peptide N/A GO:0005515 ... Q9IK91 40683863
    949283 9cok:E (2.92) BS01 peptide N/A GO:0005515 ... Q9IK91 40683863
    949284 9cok:G (2.92) BS01 peptide N/A GO:0005515 ... Q9IK91 40683863
    949285 9coo:R (3.73) BS01 CA N/A GO:0001523 ... P01130 39663455
    949286 9coo:R (3.73) BS02 CA N/A GO:0001523 ... P01130 39663455
    949287 9coo:R (3.73) BS03 CA N/A GO:0001523 ... P01130 39663455
    949288 9cop:A (2.7) BS01 ADP N/A GO:0000139 ... P17255 39625975
    949289 9cop:B (2.7) BS01 ADP N/A GO:0000139 ... P16140 39625975
    949290 9cop:E (2.7) BS01 MG N/A GO:0000139 ... P17255 39625975
    949291 9cop:E (2.7) BS02 ADP N/A GO:0000139 ... P17255 39625975
    949292 9cop:F (2.7) BS01 ADP N/A GO:0000139 ... P16140 39625975
    949293 9cor:A (2.55) BS01 HEM N/A GO:0002933 ... P08684 39792691
    949294 9cor:A (2.55) BS02 A1A07 N/A GO:0002933 ... P08684 39792691
    949295 9cos:A (2.75) BS01 HEM N/A GO:0002933 ... P08684 39792691
    949296 9cos:A (2.75) BS02 A1A06 N/A GO:0002933 ... P08684 39792691
    949297 9cot:A (2.81) BS01 HEM N/A GO:0002933 ... P08684 39792691
    949298 9cot:A (2.81) BS02 A1A08 N/A GO:0002933 ... P08684 39792691
    949299 9cou:A (2.81) BS01 HEM N/A GO:0002933 ... P08684 39792691
    949300 9cou:A (2.81) BS02 A1A4U N/A GO:0002933 ... P08684 39792691
    949301 9cov:A (2.6) BS01 HEM N/A GO:0002933 ... P08684 39792691
    949302 9cov:A (2.6) BS02 A1A4S N/A GO:0002933 ... P08684 39792691
    949303 9cow:A (2.3) BS01 HEM N/A GO:0002933 ... P08684 39792691
    949304 9cow:A (2.3) BS02 A1A4V N/A GO:0002933 ... P08684 39792691
    949305 9cox:A (2.72) BS01 HEM N/A GO:0002933 ... P08684 39792691
    949306 9cox:A (2.72) BS02 A1A4K N/A GO:0002933 ... P08684 39792691
    949307 9coy:A (2.65) BS01 HEM N/A GO:0002933 ... P08684 39792691
    949308 9coy:A (2.65) BS02 A1A4T N/A GO:0002933 ... P08684 39792691
    949309 9cp0:A (1.85) BS01 CA N/A N/A N/A 39459929
    949310 9cp0:B (1.85) BS01 CA N/A N/A N/A 39459929
    949311 9cp1:A (2.97) BS01 rna N/A N/A Q97Y91 N/A
    949312 9cp1:B (2.97) BS01 rna N/A N/A Q97Y91 N/A
    949313 9cp1:B (2.97) BS02 dna N/A N/A Q97Y91 N/A
    949314 9cp1:C (2.97) BS01 rna N/A N/A Q97Y91 N/A
    949315 9cp1:C (2.97) BS02 dna N/A N/A Q97Y91 N/A
    949316 9cp1:D (2.97) BS01 rna N/A N/A Q97Y91 N/A
    949317 9cp1:E (2.97) BS01 rna N/A N/A Q97Y91 N/A
    949318 9cp1:E (2.97) BS02 dna N/A N/A Q97Y91 N/A
    949319 9cp1:F (2.97) BS01 rna N/A N/A Q97Y91 N/A
    949320 9cp1:G (2.97) BS01 rna N/A N/A Q97Y92 N/A
    949321 9cp2:A (2.94) BS01 rna N/A N/A Q97Y91 N/A
    949322 9cp2:B (2.94) BS01 rna N/A N/A Q97Y91 N/A
