SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    950201 9cqc:b (3.4) BS01 peptide N/A GO:0000723 ... P13010 40500445
    950202 9cqc:b (3.4) BS02 dna N/A GO:0000723 ... P13010 40500445
    950203 9cqc:b (3.4) BS03 dna N/A GO:0000723 ... P13010 40500445
    950204 9cqc:f (3.4) BS01 dna N/A GO:0000012 ... P49917 40500445
    950205 9cqc:f (3.4) BS02 dna N/A GO:0000012 ... P49917 40500445
    950206 9cqc:f (3.4) BS03 dna N/A GO:0000012 ... P49917 40500445
    950207 9cqc:f (3.4) BS04 dna N/A GO:0000012 ... P49917 40500445
    950208 9cqd:W (3.1) BS01 peptide N/A N/A N/A 40082629
    950209 9cqd:X (3.1) BS01 peptide N/A N/A N/A 40082629
    950210 9cqd:Y (3.1) BS01 peptide N/A N/A N/A 40082629
    950211 9cqd:Z (3.1) BS01 peptide N/A N/A N/A 40082629
    950212 9cqd:j (3.1) BS01 peptide N/A GO:0055036 ... P03423 40082629
    950213 9cqk:A (1.65) BS01 ZN N/A GO:0004022 ... P00327 N/A
    950214 9cqk:A (1.65) BS02 ZN N/A GO:0004022 ... P00327 N/A
    950215 9cqk:A (1.65) BS03 NAI N/A GO:0004022 ... P00327 N/A
    950216 9cqk:A (1.65) BS04 CXF N/A GO:0004022 ... P00327 N/A
    950217 9cqk:B (1.65) BS01 ZN N/A GO:0004022 ... P00327 N/A
    950218 9cqk:B (1.65) BS02 ZN N/A GO:0004022 ... P00327 N/A
    950219 9cqk:B (1.65) BS03 NAI N/A GO:0004022 ... P00327 N/A
    950220 9cqk:B (1.65) BS04 CXF N/A GO:0004022 ... P00327 N/A
    950221 9cqm:A (2.55) BS01 HEM N/A GO:0004601 ... P69905 40229244
    950222 9cqm:A (2.55) BS02 OXY N/A GO:0004601 ... P69905 40229244
    950223 9cqm:B (2.55) BS01 HEM N/A GO:0004601 ... P68871 40229244
    950224 9cqm:B (2.55) BS02 OXY N/A GO:0004601 ... P68871 40229244
    950225 9cqm:C (2.55) BS01 HEM N/A GO:0004601 ... P69905 40229244
    950226 9cqm:D (2.55) BS01 HEM N/A GO:0004601 ... P68871 40229244
    950227 9cqm:D (2.55) BS02 OXY N/A GO:0004601 ... P68871 40229244
    950228 9cqn:A (2.37) BS01 HEM N/A GO:0004601 ... P69905 40229244
    950229 9cqn:A (2.37) BS02 OXY N/A GO:0004601 ... P69905 40229244
    950230 9cqn:B (2.37) BS01 HEM N/A GO:0004601 ... P68871 40229244
    950231 9cqn:B (2.37) BS02 OXY N/A GO:0004601 ... P68871 40229244
    950232 9cqn:C (2.37) BS01 HEM N/A GO:0004601 ... P69905 40229244
    950233 9cqn:D (2.37) BS01 HEM N/A GO:0004601 ... P68871 40229244
    950234 9cqn:D (2.37) BS02 OXY N/A GO:0004601 ... P68871 40229244
    950235 9cqo:A (3.01) BS01 HEM N/A GO:0004601 ... P69905 40229244
    950236 9cqo:B (3.01) BS01 HEM N/A GO:0004601 ... P68871 40229244
    950237 9cqo:C (3.01) BS01 HEM N/A GO:0004601 ... P69905 40229244
    950238 9cqo:D (3.01) BS01 HEM N/A GO:0004601 ... P68871 40229244
    950239 9cqp:A (2.78) BS01 HEM N/A GO:0004601 ... P69905 40229244
