SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    952801 9d0j:1Z (2.5) BS02 rna N/A GO:0003723 ... Q5SHZ1 40055575
    952802 9d0j:1b (2.5) BS01 rna N/A GO:0003735 ... P80371 40055575
    952803 9d0j:1c (2.5) BS01 rna N/A GO:0003676 ... P80372 40055575
    952804 9d0j:1d (2.5) BS01 rna N/A GO:0003723 ... P80373 40055575
    952805 9d0j:1d (2.5) BS02 SF4 N/A GO:0003723 ... P80373 40055575
    952806 9d0j:1e (2.5) BS01 rna N/A GO:0003723 ... Q5SHQ5 40055575
    952807 9d0j:1e (2.5) BS02 MG N/A GO:0003723 ... Q5SHQ5 40055575
    952808 9d0j:1f (2.5) BS01 rna N/A GO:0003735 ... Q5SLP8 40055575
    952809 9d0j:1g (2.5) BS01 rna N/A GO:0000049 ... P17291 40055575
    952810 9d0j:1g (2.5) BS02 rna N/A GO:0000049 ... P17291 40055575
    952811 9d0j:1h (2.5) BS01 rna N/A GO:0003735 ... P0DOY9 40055575
    952812 9d0j:1i (2.5) BS01 rna N/A GO:0003723 ... P80374 40055575
    952813 9d0j:1j (2.5) BS01 rna N/A GO:0000049 ... Q5SHN7 40055575
    952814 9d0j:1k (2.5) BS01 rna N/A GO:0003735 ... P80376 40055575
    952815 9d0j:1k (2.5) BS02 MG N/A GO:0003735 ... P80376 40055575
    952816 9d0j:1l (2.5) BS01 rna N/A GO:0000049 ... Q5SHN3 40055575
    952817 9d0j:1l (2.5) BS02 MG N/A GO:0000049 ... Q5SHN3 40055575
    952818 9d0j:1m (2.5) BS01 rna N/A GO:0000049 ... P80377 40055575
    952819 9d0j:1m (2.5) BS02 rna N/A GO:0000049 ... P80377 40055575
    952820 9d0j:1m (2.5) BS03 rna N/A GO:0000049 ... P80377 40055575
    952821 9d0j:1m (2.5) BS04 MG N/A GO:0000049 ... P80377 40055575
    952822 9d0j:1n (2.5) BS01 rna N/A GO:0003735 ... P0DOY6 40055575
    952823 9d0j:1n (2.5) BS02 ZN N/A GO:0003735 ... P0DOY6 40055575
    952824 9d0j:1o (2.5) BS01 rna N/A GO:0003735 ... Q5SJ76 40055575
    952825 9d0j:1o (2.5) BS02 rna N/A GO:0003735 ... Q5SJ76 40055575
    952826 9d0j:1p (2.5) BS01 rna N/A GO:0003735 ... Q5SJH3 40055575
    952827 9d0j:1q (2.5) BS01 rna N/A GO:0003735 ... P0DOY7 40055575
    952828 9d0j:1r (2.5) BS01 rna N/A GO:0003735 ... Q5SLQ0 40055575
    952829 9d0j:1s (2.5) BS01 rna N/A GO:0000028 ... Q5SHP2 40055575
    952830 9d0j:1t (2.5) BS01 rna N/A GO:0003723 ... P80380 40055575
    952831 9d0j:20 (2.5) BS01 rna N/A GO:0003735 ... P60493 40055575
    952832 9d0j:20 (2.5) BS02 rna N/A GO:0003735 ... P60493 40055575
    952833 9d0j:21 (2.5) BS01 rna N/A GO:0003735 ... P60494 40055575
    952834 9d0j:21 (2.5) BS02 MG N/A GO:0003735 ... P60494 40055575
    952835 9d0j:22 (2.5) BS01 rna N/A GO:0003735 ... Q5SHP6 40055575
    952836 9d0j:23 (2.5) BS01 rna N/A GO:0003735 ... Q5SHQ6 40055575
    952837 9d0j:23 (2.5) BS02 rna N/A GO:0003735 ... Q5SHQ6 40055575
    952838 9d0j:23 (2.5) BS03 MG N/A GO:0003735 ... Q5SHQ6 40055575
    952839 9d0j:24 (2.5) BS01 rna N/A GO:0003735 ... Q5SJE1 40055575
    952840 9d0j:24 (2.5) BS02 ZN N/A GO:0003735 ... Q5SJE1 40055575
