SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    952001 9d0g:1d (2.5) BS01 rna N/A GO:0003723 ... P80373 40787583
    952002 9d0g:1d (2.5) BS02 SF4 N/A GO:0003723 ... P80373 40787583
    952003 9d0g:1e (2.5) BS01 rna N/A GO:0003723 ... Q5SHQ5 40787583
    952004 9d0g:1e (2.5) BS02 MG N/A GO:0003723 ... Q5SHQ5 40787583
    952005 9d0g:1e (2.5) BS03 MG N/A GO:0003723 ... Q5SHQ5 40787583
    952006 9d0g:1f (2.5) BS01 rna N/A GO:0003735 ... Q5SLP8 40787583
    952007 9d0g:1g (2.5) BS01 rna N/A GO:0000049 ... P17291 40787583
    952008 9d0g:1g (2.5) BS02 rna N/A GO:0000049 ... P17291 40787583
    952009 9d0g:1h (2.5) BS01 rna N/A GO:0003735 ... P0DOY9 40787583
    952010 9d0g:1h (2.5) BS02 MG N/A GO:0003735 ... P0DOY9 40787583
    952011 9d0g:1i (2.5) BS01 rna N/A GO:0003723 ... P80374 40787583
    952012 9d0g:1i (2.5) BS02 rna N/A GO:0003723 ... P80374 40787583
    952013 9d0g:1j (2.5) BS01 rna N/A GO:0000049 ... Q5SHN7 40787583
    952014 9d0g:1k (2.5) BS01 rna N/A GO:0003735 ... P80376 40787583
    952015 9d0g:1k (2.5) BS02 MG N/A GO:0003735 ... P80376 40787583
    952016 9d0g:1l (2.5) BS01 rna N/A GO:0000049 ... Q5SHN3 40787583
    952017 9d0g:1l (2.5) BS02 MG N/A GO:0000049 ... Q5SHN3 40787583
    952018 9d0g:1m (2.5) BS01 rna N/A GO:0000049 ... P80377 40787583
    952019 9d0g:1m (2.5) BS02 rna N/A GO:0000049 ... P80377 40787583
    952020 9d0g:1m (2.5) BS03 rna N/A GO:0000049 ... P80377 40787583
    952021 9d0g:1m (2.5) BS04 rna N/A GO:0000049 ... P80377 40787583
    952022 9d0g:1m (2.5) BS05 MG N/A GO:0000049 ... P80377 40787583
    952023 9d0g:1n (2.5) BS01 rna N/A GO:0003735 ... P0DOY6 40787583
    952024 9d0g:1n (2.5) BS02 ZN N/A GO:0003735 ... P0DOY6 40787583
    952025 9d0g:1o (2.5) BS01 rna N/A GO:0003735 ... Q5SJ76 40787583
    952026 9d0g:1o (2.5) BS02 rna N/A GO:0003735 ... Q5SJ76 40787583
    952027 9d0g:1p (2.5) BS01 rna N/A GO:0003735 ... Q5SJH3 40787583
    952028 9d0g:1q (2.5) BS01 rna N/A GO:0003735 ... P0DOY7 40787583
    952029 9d0g:1r (2.5) BS01 rna N/A GO:0003735 ... Q5SLQ0 40787583
    952030 9d0g:1s (2.5) BS01 rna N/A GO:0000028 ... Q5SHP2 40787583
    952031 9d0g:1t (2.5) BS01 rna N/A GO:0003723 ... P80380 40787583
    952032 9d0g:20 (2.5) BS01 rna N/A GO:0003735 ... P60493 40787583
    952033 9d0g:20 (2.5) BS02 rna N/A GO:0003735 ... P60493 40787583
    952034 9d0g:20 (2.5) BS03 rna N/A GO:0003735 ... P60493 40787583
    952035 9d0g:21 (2.5) BS01 rna N/A GO:0003735 ... P60494 40787583
    952036 9d0g:21 (2.5) BS02 rna N/A GO:0003735 ... P60494 40787583
    952037 9d0g:21 (2.5) BS03 MG N/A GO:0003735 ... P60494 40787583
    952038 9d0g:22 (2.5) BS01 rna N/A GO:0003735 ... Q5SHP6 40787583
    952039 9d0g:23 (2.5) BS01 rna N/A GO:0003735 ... Q5SHQ6 40787583
