SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    950001 9cpc:TM (3.65) BS01 GDP N/A GO:0003924 ... A0A5G2QGK1 39743588
    950002 9cpc:TN (3.65) BS01 GTP N/A GO:0003924 ... A0A5G2QGK1 39743588
    950003 9cpc:TN (3.65) BS02 GDP N/A GO:0003924 ... A0A5G2QGK1 39743588
    950004 9cpc:TO (3.65) BS01 GTP N/A GO:0003924 ... A0A5G2QGK1 39743588
    950005 9cpc:TO (3.65) BS02 GDP N/A GO:0003924 ... A0A5G2QGK1 39743588
    950006 9cpc:TP (3.65) BS01 GTP N/A GO:0003924 ... A0A5G2QGK1 39743588
    950007 9cpc:TP (3.65) BS02 GDP N/A GO:0003924 ... A0A5G2QGK1 39743588
    950008 9cpc:UA (3.65) BS01 GTP N/A GO:0000226 ... A0A5G2QX54 39743588
    950009 9cpc:UB (3.65) BS01 GDP N/A GO:0003924 ... A0A5G2QGK1 39743588
    950010 9cpc:UB (3.65) BS02 GTP N/A GO:0003924 ... A0A5G2QGK1 39743588
    950011 9cpc:UE (3.65) BS01 GTP N/A GO:0000226 ... A0A5G2QX54 39743588
    950012 9cpc:UF (3.65) BS01 GTP N/A GO:0000226 ... A0A5G2QX54 39743588
    950013 9cpc:UG (3.65) BS01 GTP N/A GO:0000226 ... A0A5G2QX54 39743588
    950014 9cpc:UH (3.65) BS01 GTP N/A GO:0000226 ... A0A5G2QX54 39743588
    950015 9cpc:UI (3.65) BS01 GTP N/A GO:0000226 ... A0A5G2QX54 39743588
    950016 9cpc:UM (3.65) BS01 GTP N/A GO:0003924 ... A0A5G2QGK1 39743588
    950017 9cpc:UM (3.65) BS02 GDP N/A GO:0003924 ... A0A5G2QGK1 39743588
    950018 9cpc:UN (3.65) BS01 GTP N/A GO:0003924 ... A0A5G2QGK1 39743588
    950019 9cpc:UN (3.65) BS02 GDP N/A GO:0003924 ... A0A5G2QGK1 39743588
    950020 9cpc:UO (3.65) BS01 GTP N/A GO:0003924 ... A0A5G2QGK1 39743588
    950021 9cpc:UO (3.65) BS02 GDP N/A GO:0003924 ... A0A5G2QGK1 39743588
    950022 9cpc:UP (3.65) BS01 GDP N/A GO:0003924 ... A0A5G2QGK1 39743588
    950023 9cpc:VA (3.65) BS01 GTP N/A GO:0000226 ... A0A5G2QX54 39743588
    950024 9cpc:VB (3.65) BS01 GDP N/A GO:0003924 ... A0A5G2QGK1 39743588
    950025 9cpc:VF (3.65) BS01 GTP N/A GO:0000226 ... A0A5G2QX54 39743588
    950026 9cpc:VG (3.65) BS01 GTP N/A GO:0000226 ... A0A5G2QX54 39743588
    950027 9cpc:VH (3.65) BS01 GTP N/A GO:0000226 ... A0A5G2QX54 39743588
    950028 9cpc:VI (3.65) BS01 GTP N/A GO:0000226 ... A0A5G2QX54 39743588
    950029 9cpc:VJ (3.65) BS01 GTP N/A GO:0000226 ... A0A5G2QX54 39743588
    950030 9cpc:VN (3.65) BS01 GDP N/A GO:0003924 ... A0A5G2QGK1 39743588
    950031 9cpc:VO (3.65) BS01 GTP N/A GO:0003924 ... A0A5G2QGK1 39743588
    950032 9cpc:VO (3.65) BS02 GDP N/A GO:0003924 ... A0A5G2QGK1 39743588
    950033 9cpc:VP (3.65) BS01 GDP N/A GO:0003924 ... A0A5G2QGK1 39743588
    950034 9cpc:VQ (3.65) BS01 GDP N/A GO:0003924 ... A0A5G2QGK1 39743588
    950035 9cpc:WA (3.65) BS01 GTP N/A GO:0000226 ... A0A5G2QX54 39743588
    950036 9cpc:WB (3.65) BS01 GDP N/A GO:0003924 ... A0A5G2QGK1 39743588
    950037 9cpc:WE (3.65) BS01 GTP N/A GO:0000226 ... A0A5G2QX54 39743588