    950240 9cqp:B (2.78) BS01 HEM N/A GO:0004601 ... P68871 40229244
    950241 9cqp:C (2.78) BS01 HEM N/A GO:0004601 ... P69905 40229244
    950242 9cqp:D (2.78) BS01 HEM N/A GO:0004601 ... P68871 40229244
    950243 9cqq:A (2.91) BS01 HEM N/A GO:0004601 ... P69905 40229244
    950244 9cqq:B (2.91) BS01 HEM N/A GO:0004601 ... P68871 40229244
    950245 9cqq:C (2.91) BS01 HEM N/A GO:0004601 ... P69905 40229244
    950246 9cqq:D (2.91) BS01 HEM N/A GO:0004601 ... P68871 40229244
    950247 9cqr:A (2.7) BS01 HEM N/A GO:0004601 ... P69905 40229244
    950248 9cqr:B (2.7) BS01 HEM N/A GO:0004601 ... P68871 40229244
    950249 9cqr:C (2.7) BS01 HEM N/A GO:0004601 ... P69905 40229244
    950250 9cqr:D (2.7) BS01 HEM N/A GO:0004601 ... P68871 40229244
    950251 9cqs:A (2.52) BS01 HEM N/A GO:0004601 ... P69905 40229244
    950252 9cqs:A (2.52) BS02 OXY N/A GO:0004601 ... P69905 40229244
    950253 9cqs:B (2.52) BS01 HEM N/A GO:0004601 ... P68871 40229244
    950254 9cqs:C (2.52) BS01 HEM N/A GO:0004601 ... P69905 40229244
    950255 9cqs:C (2.52) BS02 OXY N/A GO:0004601 ... P69905 40229244
    950256 9cqs:D (2.52) BS01 HEM N/A GO:0004601 ... P68871 40229244
    950257 9cqt:A (2.37) BS01 HEM N/A GO:0004601 ... P69905 40229244
    950258 9cqt:A (2.37) BS02 OXY N/A GO:0004601 ... P69905 40229244
    950259 9cqt:B (2.37) BS01 HEM N/A GO:0004601 ... P68871 40229244
    950260 9cqt:B (2.37) BS02 OXY N/A GO:0004601 ... P68871 40229244
    950261 9cqt:C (2.37) BS01 HEM N/A GO:0004601 ... P69905 40229244
    950262 9cqt:C (2.37) BS02 OXY N/A GO:0004601 ... P69905 40229244
    950263 9cqt:D (2.37) BS01 HEM N/A GO:0004601 ... P68871 40229244
    950264 9cqt:D (2.37) BS02 OXY N/A GO:0004601 ... P68871 40229244
    950265 9cqu:A (2.72) BS01 HEM N/A GO:0004601 ... P69905 40229244
    950266 9cqu:B (2.72) BS01 HEM N/A GO:0004601 ... P68871 40229244
    950267 9cqu:C (2.72) BS01 HEM N/A GO:0004601 ... P69905 40229244
    950268 9cqu:D (2.72) BS01 HEM N/A GO:0004601 ... P68871 40229244
    950269 9cqv:A (2.75) BS01 HEM N/A GO:0004601 ... P69905 40229244
    950270 9cqv:B (2.75) BS01 HEM N/A GO:0004601 ... P68871 40229244
    950271 9cqv:C (2.75) BS01 HEM N/A GO:0004601 ... P69905 40229244
    950272 9cqv:D (2.75) BS01 HEM N/A GO:0004601 ... P68871 40229244
    950273 9cqw:A (2.61) BS01 HEM N/A GO:0004601 ... P69905 40229244
    950274 9cqw:B (2.61) BS01 HEM N/A GO:0004601 ... P68871 40229244
    950275 9cqw:C (2.61) BS01 HEM N/A GO:0004601 ... P69905 40229244
    950276 9cqw:D (2.61) BS01 HEM N/A GO:0004601 ... P68871 40229244
    950277 9cqx:A (2.51) BS01 ICS N/A GO:0009399 ... P07328 40229244