    952040 9d0g:23 (2.5) BS02 rna N/A GO:0003735 ... Q5SHQ6 40787583
    952041 9d0g:23 (2.5) BS03 MG N/A GO:0003735 ... Q5SHQ6 40787583
    952042 9d0g:24 (2.5) BS01 rna N/A GO:0003735 ... Q5SJE1 40787583
    952043 9d0g:24 (2.5) BS02 ZN N/A GO:0003735 ... Q5SJE1 40787583
    952044 9d0g:25 (2.5) BS01 rna N/A GO:0003735 ... P80339 40787583
    952045 9d0g:25 (2.5) BS02 MG N/A GO:0003735 ... P80339 40787583
    952046 9d0g:25 (2.5) BS03 ZN N/A GO:0003735 ... P80339 40787583
    952047 9d0g:26 (2.5) BS01 rna N/A GO:0003735 ... P35871 40787583
    952048 9d0g:26 (2.5) BS02 ZN N/A GO:0003735 ... P35871 40787583
    952049 9d0g:27 (2.5) BS01 rna N/A GO:0003735 ... P80340 40787583
    952050 9d0g:27 (2.5) BS02 MG N/A GO:0003735 ... P80340 40787583
    952051 9d0g:27 (2.5) BS03 MG N/A GO:0003735 ... P80340 40787583
    952052 9d0g:28 (2.5) BS01 rna N/A GO:0003735 ... Q5SKU1 40787583
    952053 9d0g:29 (2.5) BS01 rna N/A GO:0003735 ... Q5SHR2 40787583
    952054 9d0g:29 (2.5) BS02 MG N/A GO:0003735 ... Q5SHR2 40787583
    952055 9d0g:29 (2.5) BS03 ZN N/A GO:0003735 ... Q5SHR2 40787583
    952056 9d0g:2D (2.5) BS01 rna N/A GO:0002181 ... P60405 40787583
    952057 9d0g:2D (2.5) BS02 rna N/A GO:0002181 ... P60405 40787583
    952058 9d0g:2D (2.5) BS03 MG N/A GO:0002181 ... P60405 40787583
    952059 9d0g:2D (2.5) BS04 MG N/A GO:0002181 ... P60405 40787583
    952060 9d0g:2D (2.5) BS05 MG N/A GO:0002181 ... P60405 40787583
    952061 9d0g:2D (2.5) BS06 MG N/A GO:0002181 ... P60405 40787583
    952062 9d0g:2D (2.5) BS07 MG N/A GO:0002181 ... P60405 40787583
    952063 9d0g:2E (2.5) BS01 rna N/A GO:0003735 ... Q5SHN8 40787583
    952064 9d0g:2E (2.5) BS02 MG N/A GO:0003735 ... Q5SHN8 40787583
    952065 9d0g:2F (2.5) BS01 rna N/A GO:0003735 ... Q5SHN9 40787583
    952066 9d0g:2F (2.5) BS02 MG N/A GO:0003735 ... Q5SHN9 40787583
    952067 9d0g:2F (2.5) BS03 MG N/A GO:0003735 ... Q5SHN9 40787583
    952068 9d0g:2F (2.5) BS04 MG N/A GO:0003735 ... Q5SHN9 40787583
    952069 9d0g:2F (2.5) BS05 MG N/A GO:0003735 ... Q5SHN9 40787583
    952070 9d0g:2G (2.5) BS01 rna N/A GO:0000049 ... Q5SHQ0 40787583
    952071 9d0g:2G (2.5) BS02 rna N/A GO:0000049 ... Q5SHQ0 40787583
    952072 9d0g:2G (2.5) BS03 rna N/A GO:0000049 ... Q5SHQ0 40787583
    952073 9d0g:2H (2.5) BS01 rna N/A GO:0002181 ... P0DOY8 40787583
    952074 9d0g:2I (2.5) BS01 rna N/A GO:0003735 ... Q5SLQ1 40787583
    952075 9d0g:2N (2.5) BS01 rna N/A GO:0003729 ... P60488 40787583
    952076 9d0g:2O (2.5) BS01 rna N/A GO:0003735 ... Q5SHP8 40787583
    952077 9d0g:2O (2.5) BS02 rna N/A GO:0003735 ... Q5SHP8 40787583
    952078 9d0g:2P (2.5) BS01 rna N/A GO:0003735 ... Q5SHQ7 40787583
    952079 9d0g:2Q (2.5) BS01 rna N/A GO:0003735 ... P60489 40787583
    952080 9d0g:2Q (2.5) BS02 rna N/A GO:0003735 ... P60489 40787583