    949323 9cp2:B (2.94) BS02 dna N/A N/A Q97Y91 N/A
    949324 9cp2:C (2.94) BS01 rna N/A N/A Q97Y91 N/A
    949325 9cp2:C (2.94) BS02 dna N/A N/A Q97Y91 N/A
    949326 9cp2:D (2.94) BS01 rna N/A N/A Q97Y91 N/A
    949327 9cp2:G (2.94) BS01 rna N/A N/A Q97Y92 N/A
    949328 9cp3:A (2.94) BS01 rna N/A N/A Q97Y91 N/A
    949329 9cp3:B (2.94) BS01 rna N/A N/A Q97Y91 N/A
    949330 9cp3:B (2.94) BS02 dna N/A N/A Q97Y91 N/A
    949331 9cp3:C (2.94) BS01 rna N/A N/A Q97Y91 N/A
    949332 9cp3:C (2.94) BS02 dna N/A N/A Q97Y91 N/A
    949333 9cp3:D (2.94) BS01 rna N/A N/A Q97Y91 N/A
    949334 9cp3:D (2.94) BS02 dna N/A N/A Q97Y91 N/A
    949335 9cp3:E (2.94) BS01 rna N/A N/A Q97Y91 N/A
    949336 9cp3:G (2.94) BS01 rna N/A N/A Q97Y92 N/A
    949337 9cp4:A (3.42) BS01 A1AZJ N/A GO:0001504 ... P48066 40268946
    949338 9cp4:A (3.42) BS02 CL N/A GO:0001504 ... P48066 40268946
    949339 9cp5:A (3.51) BS01 CL N/A GO:0001504 ... P48066 40268946
    949340 9cp7:A (1.751) BS01 ZN N/A GO:0000105 ... Q46N53 39263660
    949341 9cp7:A (1.751) BS02 NAI N/A GO:0000105 ... Q46N53 39263660
    949342 9cp7:A (1.751) BS03 OCS N/A GO:0000105 ... Q46N53 39263660
    949343 9cp7:A (1.751) BS04 OCS N/A GO:0000105 ... Q46N53 39263660
    949344 9cp7:B (1.751) BS01 OCS N/A GO:0000105 ... Q46N53 39263660
    949345 9cp7:B (1.751) BS02 ZN N/A GO:0000105 ... Q46N53 39263660
    949346 9cp7:B (1.751) BS03 NAI N/A GO:0000105 ... Q46N53 39263660
    949347 9cp7:B (1.751) BS04 OCS N/A GO:0000105 ... Q46N53 39263660
    949348 9cp8:A (1.57) BS01 ZN N/A GO:0000105 ... Q46N53 39263660
    949349 9cp8:A (1.57) BS02 NAI N/A GO:0000105 ... Q46N53 39263660
    949350 9cp8:A (1.57) BS03 3SL N/A GO:0000105 ... Q46N53 39263660
    949351 9cp8:B (1.57) BS01 ZN N/A GO:0000105 ... Q46N53 39263660
    949352 9cp8:B (1.57) BS02 NAI N/A GO:0000105 ... Q46N53 39263660
    949353 9cp8:B (1.57) BS03 3SL N/A GO:0000105 ... Q46N53 39263660
    949354 9cp9:A (2.013) BS01 ZN N/A GO:0000105 ... Q46N53 39263660
    949355 9cp9:A (2.013) BS02 NAI N/A GO:0000105 ... Q46N53 39263660
    949356 9cp9:A (2.013) BS03 A1AZH N/A GO:0000105 ... Q46N53 39263660
    949357 9cp9:B (2.013) BS01 ZN N/A GO:0000105 ... Q46N53 39263660
    949358 9cp9:B (2.013) BS02 NAI N/A GO:0000105 ... Q46N53 39263660
    949359 9cp9:B (2.013) BS03 A1AZH N/A GO:0000105 ... Q46N53 39263660
    949360 9cpa:0 (6.0) BS01 rna N/A GO:0003735 ... G1T1F0 40791316
    949361 9cpa:A (6.0) BS01 rna N/A GO:0003676 ... G1T2G4 40791316
    949362 9cpa:A (6.0) BS02 rna N/A GO:0003676 ... G1T2G4 40791316
    949363 9cpa:B (6.0) BS01 rna N/A GO:0000049 ... A0A6P3CWF8 40791316