    952841 9d0j:25 (2.5) BS01 rna N/A GO:0003735 ... P80339 40055575
    952842 9d0j:25 (2.5) BS02 MG N/A GO:0003735 ... P80339 40055575
    952843 9d0j:25 (2.5) BS03 ZN N/A GO:0003735 ... P80339 40055575
    952844 9d0j:26 (2.5) BS01 rna N/A GO:0003735 ... P35871 40055575
    952845 9d0j:26 (2.5) BS02 ZN N/A GO:0003735 ... P35871 40055575
    952846 9d0j:27 (2.5) BS01 rna N/A GO:0003735 ... P80340 40055575
    952847 9d0j:27 (2.5) BS02 MG N/A GO:0003735 ... P80340 40055575
    952848 9d0j:28 (2.5) BS01 rna N/A GO:0003735 ... Q5SKU1 40055575
    952849 9d0j:28 (2.5) BS02 MG N/A GO:0003735 ... Q5SKU1 40055575
    952850 9d0j:29 (2.5) BS01 rna N/A GO:0003735 ... Q5SHR2 40055575
    952851 9d0j:29 (2.5) BS02 ZN N/A GO:0003735 ... Q5SHR2 40055575
    952852 9d0j:2D (2.5) BS01 rna N/A GO:0002181 ... P60405 40055575
    952853 9d0j:2D (2.5) BS02 rna N/A GO:0002181 ... P60405 40055575
    952854 9d0j:2D (2.5) BS03 MG N/A GO:0002181 ... P60405 40055575
    952855 9d0j:2D (2.5) BS04 MG N/A GO:0002181 ... P60405 40055575
    952856 9d0j:2D (2.5) BS05 MG N/A GO:0002181 ... P60405 40055575
    952857 9d0j:2D (2.5) BS06 MG N/A GO:0002181 ... P60405 40055575
    952858 9d0j:2D (2.5) BS07 MG N/A GO:0002181 ... P60405 40055575
    952859 9d0j:2E (2.5) BS01 rna N/A GO:0003735 ... Q5SHN8 40055575
    952860 9d0j:2E (2.5) BS02 MG N/A GO:0003735 ... Q5SHN8 40055575
    952861 9d0j:2F (2.5) BS01 rna N/A GO:0003735 ... Q5SHN9 40055575
    952862 9d0j:2F (2.5) BS02 MG N/A GO:0003735 ... Q5SHN9 40055575
    952863 9d0j:2F (2.5) BS03 MG N/A GO:0003735 ... Q5SHN9 40055575
    952864 9d0j:2F (2.5) BS04 MG N/A GO:0003735 ... Q5SHN9 40055575
    952865 9d0j:2F (2.5) BS05 MG N/A GO:0003735 ... Q5SHN9 40055575
    952866 9d0j:2G (2.5) BS01 rna N/A GO:0000049 ... Q5SHQ0 40055575
    952867 9d0j:2G (2.5) BS02 rna N/A GO:0000049 ... Q5SHQ0 40055575
    952868 9d0j:2G (2.5) BS03 rna N/A GO:0000049 ... Q5SHQ0 40055575
    952869 9d0j:2H (2.5) BS01 rna N/A GO:0002181 ... P0DOY8 40055575
    952870 9d0j:2I (2.5) BS01 rna N/A GO:0003735 ... Q5SLQ1 40055575
    952871 9d0j:2N (2.5) BS01 rna N/A GO:0003729 ... P60488 40055575
    952872 9d0j:2O (2.5) BS01 rna N/A GO:0003735 ... Q5SHP8 40055575
    952873 9d0j:2O (2.5) BS02 rna N/A GO:0003735 ... Q5SHP8 40055575
    952874 9d0j:2P (2.5) BS01 rna N/A GO:0003735 ... Q5SHQ7 40055575
    952875 9d0j:2Q (2.5) BS01 rna N/A GO:0003735 ... P60489 40055575
    952876 9d0j:2Q (2.5) BS02 rna N/A GO:0003735 ... P60489 40055575
    952877 9d0j:2Q (2.5) BS03 rna N/A GO:0003735 ... P60489 40055575
    952878 9d0j:2Q (2.5) BS04 MG N/A GO:0003735 ... P60489 40055575
    952879 9d0j:2Q (2.5) BS05 MG N/A GO:0003735 ... P60489 40055575
    952880 9d0j:2R (2.5) BS01 rna N/A GO:0003735 ... Q9Z9H5 40055575