    952081 9d0g:2Q (2.5) BS03 rna N/A GO:0003735 ... P60489 40787583
    952082 9d0g:2Q (2.5) BS04 MG N/A GO:0003735 ... P60489 40787583
    952083 9d0g:2Q (2.5) BS05 MG N/A GO:0003735 ... P60489 40787583
    952084 9d0g:2Q (2.5) BS06 MG N/A GO:0003735 ... P60489 40787583
    952085 9d0g:2R (2.5) BS01 rna N/A GO:0003735 ... Q9Z9H5 40787583
    952086 9d0g:2S (2.5) BS01 rna N/A GO:0003735 ... Q5SHQ4 40787583
    952087 9d0g:2S (2.5) BS02 rna N/A GO:0003735 ... Q5SHQ4 40787583
    952088 9d0g:2T (2.5) BS01 rna N/A GO:0003735 ... P60490 40787583
    952089 9d0g:2T (2.5) BS02 rna N/A GO:0003735 ... P60490 40787583
    952090 9d0g:2U (2.5) BS01 rna N/A GO:0000027 ... P60491 40787583
    952091 9d0g:2U (2.5) BS02 MG N/A GO:0000027 ... P60491 40787583
    952092 9d0g:2V (2.5) BS01 rna N/A GO:0003723 ... P60492 40787583
    952093 9d0g:2V (2.5) BS02 MG N/A GO:0003723 ... P60492 40787583
    952094 9d0g:2W (2.5) BS01 rna N/A GO:0003735 ... Q5SHP3 40787583
    952095 9d0g:2W (2.5) BS02 MG N/A GO:0003735 ... Q5SHP3 40787583
    952096 9d0g:2W (2.5) BS03 MG N/A GO:0003735 ... Q5SHP3 40787583
    952097 9d0g:2X (2.5) BS01 rna N/A GO:0003735 ... Q5SHP0 40787583
    952098 9d0g:2X (2.5) BS02 MG N/A GO:0003735 ... Q5SHP0 40787583
    952099 9d0g:2Y (2.5) BS01 rna N/A GO:0003723 ... Q5SHP9 40787583
    952100 9d0g:2Y (2.5) BS02 ZN N/A GO:0003723 ... Q5SHP9 40787583
    952101 9d0g:2Z (2.5) BS01 rna N/A GO:0003723 ... Q5SHZ1 40787583
    952102 9d0g:2Z (2.5) BS02 MG N/A GO:0003723 ... Q5SHZ1 40787583
    952103 9d0g:2b (2.5) BS01 rna N/A GO:0003735 ... P80371 40787583
    952104 9d0g:2c (2.5) BS01 rna N/A GO:0003676 ... P80372 40787583
    952105 9d0g:2d (2.5) BS01 rna N/A GO:0003723 ... P80373 40787583
    952106 9d0g:2d (2.5) BS02 SF4 N/A GO:0003723 ... P80373 40787583
    952107 9d0g:2e (2.5) BS01 rna N/A GO:0003723 ... Q5SHQ5 40787583
    952108 9d0g:2e (2.5) BS02 MG N/A GO:0003723 ... Q5SHQ5 40787583
    952109 9d0g:2f (2.5) BS01 rna N/A GO:0003735 ... Q5SLP8 40787583
    952110 9d0g:2f (2.5) BS02 MG N/A GO:0003735 ... Q5SLP8 40787583
    952111 9d0g:2g (2.5) BS01 rna N/A GO:0000049 ... P17291 40787583
    952112 9d0g:2g (2.5) BS02 rna N/A GO:0000049 ... P17291 40787583
    952113 9d0g:2h (2.5) BS01 rna N/A GO:0003735 ... P0DOY9 40787583
    952114 9d0g:2i (2.5) BS01 rna N/A GO:0003723 ... P80374 40787583
    952115 9d0g:2i (2.5) BS02 rna N/A GO:0003723 ... P80374 40787583
    952116 9d0g:2j (2.5) BS01 rna N/A GO:0000049 ... Q5SHN7 40787583
    952117 9d0g:2k (2.5) BS01 rna N/A GO:0003735 ... P80376 40787583
    952118 9d0g:2k (2.5) BS02 MG N/A GO:0003735 ... P80376 40787583
    952119 9d0g:2l (2.5) BS01 rna N/A GO:0000049 ... Q5SHN3 40787583
    952120 9d0g:2l (2.5) BS02 MG N/A GO:0000049 ... Q5SHN3 40787583