    950278 9cqx:A (2.51) BS02 CLF N/A GO:0009399 ... P07328 40229244
    950279 9cqx:B (2.51) BS01 FE N/A GO:0009399 ... P07329 40229244
    950280 9cqx:B (2.51) BS02 CLF N/A GO:0009399 ... P07329 40229244
    950281 9cqx:B (2.51) BS03 FE N/A GO:0009399 ... P07329 40229244
    950282 9cqx:C (2.51) BS01 ICS N/A GO:0009399 ... P07328 40229244
    950283 9cqx:C (2.51) BS02 CLF N/A GO:0009399 ... P07328 40229244
    950284 9cqx:D (2.51) BS01 FE N/A GO:0009399 ... P07329 40229244
    950285 9cqx:D (2.51) BS02 FE N/A GO:0009399 ... P07329 40229244
    950286 9cqx:D (2.51) BS03 CLF N/A GO:0009399 ... P07329 40229244
    950287 9cqy:A (2.39) BS01 ICS N/A GO:0009399 ... P07328 40229244
    950288 9cqy:A (2.39) BS02 CLF N/A GO:0009399 ... P07328 40229244
    950289 9cqy:B (2.39) BS01 FE N/A GO:0009399 ... P07329 40229244
    950290 9cqy:B (2.39) BS02 CLF N/A GO:0009399 ... P07329 40229244
    950291 9cqy:B (2.39) BS03 FE N/A GO:0009399 ... P07329 40229244
    950292 9cqy:C (2.39) BS01 ICS N/A GO:0009399 ... P07328 40229244
    950293 9cqy:C (2.39) BS02 CLF N/A GO:0009399 ... P07328 40229244
    950294 9cqy:D (2.39) BS01 FE N/A GO:0009399 ... P07329 40229244
    950295 9cqy:D (2.39) BS02 FE N/A GO:0009399 ... P07329 40229244
    950296 9cqy:D (2.39) BS03 CLF N/A GO:0009399 ... P07329 40229244
    950297 9cqz:A (2.19) BS01 ICS N/A GO:0009399 ... P07328 40229244
    950298 9cqz:A (2.19) BS02 CLF N/A GO:0009399 ... P07328 40229244
    950299 9cqz:B (2.19) BS01 FE N/A GO:0009399 ... P07329 40229244
    950300 9cqz:B (2.19) BS02 CLF N/A GO:0009399 ... P07329 40229244
    950301 9cqz:B (2.19) BS03 FE N/A GO:0009399 ... P07329 40229244
    950302 9cqz:C (2.19) BS01 ICS N/A GO:0009399 ... P07328 40229244
    950303 9cqz:C (2.19) BS02 CLF N/A GO:0009399 ... P07328 40229244
    950304 9cqz:D (2.19) BS01 FE N/A GO:0009399 ... P07329 40229244
    950305 9cqz:D (2.19) BS02 FE N/A GO:0009399 ... P07329 40229244
    950306 9cqz:D (2.19) BS03 CLF N/A GO:0009399 ... P07329 40229244
    950307 9cr0:A (2.08) BS01 ICS N/A GO:0009399 ... P07328 40229244
    950308 9cr0:A (2.08) BS02 CLF N/A GO:0009399 ... P07328 40229244
    950309 9cr0:B (2.08) BS01 FE N/A GO:0009399 ... P07329 40229244
    950310 9cr0:B (2.08) BS02 CLF N/A GO:0009399 ... P07329 40229244
    950311 9cr0:B (2.08) BS03 FE N/A GO:0009399 ... P07329 40229244
    950312 9cr0:C (2.08) BS01 ICS N/A GO:0009399 ... P07328 40229244
    950313 9cr0:C (2.08) BS02 CLF N/A GO:0009399 ... P07328 40229244
    950314 9cr0:D (2.08) BS01 FE N/A GO:0009399 ... P07329 40229244
    950315 9cr0:D (2.08) BS02 FE N/A GO:0009399 ... P07329 40229244