    952881 9d0j:2S (2.5) BS01 rna N/A GO:0003735 ... Q5SHQ4 40055575
    952882 9d0j:2S (2.5) BS02 rna N/A GO:0003735 ... Q5SHQ4 40055575
    952883 9d0j:2T (2.5) BS01 rna N/A GO:0003735 ... P60490 40055575
    952884 9d0j:2T (2.5) BS02 rna N/A GO:0003735 ... P60490 40055575
    952885 9d0j:2U (2.5) BS01 rna N/A GO:0000027 ... P60491 40055575
    952886 9d0j:2U (2.5) BS02 MG N/A GO:0000027 ... P60491 40055575
    952887 9d0j:2V (2.5) BS01 rna N/A GO:0003723 ... P60492 40055575
    952888 9d0j:2V (2.5) BS02 MG N/A GO:0003723 ... P60492 40055575
    952889 9d0j:2W (2.5) BS01 rna N/A GO:0003735 ... Q5SHP3 40055575
    952890 9d0j:2W (2.5) BS02 MG N/A GO:0003735 ... Q5SHP3 40055575
    952891 9d0j:2W (2.5) BS03 MG N/A GO:0003735 ... Q5SHP3 40055575
    952892 9d0j:2X (2.5) BS01 rna N/A GO:0003735 ... Q5SHP0 40055575
    952893 9d0j:2X (2.5) BS02 MG N/A GO:0003735 ... Q5SHP0 40055575
    952894 9d0j:2Y (2.5) BS01 rna N/A GO:0003723 ... Q5SHP9 40055575
    952895 9d0j:2Y (2.5) BS02 ZN N/A GO:0003723 ... Q5SHP9 40055575
    952896 9d0j:2Z (2.5) BS01 rna N/A GO:0003723 ... Q5SHZ1 40055575
    952897 9d0j:2Z (2.5) BS02 rna N/A GO:0003723 ... Q5SHZ1 40055575
    952898 9d0j:2Z (2.5) BS03 MG N/A GO:0003723 ... Q5SHZ1 40055575
    952899 9d0j:2b (2.5) BS01 rna N/A GO:0003735 ... P80371 40055575
    952900 9d0j:2c (2.5) BS01 rna N/A GO:0003676 ... P80372 40055575
    952901 9d0j:2d (2.5) BS01 rna N/A GO:0003723 ... P80373 40055575
    952902 9d0j:2d (2.5) BS02 MG N/A GO:0003723 ... P80373 40055575
    952903 9d0j:2d (2.5) BS03 SF4 N/A GO:0003723 ... P80373 40055575
    952904 9d0j:2e (2.5) BS01 rna N/A GO:0003723 ... Q5SHQ5 40055575
    952905 9d0j:2e (2.5) BS02 MG N/A GO:0003723 ... Q5SHQ5 40055575
    952906 9d0j:2f (2.5) BS01 rna N/A GO:0003735 ... Q5SLP8 40055575
    952907 9d0j:2f (2.5) BS02 MG N/A GO:0003735 ... Q5SLP8 40055575
    952908 9d0j:2g (2.5) BS01 rna N/A GO:0000049 ... P17291 40055575
    952909 9d0j:2g (2.5) BS02 rna N/A GO:0000049 ... P17291 40055575
    952910 9d0j:2h (2.5) BS01 rna N/A GO:0003735 ... P0DOY9 40055575
    952911 9d0j:2i (2.5) BS01 rna N/A GO:0003723 ... P80374 40055575
    952912 9d0j:2j (2.5) BS01 rna N/A GO:0000049 ... Q5SHN7 40055575
    952913 9d0j:2k (2.5) BS01 rna N/A GO:0003735 ... P80376 40055575
    952914 9d0j:2k (2.5) BS02 MG N/A GO:0003735 ... P80376 40055575
    952915 9d0j:2l (2.5) BS01 rna N/A GO:0000049 ... Q5SHN3 40055575
    952916 9d0j:2l (2.5) BS02 MG N/A GO:0000049 ... Q5SHN3 40055575
    952917 9d0j:2l (2.5) BS03 MG N/A GO:0000049 ... Q5SHN3 40055575
    952918 9d0j:2l (2.5) BS04 MG N/A GO:0000049 ... Q5SHN3 40055575
    952919 9d0j:2m (2.5) BS01 rna N/A GO:0000049 ... P80377 40055575
    952920 9d0j:2m (2.5) BS02 rna N/A GO:0000049 ... P80377 40055575