    950038 9cpc:WF (3.65) BS01 GTP N/A GO:0000226 ... A0A5G2QX54 39743588
    950039 9cpc:WG (3.65) BS01 GTP N/A GO:0000226 ... A0A5G2QX54 39743588
    950040 9cpc:WH (3.65) BS01 GTP N/A GO:0000226 ... A0A5G2QX54 39743588
    950041 9cpc:WI (3.65) BS01 GTP N/A GO:0000226 ... A0A5G2QX54 39743588
    950042 9cpc:WM (3.65) BS01 GDP N/A GO:0003924 ... A0A5G2QGK1 39743588
    950043 9cpc:WN (3.65) BS01 GDP N/A GO:0003924 ... A0A5G2QGK1 39743588
    950044 9cpc:WO (3.65) BS01 GDP N/A GO:0003924 ... A0A5G2QGK1 39743588
    950045 9cpc:WP (3.65) BS01 GDP N/A GO:0003924 ... A0A5G2QGK1 39743588
    950046 9cpc:WQ (3.65) BS01 GDP N/A GO:0003924 ... A0A5G2QGK1 39743588
    950047 9cpf:A (1.7) BS01 peptide N/A GO:0008643 ... N/A 40187349
    950048 9cpf:A (1.7) BS02 GLC N/A GO:0008643 ... N/A 40187349
    950049 9cpf:A (1.7) BS03 GLC N/A GO:0008643 ... N/A 40187349
    950050 9cpf:B (1.7) BS01 peptide N/A GO:0008643 ... N/A 40187349
    950051 9cpf:B (1.7) BS02 GLC N/A GO:0008643 ... N/A 40187349
    950052 9cpf:B (1.7) BS03 GLC N/A GO:0008643 ... N/A 40187349
    950053 9cpf:C (1.7) BS01 peptide N/A GO:0008643 ... N/A 40187349
    950054 9cpf:C (1.7) BS02 GLC N/A GO:0008643 ... N/A 40187349
    950055 9cpf:C (1.7) BS03 GLC N/A GO:0008643 ... N/A 40187349
    950056 9cpf:D (1.7) BS01 peptide N/A GO:0008643 ... N/A 40187349
    950057 9cpf:D (1.7) BS02 GLC N/A GO:0008643 ... N/A 40187349
    950058 9cpf:D (1.7) BS03 GLC N/A GO:0008643 ... N/A 40187349
    950059 9cph:A (3.34) BS01 peptide N/A GO:0008643 ... N/A 40187349
    950060 9cph:A (3.34) BS02 GLC N/A GO:0008643 ... N/A 40187349
    950061 9cph:A (3.34) BS03 GLC N/A GO:0008643 ... N/A 40187349
    950062 9cpk:A (2.56) BS01 ADP N/A GO:0005524 ... Q6LX38 39644888
    950063 9cpk:A (2.56) BS02 AF3 N/A GO:0005524 ... Q6LX38 39644888
    950064 9cpk:B (2.56) BS01 ADP N/A GO:0005524 ... Q6LX38 39644888
    950065 9cpk:B (2.56) BS02 AF3 N/A GO:0005524 ... Q6LX38 39644888
    950066 9cpk:C (2.56) BS01 ADP N/A GO:0005524 ... Q6LX38 39644888
    950067 9cpk:C (2.56) BS02 AF3 N/A GO:0005524 ... Q6LX38 39644888
    950068 9cpk:D (2.56) BS01 ADP N/A GO:0005524 ... Q6LX38 39644888
    950069 9cpk:D (2.56) BS02 AF3 N/A GO:0005524 ... Q6LX38 39644888
    950070 9cpk:E (2.56) BS01 ADP N/A GO:0005524 ... Q6LX38 39644888
    950071 9cpk:E (2.56) BS02 AF3 N/A GO:0005524 ... Q6LX38 39644888
    950072 9cpk:F (2.56) BS01 ADP N/A GO:0005524 ... Q6LX38 39644888
    950073 9cpk:F (2.56) BS02 AF3 N/A GO:0005524 ... Q6LX38 39644888
    950074 9cpk:G (2.56) BS01 ADP N/A GO:0005524 ... Q6LX38 39644888
    950075 9cpk:G (2.56) BS02 AF3 N/A GO:0005524 ... Q6LX38 39644888
    950076 9cpk:H (2.56) BS01 ADP N/A GO:0005524 ... Q6LX38 39644888
    950077 9cpk:H (2.56) BS02 AF3 N/A GO:0005524 ... Q6LX38 39644888