    949364 9cpa:C (6.0) BS01 rna N/A GO:0000028 ... G1TLT8 40791316
    949365 9cpa:D (6.0) BS01 rna N/A GO:0001732 ... G1SQV5 40791316
    949366 9cpa:E (6.0) BS01 rna N/A GO:0003723 ... G1SWM1 40791316
    949367 9cpa:F (6.0) BS01 rna N/A GO:0003723 ... G1TNM3 40791316
    949368 9cpa:G (6.0) BS01 rna N/A GO:0003723 ... G1TK17 40791316
    949369 9cpa:H (6.0) BS01 rna N/A GO:0003723 ... U3KMN4 40791316
    949370 9cpa:I (6.0) BS01 rna N/A GO:0003735 ... G1TM55 40791316
    949371 9cpa:J (6.0) BS01 rna N/A GO:0003735 ... G1SVB0 40791316
    949372 9cpa:K (6.0) BS01 rna N/A GO:0003735 ... G1TJW1 40791316
    949373 9cpa:L (6.0) BS01 rna N/A GO:0003723 ... B7NZS8 40791316
    949374 9cpa:M (6.0) BS01 rna N/A GO:0003723 ... G1TPV3 40791316
    949375 9cpa:N (6.0) BS01 rna N/A GO:0003735 ... G1TRM4 40791316
    949376 9cpa:O (6.0) BS01 rna N/A GO:0003735 ... G1SFR8 40791316
    949377 9cpa:P (6.0) BS01 rna N/A GO:0003735 ... G1SP51 40791316
    949378 9cpa:R (6.0) BS01 rna N/A GO:0000028 ... G1U0Q2 40791316
    949379 9cpa:S (6.0) BS01 rna N/A GO:0000462 ... G1SGX4 40791316
    949380 9cpa:T (6.0) BS01 rna N/A GO:0003735 ... G1TU13 40791316
    949381 9cpa:U (6.0) BS01 rna N/A GO:0003676 ... G1TPG3 40791316
    949382 9cpa:V (6.0) BS01 rna N/A GO:0000028 ... G1TN62 40791316
    949383 9cpa:W (6.0) BS01 rna N/A GO:0003723 ... G1SIZ2 40791316
    949384 9cpa:Y (6.0) BS01 rna N/A GO:0003735 ... G1TG89 40791316
    949385 9cpa:Z (6.0) BS01 rna N/A GO:0003735 ... G1SZ47 40791316
    949386 9cpa:a (6.0) BS01 rna N/A GO:0003735 ... A0A5F9D2E6 40791316
    949387 9cpa:b (6.0) BS01 rna N/A GO:0003729 ... G1TFE8 40791316
    949388 9cpa:c (6.0) BS01 rna N/A GO:0003735 ... G1TZ76 40791316
    949389 9cpa:d (6.0) BS01 rna N/A GO:0000028 ... G1TIB4 40791316
    949390 9cpa:e (6.0) BS01 rna N/A GO:0002181 ... G1U7M4 40791316
    949391 9cpa:f (6.0) BS01 rna N/A GO:0003735 ... G1SK22 40791316
    949392 9cpa:g (6.0) BS01 rna N/A GO:0001891 ... G1SJB4 40791316
    949393 9cpa:h (6.0) BS01 rna N/A GO:0001731 ... Q7Z478 40791316
    949394 9cpa:i (6.0) BS01 rna N/A GO:0003735 ... G1T8A2 40791316
    949395 9cpa:k (6.0) BS01 rna N/A GO:0001732 ... G1U971 40791316
    949396 9cpa:n (6.0) BS01 rna N/A GO:0003735 ... G1TDB3 40791316
    949397 9cpa:p (6.0) BS01 rna N/A GO:0001732 ... P55884 40791316
    949398 9cpa:x (6.0) BS01 rna N/A GO:0003735 ... G1TN72 40791316
    949399 9cpa:y (6.0) BS01 rna N/A GO:0001732 ... A0A5F9C991 40791316
    949400 9cpb:3A (3.52) BS01 peptide N/A GO:0005737 ... Q32L77 39743588

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).