    952921 9d0j:2m (2.5) BS03 rna N/A GO:0000049 ... P80377 40055575
    952922 9d0j:2m (2.5) BS04 rna N/A GO:0000049 ... P80377 40055575
    952923 9d0j:2n (2.5) BS01 rna N/A GO:0003735 ... P0DOY6 40055575
    952924 9d0j:2n (2.5) BS02 ZN N/A GO:0003735 ... P0DOY6 40055575
    952925 9d0j:2o (2.5) BS01 rna N/A GO:0003735 ... Q5SJ76 40055575
    952926 9d0j:2o (2.5) BS02 rna N/A GO:0003735 ... Q5SJ76 40055575
    952927 9d0j:2p (2.5) BS01 rna N/A GO:0003735 ... Q5SJH3 40055575
    952928 9d0j:2q (2.5) BS01 rna N/A GO:0003735 ... P0DOY7 40055575
    952929 9d0j:2q (2.5) BS02 MG N/A GO:0003735 ... P0DOY7 40055575
    952930 9d0j:2q (2.5) BS03 MG N/A GO:0003735 ... P0DOY7 40055575
    952931 9d0j:2r (2.5) BS01 rna N/A GO:0003735 ... Q5SLQ0 40055575
    952932 9d0j:2s (2.5) BS01 rna N/A GO:0000028 ... Q5SHP2 40055575
    952933 9d0j:2t (2.5) BS01 rna N/A GO:0003723 ... P80380 40055575
    952934 9d0j:2t (2.5) BS02 MG N/A GO:0003723 ... P80380 40055575
    952935 9d0p:A (2.65) BS01 8X7 N/A GO:0004672 ... P53350 40858617
    952936 9d0p:A (2.65) BS02 ZN N/A GO:0004672 ... P53350 40858617
    952937 9d0q:A (1.96) BS01 A1A1S N/A GO:0004672 ... P30291 40858617
    952938 9d0q:B (1.96) BS01 A1A1S N/A GO:0004672 ... P30291 40858617
    952939 9d0r:A (2.34) BS01 A1A1T N/A GO:0004672 ... P30291 40858617
    952940 9d0s:A (1.64) BS01 A1A1R N/A GO:0004672 ... P30291 40858617
    952941 9d0u:A (2.6) BS01 A1A1H N/A GO:0000082 ... P24941 40250405
    952942 9d0v:A (2.54) BS01 A1A1H N/A GO:0000082 ... P24941 40250405
    952943 9d0w:B (2.95) BS01 ZN N/A GO:0005515 ... Q96SW2 40250405
    952944 9d0w:B (2.95) BS02 A1A1I N/A GO:0005515 ... Q96SW2 40250405
    952945 9d0w:C (2.95) BS01 A1A1I N/A GO:0000082 ... P24941 40250405
    952946 9d0x:B (2.84) BS01 ZN N/A GO:0005515 ... Q96SW2 40250405
    952947 9d0x:B (2.84) BS02 A1A1I N/A GO:0005515 ... Q96SW2 40250405
    952948 9d0x:C (2.84) BS01 A1A1I N/A GO:0000082 ... P24941 40250405
    952949 9d0z:A (1.8) BS01 CU N/A GO:0005576 ... G2Q7A5 39563485
    952950 9d0z:B (1.8) BS01 CU N/A GO:0005576 ... G2Q7A5 39563485
    952951 9d11:A (1.684) BS01 A1A1O N/A GO:0006338 ... P51531 39745064
    952952 9d11:B (1.684) BS01 A1A1O N/A GO:0006338 ... P51531 39745064
    952953 9d11:C (1.684) BS01 A1A1O N/A GO:0006338 ... P51531 39745064
    952954 9d12:A (2.099) BS01 A1A1P N/A GO:0006338 ... P51531 39745064
    952955 9d12:B (2.099) BS01 A1A1P N/A GO:0006338 ... P51531 39745064
    952956 9d12:C (2.099) BS01 A1A1P N/A GO:0006338 ... P51531 39745064
    952957 9d14:A (1.88) BS01 MG N/A GO:0008195 ... I7MFJ3 41109341
    952958 9d14:A (1.88) BS02 GOL N/A GO:0008195 ... I7MFJ3 41109341
    952959 9d15:A (2.25) BS01 WO4 N/A GO:0008195 ... I7MFJ3 41109341
    952960 9d15:A (2.25) BS02 WO4 N/A GO:0008195 ... I7MFJ3 41109341