    952121 9d0g:2l (2.5) BS03 MG N/A GO:0000049 ... Q5SHN3 40787583
    952122 9d0g:2l (2.5) BS04 MG N/A GO:0000049 ... Q5SHN3 40787583
    952123 9d0g:2m (2.5) BS01 rna N/A GO:0000049 ... P80377 40787583
    952124 9d0g:2m (2.5) BS02 rna N/A GO:0000049 ... P80377 40787583
    952125 9d0g:2m (2.5) BS03 rna N/A GO:0000049 ... P80377 40787583
    952126 9d0g:2n (2.5) BS01 rna N/A GO:0003735 ... P0DOY6 40787583
    952127 9d0g:2n (2.5) BS02 ZN N/A GO:0003735 ... P0DOY6 40787583
    952128 9d0g:2o (2.5) BS01 rna N/A GO:0003735 ... Q5SJ76 40787583
    952129 9d0g:2o (2.5) BS02 rna N/A GO:0003735 ... Q5SJ76 40787583
    952130 9d0g:2p (2.5) BS01 rna N/A GO:0003735 ... Q5SJH3 40787583
    952131 9d0g:2q (2.5) BS01 rna N/A GO:0003735 ... P0DOY7 40787583
    952132 9d0g:2q (2.5) BS02 MG N/A GO:0003735 ... P0DOY7 40787583
    952133 9d0g:2r (2.5) BS01 rna N/A GO:0003735 ... Q5SLQ0 40787583
    952134 9d0g:2r (2.5) BS02 MG N/A GO:0003735 ... Q5SLQ0 40787583
    952135 9d0g:2s (2.5) BS01 rna N/A GO:0000028 ... Q5SHP2 40787583
    952136 9d0g:2t (2.5) BS01 rna N/A GO:0003723 ... P80380 40787583
    952137 9d0g:2t (2.5) BS02 MG N/A GO:0003723 ... P80380 40787583
    952138 9d0h:10 (2.5) BS01 rna N/A GO:0003735 ... P60493 40787583
    952139 9d0h:10 (2.5) BS02 rna N/A GO:0003735 ... P60493 40787583
    952140 9d0h:10 (2.5) BS03 rna N/A GO:0003735 ... P60493 40787583
    952141 9d0h:10 (2.5) BS04 MG N/A GO:0003735 ... P60493 40787583
    952142 9d0h:10 (2.5) BS05 MG N/A GO:0003735 ... P60493 40787583
    952143 9d0h:10 (2.5) BS06 MG N/A GO:0003735 ... P60493 40787583
    952144 9d0h:11 (2.5) BS01 rna N/A GO:0003735 ... P60494 40787583
    952145 9d0h:11 (2.5) BS02 MG N/A GO:0003735 ... P60494 40787583
    952146 9d0h:12 (2.5) BS01 rna N/A GO:0003735 ... Q5SHP6 40787583
    952147 9d0h:12 (2.5) BS02 MG N/A GO:0003735 ... Q5SHP6 40787583
    952148 9d0h:12 (2.5) BS03 MG N/A GO:0003735 ... Q5SHP6 40787583
    952149 9d0h:13 (2.5) BS01 rna N/A GO:0003735 ... Q5SHQ6 40787583
    952150 9d0h:13 (2.5) BS02 rna N/A GO:0003735 ... Q5SHQ6 40787583
    952151 9d0h:13 (2.5) BS03 MG N/A GO:0003735 ... Q5SHQ6 40787583
    952152 9d0h:13 (2.5) BS04 MG N/A GO:0003735 ... Q5SHQ6 40787583
    952153 9d0h:13 (2.5) BS05 MG N/A GO:0003735 ... Q5SHQ6 40787583
    952154 9d0h:14 (2.5) BS01 rna N/A GO:0003735 ... Q5SJE1 40787583
    952155 9d0h:14 (2.5) BS02 ZN N/A GO:0003735 ... Q5SJE1 40787583
    952156 9d0h:15 (2.5) BS01 rna N/A GO:0003735 ... P80339 40787583
    952157 9d0h:15 (2.5) BS02 MG N/A GO:0003735 ... P80339 40787583
    952158 9d0h:15 (2.5) BS03 MG N/A GO:0003735 ... P80339 40787583
    952159 9d0h:15 (2.5) BS04 MG N/A GO:0003735 ... P80339 40787583
    952160 9d0h:15 (2.5) BS05 ZN N/A GO:0003735 ... P80339 40787583