    950078 9cpk:I (2.56) BS01 ADP N/A GO:0005524 ... Q6LX38 39644888
    950079 9cpk:I (2.56) BS02 AF3 N/A GO:0005524 ... Q6LX38 39644888
    950080 9cpk:J (2.56) BS01 ADP N/A GO:0005524 ... Q6LX38 39644888
    950081 9cpk:J (2.56) BS02 AF3 N/A GO:0005524 ... Q6LX38 39644888
    950082 9cpk:K (2.56) BS01 ADP N/A GO:0005524 ... Q6LX38 39644888
    950083 9cpk:K (2.56) BS02 AF3 N/A GO:0005524 ... Q6LX38 39644888
    950084 9cpk:L (2.56) BS01 ADP N/A GO:0005524 ... Q6LX38 39644888
    950085 9cpk:L (2.56) BS02 AF3 N/A GO:0005524 ... Q6LX38 39644888
    950086 9cpk:M (2.56) BS01 ADP N/A GO:0005524 ... Q6LX38 39644888
    950087 9cpk:M (2.56) BS02 AF3 N/A GO:0005524 ... Q6LX38 39644888
    950088 9cpk:N (2.56) BS01 ADP N/A GO:0005524 ... Q6LX38 39644888
    950089 9cpk:N (2.56) BS02 AF3 N/A GO:0005524 ... Q6LX38 39644888
    950090 9cpk:O (2.56) BS01 ADP N/A GO:0005524 ... Q6LX38 39644888
    950091 9cpk:O (2.56) BS02 AF3 N/A GO:0005524 ... Q6LX38 39644888
    950092 9cpk:P (2.56) BS01 ADP N/A GO:0005524 ... Q6LX38 39644888
    950093 9cpk:P (2.56) BS02 AF3 N/A GO:0005524 ... Q6LX38 39644888
    950094 9cpm:A (1.6) BS01 CU N/A GO:0005507 ... Q72HW2 39859450
    950095 9cpm:A (1.6) BS02 CU N/A GO:0005507 ... Q72HW2 39859450
    950096 9cpm:A (1.6) BS03 CU N/A GO:0005507 ... Q72HW2 39859450
    950097 9cpm:A (1.6) BS04 CU N/A GO:0005507 ... Q72HW2 39859450
    950098 9cpn:A (1.89) BS01 peptide N/A GO:0008643 ... N/A 40187349
    950099 9cpn:A (1.89) BS02 peptide N/A GO:0008643 ... N/A 40187349
    950100 9cpn:A (1.89) BS03 GLC N/A GO:0008643 ... N/A 40187349
    950101 9cpn:A (1.89) BS04 GLC N/A GO:0008643 ... N/A 40187349
    950102 9cpn:B (1.89) BS01 peptide N/A GO:0008643 ... N/A 40187349
    950103 9cpn:B (1.89) BS02 GLC N/A GO:0008643 ... N/A 40187349
    950104 9cpn:B (1.89) BS03 GLC N/A GO:0008643 ... N/A 40187349
    950105 9cpn:C (1.89) BS01 peptide N/A GO:0008643 ... N/A 40187349
    950106 9cpn:C (1.89) BS02 GLC N/A GO:0008643 ... N/A 40187349
    950107 9cpn:C (1.89) BS03 GLC N/A GO:0008643 ... N/A 40187349
    950108 9cpn:D (1.89) BS01 peptide N/A GO:0008643 ... N/A 40187349
    950109 9cpn:D (1.89) BS02 peptide N/A GO:0008643 ... N/A 40187349
    950110 9cpn:D (1.89) BS03 GLC N/A GO:0008643 ... N/A 40187349
    950111 9cpn:D (1.89) BS04 GLC N/A GO:0008643 ... N/A 40187349
    950112 9cpo:A (3.5) BS01 rna N/A GO:0003723 ... P0C6Y3 39091740
    950113 9cpo:A (3.5) BS02 rna N/A GO:0003723 ... P0C6Y3 39091740
    950114 9cpo:A (3.5) BS03 ZN N/A GO:0003723 ... P0C6Y3 39091740
    950115 9cpo:A (3.5) BS04 ZN N/A GO:0003723 ... P0C6Y3 39091740
    950116 9cpo:B (3.5) BS01 rna N/A GO:0004197 ... P0C6Y3 39091740
    950117 9cpo:B (3.5) BS02 rna N/A GO:0004197 ... P0C6Y3 39091740
    950118 9cpo:D (3.5) BS01 rna N/A GO:0004197 ... P0C6Y3 39091740