    952961 9d15:A (2.25) BS03 MG N/A GO:0008195 ... I7MFJ3 41109341
    952962 9d16:A (2.4) BS01 CA N/A GO:0008195 ... I7MFJ3 41109341
    952963 9d16:A (2.4) BS02 GOL N/A GO:0008195 ... I7MFJ3 41109341
    952964 9d16:B (2.4) BS01 CA N/A GO:0008195 ... I7MFJ3 41109341
    952965 9d16:B (2.4) BS02 GOL N/A GO:0008195 ... I7MFJ3 41109341
    952966 9d17:A (1.97) BS01 A1A1X N/A GO:0004252 ... O00187 40010268
    952967 9d18:A (2.88) BS01 MG N/A GO:0005216 ... Q12791 39971906
    952968 9d18:A (2.88) BS02 CA N/A GO:0005216 ... Q12791 39971906
    952969 9d18:A (2.88) BS03 CA N/A GO:0005216 ... Q12791 39971906
    952970 9d18:A (2.88) BS04 CLR N/A GO:0005216 ... Q12791 39971906
    952971 9d18:B (2.88) BS01 MG N/A GO:0005216 ... Q12791 39971906
    952972 9d18:B (2.88) BS02 CA N/A GO:0005216 ... Q12791 39971906
    952973 9d18:B (2.88) BS03 CA N/A GO:0005216 ... Q12791 39971906
    952974 9d18:B (2.88) BS04 CLR N/A GO:0005216 ... Q12791 39971906
    952975 9d18:B (2.88) BS05 CLR N/A GO:0005216 ... Q12791 39971906
    952976 9d18:B (2.88) BS06 CLR N/A GO:0005216 ... Q12791 39971906
    952977 9d18:C (2.88) BS01 MG N/A GO:0005216 ... Q12791 39971906
    952978 9d18:C (2.88) BS02 CA N/A GO:0005216 ... Q12791 39971906
    952979 9d18:C (2.88) BS03 CA N/A GO:0005216 ... Q12791 39971906
    952980 9d18:C (2.88) BS04 CLR N/A GO:0005216 ... Q12791 39971906
    952981 9d18:C (2.88) BS05 CLR N/A GO:0005216 ... Q12791 39971906
    952982 9d18:C (2.88) BS06 CLR N/A GO:0005216 ... Q12791 39971906
    952983 9d18:D (2.88) BS01 MG N/A GO:0005216 ... Q12791 39971906
    952984 9d18:D (2.88) BS02 CA N/A GO:0005216 ... Q12791 39971906
    952985 9d18:D (2.88) BS03 CA N/A GO:0005216 ... Q12791 39971906
    952986 9d18:D (2.88) BS04 CLR N/A GO:0005216 ... Q12791 39971906
    952987 9d18:D (2.88) BS05 CLR N/A GO:0005216 ... Q12791 39971906
    952988 9d18:D (2.88) BS06 CLR N/A GO:0005216 ... Q12791 39971906
    952989 9d19:A (2.88) BS01 MG N/A GO:0005216 ... Q12791 39971906
    952990 9d19:A (2.88) BS02 CA N/A GO:0005216 ... Q12791 39971906
    952991 9d19:A (2.88) BS03 CA N/A GO:0005216 ... Q12791 39971906
    952992 9d19:A (2.88) BS04 CLR N/A GO:0005216 ... Q12791 39971906
    952993 9d19:B (2.88) BS01 MG N/A GO:0005216 ... Q12791 39971906
    952994 9d19:B (2.88) BS02 CA N/A GO:0005216 ... Q12791 39971906
    952995 9d19:B (2.88) BS03 CA N/A GO:0005216 ... Q12791 39971906
    952996 9d19:B (2.88) BS04 CLR N/A GO:0005216 ... Q12791 39971906
    952997 9d19:B (2.88) BS05 CLR N/A GO:0005216 ... Q12791 39971906
    952998 9d19:B (2.88) BS06 CLR N/A GO:0005216 ... Q12791 39971906
    952999 9d19:C (2.88) BS01 MG N/A GO:0005216 ... Q12791 39971906
    953000 9d19:C (2.88) BS02 CA N/A GO:0005216 ... Q12791 39971906

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).