    950316 9cr0:D (2.08) BS03 CLF N/A GO:0009399 ... P07329 40229244
    950317 9cr5:A (1.56) BS01 ACO N/A GO:0016747 ... Q9I1K2 39826527
    950318 9cr5:B (1.56) BS01 ACO N/A GO:0016747 ... Q9I1K2 39826527
    950319 9cr7:A (2.05) BS01 H81 N/A GO:0042799 ... Q9NQR1 N/A
    950320 9cr7:B (2.05) BS01 E1J N/A GO:0042799 ... Q9NQR1 N/A
    950321 9cr9:A (1.8) BS01 peptide N/A N/A N/A 40719751
    950322 9cr9:B (1.8) BS01 peptide N/A N/A N/A 40719751
    950323 9cr9:H (1.8) BS01 peptide N/A N/A N/A 40719751
    950324 9cr9:L (1.8) BS01 peptide N/A N/A N/A 40719751
    950325 9cra:A (2.34) BS01 NAD N/A GO:0006741 ... O95544 39854463
    950326 9cra:A (2.34) BS02 NAD N/A GO:0006741 ... O95544 39854463
    950327 9cra:B (2.34) BS01 NAD N/A GO:0006741 ... O95544 39854463
    950328 9cra:B (2.34) BS02 NAD N/A GO:0006741 ... O95544 39854463
    950329 9cra:C (2.34) BS01 NAD N/A GO:0006741 ... O95544 39854463
    950330 9cra:C (2.34) BS02 NAD N/A GO:0006741 ... O95544 39854463
    950331 9cra:D (2.34) BS01 NAD N/A GO:0006741 ... O95544 39854463
    950332 9cra:D (2.34) BS02 NAD N/A GO:0006741 ... O95544 39854463
    950333 9crd:B (3.5) BS01 FUC N/A GO:0016020 ... P0DTC2 39543395
    950334 9crg:A (3.3) BS01 FUC N/A GO:0016020 ... P0DTC2 39543395
    950335 9cro:A (3.5) BS01 rna N/A N/A Q97Y91 N/A
    950336 9cro:B (3.5) BS01 rna N/A N/A Q97Y91 N/A
    950337 9cro:C (3.5) BS01 rna N/A N/A Q97Y91 N/A
    950338 9cro:D (3.5) BS01 rna N/A N/A Q97Y91 N/A
    950339 9cro:E (3.5) BS01 rna N/A N/A Q97Y91 N/A
    950340 9cro:F (3.5) BS01 rna N/A N/A Q97Y91 N/A
    950341 9cro:G (3.5) BS01 rna N/A N/A Q97Y91 N/A
    950342 9cro:H (3.5) BS01 rna N/A N/A Q97Y92 N/A
    950343 9crp:A (3.2) BS01 dna N/A N/A Q97Y91 N/A
    950344 9crp:A (3.2) BS02 rna N/A N/A Q97Y91 N/A
    950345 9crp:B (3.2) BS01 rna N/A N/A Q97Y91 N/A
    950346 9crp:C (3.2) BS01 dna N/A N/A Q97Y91 N/A
    950347 9crp:C (3.2) BS02 rna N/A N/A Q97Y91 N/A
    950348 9crp:D (3.2) BS01 dna N/A N/A Q97Y91 N/A
    950349 9crp:D (3.2) BS02 rna N/A N/A Q97Y91 N/A
    950350 9crp:E (3.2) BS01 dna N/A N/A Q97Y91 N/A
    950351 9crp:E (3.2) BS02 rna N/A N/A Q97Y91 N/A
    950352 9crp:F (3.2) BS01 rna N/A N/A Q97Y91 N/A
    950353 9crp:G (3.2) BS01 rna N/A N/A Q97Y92 N/A
    950354 9crq:A (3.07) BS01 rna N/A N/A Q97Y91 N/A
    950355 9crq:B (3.07) BS01 dna N/A N/A Q97Y91 N/A
    950356 9crq:B (3.07) BS02 rna N/A N/A Q97Y91 N/A
    950357 9crq:C (3.07) BS01 dna N/A N/A Q97Y91 N/A
    950358 9crq:C (3.07) BS02 rna N/A N/A Q97Y91 N/A
    950359 9crq:D (3.07) BS01 dna N/A N/A Q97Y91 N/A
    950360 9crq:D (3.07) BS02 rna N/A N/A Q97Y91 N/A
    950361 9crq:E (3.07) BS01 rna N/A N/A Q97Y91 N/A