    950119 9cpo:D (3.5) BS02 rna N/A GO:0004197 ... P0C6Y3 39091740
    950120 9cpz:A (1.54) BS01 PMP N/A GO:0003824 ... Q8ZNC4 N/A
    950121 9cpz:A (1.54) BS02 A1AZK N/A GO:0003824 ... Q8ZNC4 N/A
    950122 9cpz:A (1.54) BS03 A1AZK N/A GO:0003824 ... Q8ZNC4 N/A
    950123 9cpz:B (1.54) BS01 A1AZK N/A GO:0003824 ... Q8ZNC4 N/A
    950124 9cpz:B (1.54) BS02 A1AZK N/A GO:0003824 ... Q8ZNC4 N/A
    950125 9cpz:B (1.54) BS03 PMP N/A GO:0003824 ... Q8ZNC4 N/A
    950126 9cq2:A (2.2) BS01 ACT N/A GO:0008410 ... A6LM40 39869497
    950127 9cq2:A (2.2) BS02 MG N/A GO:0008410 ... A6LM40 39869497
    950128 9cq3:A (2.8) BS01 dna N/A GO:0000723 ... P12956 40500445
    950129 9cq3:A (2.8) BS02 dna N/A GO:0000723 ... P12956 40500445
    950130 9cq3:B (2.8) BS01 dna N/A GO:0000723 ... P13010 40500445
    950131 9cq3:B (2.8) BS02 dna N/A GO:0000723 ... P13010 40500445
    950132 9cq3:F (2.8) BS01 dna N/A GO:0000012 ... P49917 40500445
    950133 9cq3:M (2.8) BS01 dna N/A GO:0000287 ... Q9NP87 40500445
    950134 9cq3:M (2.8) BS02 dna N/A GO:0000287 ... Q9NP87 40500445
    950135 9cq3:M (2.8) BS03 dna N/A GO:0000287 ... Q9NP87 40500445
    950136 9cq3:M (2.8) BS04 MG N/A GO:0000287 ... Q9NP87 40500445
    950137 9cq3:M (2.8) BS05 MG N/A GO:0000287 ... Q9NP87 40500445
    950138 9cq3:M (2.8) BS06 DZ4 N/A GO:0000287 ... Q9NP87 40500445
    950139 9cq3:a (2.8) BS01 dna N/A GO:0000723 ... P12956 40500445
    950140 9cq3:a (2.8) BS02 dna N/A GO:0000723 ... P12956 40500445
    950141 9cq3:b (2.8) BS01 dna N/A GO:0000723 ... P13010 40500445
    950142 9cq3:b (2.8) BS02 dna N/A GO:0000723 ... P13010 40500445
    950143 9cq4:A (3.27) BS01 peptide N/A N/A N/A 39747888
    950144 9cq4:A (3.27) BS02 CLR N/A N/A N/A 39747888
    950145 9cq4:B (3.27) BS01 peptide N/A N/A N/A 39747888
    950146 9cq4:Z (3.27) BS01 peptide N/A GO:0004888 ... P20963 39747888
    950147 9cq5:A (2.5) BS01 MN N/A GO:0000287 ... P00875 39094246
    950148 9cq5:A (2.5) BS02 CAP N/A GO:0000287 ... P00875 39094246
    950149 9cq5:A (2.5) BS03 CAP N/A GO:0000287 ... P00875 39094246
    950150 9cq5:B (2.5) BS01 CAP N/A GO:0000287 ... P00875 39094246
    950151 9cq5:B (2.5) BS02 MN N/A GO:0000287 ... P00875 39094246
    950152 9cq5:B (2.5) BS03 CAP N/A GO:0000287 ... P00875 39094246
    950153 9cq5:C (2.5) BS01 MN N/A GO:0000287 ... P00875 39094246
    950154 9cq5:C (2.5) BS02 CAP N/A GO:0000287 ... P00875 39094246
    950155 9cq5:D (2.5) BS01 CAP N/A GO:0000287 ... P00875 39094246
    950156 9cq5:D (2.5) BS02 MN N/A GO:0000287 ... P00875 39094246
    950157 9cq5:D (2.5) BS03 CAP N/A GO:0000287 ... P00875 39094246
    950158 9cq5:E (2.5) BS01 MN N/A GO:0000287 ... P00875 39094246
    950159 9cq5:E (2.5) BS02 CAP N/A GO:0000287 ... P00875 39094246