    952161 9d0h:16 (2.5) BS01 rna N/A GO:0003735 ... P35871 40787583
    952162 9d0h:16 (2.5) BS02 MG N/A GO:0003735 ... P35871 40787583
    952163 9d0h:16 (2.5) BS03 ZN N/A GO:0003735 ... P35871 40787583
    952164 9d0h:17 (2.5) BS01 rna N/A GO:0003735 ... P80340 40787583
    952165 9d0h:17 (2.5) BS02 MG N/A GO:0003735 ... P80340 40787583
    952166 9d0h:17 (2.5) BS03 MG N/A GO:0003735 ... P80340 40787583
    952167 9d0h:17 (2.5) BS04 MG N/A GO:0003735 ... P80340 40787583
    952168 9d0h:18 (2.5) BS01 rna N/A GO:0003735 ... Q5SKU1 40787583
    952169 9d0h:18 (2.5) BS02 MG N/A GO:0003735 ... Q5SKU1 40787583
    952170 9d0h:18 (2.5) BS03 MG N/A GO:0003735 ... Q5SKU1 40787583
    952171 9d0h:18 (2.5) BS04 MG N/A GO:0003735 ... Q5SKU1 40787583
    952172 9d0h:19 (2.5) BS01 rna N/A GO:0003735 ... Q5SHR2 40787583
    952173 9d0h:19 (2.5) BS02 ZN N/A GO:0003735 ... Q5SHR2 40787583
    952174 9d0h:1D (2.5) BS01 rna N/A GO:0002181 ... P60405 40787583
    952175 9d0h:1D (2.5) BS02 rna N/A GO:0002181 ... P60405 40787583
    952176 9d0h:1D (2.5) BS03 MG N/A GO:0002181 ... P60405 40787583
    952177 9d0h:1D (2.5) BS04 MG N/A GO:0002181 ... P60405 40787583
    952178 9d0h:1D (2.5) BS05 MG N/A GO:0002181 ... P60405 40787583
    952179 9d0h:1D (2.5) BS06 MG N/A GO:0002181 ... P60405 40787583
    952180 9d0h:1D (2.5) BS07 MG N/A GO:0002181 ... P60405 40787583
    952181 9d0h:1D (2.5) BS08 MG N/A GO:0002181 ... P60405 40787583
    952182 9d0h:1D (2.5) BS09 MG N/A GO:0002181 ... P60405 40787583
    952183 9d0h:1D (2.5) BS10 MG N/A GO:0002181 ... P60405 40787583
    952184 9d0h:1D (2.5) BS11 MG N/A GO:0002181 ... P60405 40787583
    952185 9d0h:1D (2.5) BS12 MG N/A GO:0002181 ... P60405 40787583
    952186 9d0h:1D (2.5) BS13 MG N/A GO:0002181 ... P60405 40787583
    952187 9d0h:1E (2.5) BS01 rna N/A GO:0003735 ... Q5SHN8 40787583
    952188 9d0h:1E (2.5) BS02 MG N/A GO:0003735 ... Q5SHN8 40787583
    952189 9d0h:1E (2.5) BS03 MG N/A GO:0003735 ... Q5SHN8 40787583
    952190 9d0h:1E (2.5) BS04 MG N/A GO:0003735 ... Q5SHN8 40787583
    952191 9d0h:1F (2.5) BS01 rna N/A GO:0003735 ... Q5SHN9 40787583
    952192 9d0h:1F (2.5) BS02 MG N/A GO:0003735 ... Q5SHN9 40787583
    952193 9d0h:1F (2.5) BS03 MG N/A GO:0003735 ... Q5SHN9 40787583
    952194 9d0h:1F (2.5) BS04 MG N/A GO:0003735 ... Q5SHN9 40787583
    952195 9d0h:1F (2.5) BS05 MG N/A GO:0003735 ... Q5SHN9 40787583
    952196 9d0h:1F (2.5) BS06 MG N/A GO:0003735 ... Q5SHN9 40787583
    952197 9d0h:1F (2.5) BS07 MG N/A GO:0003735 ... Q5SHN9 40787583
    952198 9d0h:1F (2.5) BS08 MG N/A GO:0003735 ... Q5SHN9 40787583
    952199 9d0h:1F (2.5) BS09 MG N/A GO:0003735 ... Q5SHN9 40787583
    952200 9d0h:1G (2.5) BS01 rna N/A GO:0000049 ... Q5SHQ0 40787583

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).