    950362 9crq:G (3.07) BS01 rna N/A N/A Q97Y92 N/A
    950363 9crs:A (2.9) BS01 ABU N/A GO:0004888 ... P47870 39843743
    950364 9crs:B (2.9) BS01 ABU N/A GO:0004888 ... P14867 39843743
    950365 9crs:B (2.9) BS02 PIO N/A GO:0004888 ... P14867 39843743
    950366 9crs:C (2.9) BS01 ABU N/A GO:0004888 ... P47870 39843743
    950367 9crs:D (2.9) BS01 ABU N/A GO:0004888 ... P14867 39843743
    950368 9crs:D (2.9) BS02 PIO N/A GO:0004888 ... P14867 39843743
    950369 9crs:E (2.9) BS01 MAN N/A GO:0004888 ... P18507 39843743
    950370 9crs:E (2.9) BS02 MAN N/A GO:0004888 ... P18507 39843743
    950371 9crt:A (2.19) BS01 BMA N/A N/A P0DOX5 N/A
    950372 9crt:A (2.19) BS02 GAL N/A N/A P0DOX5 N/A
    950373 9crt:A (2.19) BS03 FUC N/A N/A P0DOX5 N/A
    950374 9crt:B (2.19) BS01 BMA N/A N/A P0DOX5 N/A
    950375 9crt:B (2.19) BS02 MAN N/A N/A P0DOX5 N/A
    950376 9cru:A (3.89) BS01 ADP N/A GO:0000045 ... P18759 40604310
    950377 9cru:A (3.89) BS02 ATP N/A GO:0000045 ... P18759 40604310
    950378 9cru:B (3.89) BS01 ATP N/A GO:0000045 ... P18759 40604310
    950379 9cru:B (3.89) BS02 ATP N/A GO:0000045 ... P18759 40604310
    950380 9cru:B (3.89) BS03 ATP N/A GO:0000045 ... P18759 40604310
    950381 9cru:C (3.89) BS01 ATP N/A GO:0000045 ... P18759 40604310
    950382 9cru:C (3.89) BS02 ATP N/A GO:0000045 ... P18759 40604310
    950383 9cru:D (3.89) BS01 ATP N/A GO:0000045 ... P18759 40604310
    950384 9cru:D (3.89) BS02 ATP N/A GO:0000045 ... P18759 40604310
    950385 9cru:E (3.89) BS01 ADP N/A GO:0000045 ... P18759 40604310
    950386 9cru:E (3.89) BS02 ATP N/A GO:0000045 ... P18759 40604310
    950387 9cru:F (3.89) BS01 ATP N/A GO:0000045 ... P18759 40604310
    950388 9crv:A (3.18) BS01 ABU N/A GO:0004888 ... P47870 39843743
    950389 9crv:B (3.18) BS01 ABU N/A GO:0004888 ... P14867 39843743
    950390 9crv:B (3.18) BS02 PIO N/A GO:0004888 ... P14867 39843743
    950391 9crv:C (3.18) BS01 MAN N/A GO:0004888 ... P18507 39843743
    950392 9crv:D (3.18) BS01 ABU N/A GO:0004888 ... P47870 39843743
    950393 9crv:E (3.18) BS01 PIO N/A GO:0004888 ... P47869 39843743
    950394 9crx:A (3.73) BS01 ADP N/A GO:0000045 ... P18759 40604310
    950395 9crx:A (3.73) BS02 ATP N/A GO:0000045 ... P18759 40604310
    950396 9crx:B (3.73) BS01 ATP N/A GO:0000045 ... P18759 40604310
    950397 9crx:B (3.73) BS02 ATP N/A GO:0000045 ... P18759 40604310
    950398 9crx:B (3.73) BS03 ATP N/A GO:0000045 ... P18759 40604310
    950399 9crx:C (3.73) BS01 ATP N/A GO:0000045 ... P18759 40604310
    950400 9crx:C (3.73) BS02 ATP N/A GO:0000045 ... P18759 40604310

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).