    950160 9cq5:E (2.5) BS03 CAP N/A GO:0000287 ... P00875 39094246
    950161 9cq5:F (2.5) BS01 CAP N/A GO:0000287 ... P00875 39094246
    950162 9cq5:F (2.5) BS02 MN N/A GO:0000287 ... P00875 39094246
    950163 9cq5:F (2.5) BS03 CAP N/A GO:0000287 ... P00875 39094246
    950164 9cq5:G (2.5) BS01 MN N/A GO:0000287 ... P00875 39094246
    950165 9cq5:G (2.5) BS02 CAP N/A GO:0000287 ... P00875 39094246
    950166 9cq5:G (2.5) BS03 CAP N/A GO:0000287 ... P00875 39094246
    950167 9cq5:H (2.5) BS01 CAP N/A GO:0000287 ... P00875 39094246
    950168 9cq5:H (2.5) BS02 MN N/A GO:0000287 ... P00875 39094246
    950169 9cq5:H (2.5) BS03 CAP N/A GO:0000287 ... P00875 39094246
    950170 9cq6:A (3.1) BS01 peptide N/A GO:0000723 ... P12956 40500445
    950171 9cq6:A (3.1) BS02 dna N/A GO:0000723 ... P12956 40500445
    950172 9cq6:A (3.1) BS03 dna N/A GO:0000723 ... P12956 40500445
    950173 9cq6:B (3.1) BS01 peptide N/A GO:0000723 ... P13010 40500445
    950174 9cq6:B (3.1) BS02 dna N/A GO:0000723 ... P13010 40500445
    950175 9cq6:B (3.1) BS03 dna N/A GO:0000723 ... P13010 40500445
    950176 9cq6:F (3.1) BS01 dna N/A GO:0000012 ... P49917 40500445
    950177 9cq6:F (3.1) BS02 dna N/A GO:0000012 ... P49917 40500445
    950178 9cq6:F (3.1) BS03 dna N/A GO:0000012 ... P49917 40500445
    950179 9cq6:F (3.1) BS04 dna N/A GO:0000012 ... P49917 40500445
    950180 9cq6:F (3.1) BS05 AMP N/A GO:0000012 ... P49917 40500445
    950181 9cq6:a (3.1) BS01 peptide N/A GO:0000723 ... P12956 40500445
    950182 9cq6:a (3.1) BS02 dna N/A GO:0000723 ... P12956 40500445
    950183 9cq6:a (3.1) BS03 dna N/A GO:0000723 ... P12956 40500445
    950184 9cq6:b (3.1) BS01 peptide N/A GO:0000723 ... P13010 40500445
    950185 9cq6:b (3.1) BS02 dna N/A GO:0000723 ... P13010 40500445
    950186 9cq6:b (3.1) BS03 dna N/A GO:0000723 ... P13010 40500445
    950187 9cqa:D (1.74) BS01 peptide N/A N/A N/A 40082629
    950188 9cqa:E (1.74) BS01 peptide N/A N/A N/A 40082629
    950189 9cqa:F (1.74) BS01 peptide N/A N/A N/A 40082629
    950190 9cqa:G (1.74) BS01 peptide N/A N/A N/A 40082629
    950191 9cqb:A (2.5) BS01 peptide N/A N/A N/A 40082629
    950192 9cqb:B (2.5) BS01 peptide N/A N/A N/A 40082629
    950193 9cqc:A (3.4) BS01 peptide N/A GO:0000723 ... P12956 40500445
    950194 9cqc:A (3.4) BS02 dna N/A GO:0000723 ... P12956 40500445
    950195 9cqc:A (3.4) BS03 dna N/A GO:0000723 ... P12956 40500445
    950196 9cqc:B (3.4) BS01 dna N/A GO:0000723 ... P13010 40500445
    950197 9cqc:B (3.4) BS02 dna N/A GO:0000723 ... P13010 40500445
    950198 9cqc:a (3.4) BS01 peptide N/A GO:0000723 ... P12956 40500445
    950199 9cqc:a (3.4) BS02 dna N/A GO:0000723 ... P12956 40500445
    950200 9cqc:a (3.4) BS03 dna N/A GO:0000723 ... P12956 40500445

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).