SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    953001 9d19:C (2.88) BS03 CA N/A GO:0005216 ... Q12791 39971906
    953002 9d19:C (2.88) BS04 CLR N/A GO:0005216 ... Q12791 39971906
    953003 9d19:C (2.88) BS05 CLR N/A GO:0005216 ... Q12791 39971906
    953004 9d19:C (2.88) BS06 CLR N/A GO:0005216 ... Q12791 39971906
    953005 9d19:D (2.88) BS01 MG N/A GO:0005216 ... Q12791 39971906
    953006 9d19:D (2.88) BS02 CA N/A GO:0005216 ... Q12791 39971906
    953007 9d19:D (2.88) BS03 CA N/A GO:0005216 ... Q12791 39971906
    953008 9d19:D (2.88) BS04 CLR N/A GO:0005216 ... Q12791 39971906
    953009 9d19:D (2.88) BS05 CLR N/A GO:0005216 ... Q12791 39971906
    953010 9d19:D (2.88) BS06 CLR N/A GO:0005216 ... Q12791 39971906
    953011 9d1w:H (3.44) BS01 BMA N/A N/A N/A 39826122
    953012 9d1w:H (3.44) BS02 MAN N/A N/A N/A 39826122
    953013 9d1w:H (3.44) BS03 MAN N/A N/A N/A 39826122
    953014 9d1w:H (3.44) BS04 MAN N/A N/A N/A 39826122
    953015 9d1w:L (3.44) BS01 MAN N/A N/A N/A 39826122
    953016 9d1x:A (1.6) BS01 A1A6M N/A GO:0004672 ... P22607 N/A
    953017 9d20:B (2.673) BS01 FUC N/A GO:0005509 ... P80370 40593645
    953018 9d20:B (2.673) BS02 BGC N/A GO:0005509 ... P80370 40593645
    953019 9d20:D (2.673) BS01 BGC N/A GO:0005509 ... P80370 40593645
    953020 9d22:A (2.6) BS01 dna N/A GO:0003700 ... Q99JB6 N/A
    953021 9d22:A (2.6) BS02 dna N/A GO:0003700 ... Q99JB6 N/A
    953022 9d22:B (2.6) BS01 dna N/A GO:0003700 ... Q99JB6 N/A
    953023 9d22:B (2.6) BS02 dna N/A GO:0003700 ... Q99JB6 N/A
    953024 9d22:C (2.6) BS01 dna N/A GO:0003700 ... Q99JB6 N/A
    953025 9d22:C (2.6) BS02 dna N/A GO:0003700 ... Q99JB6 N/A
    953026 9d22:D (2.6) BS01 dna N/A GO:0003700 ... Q99JB6 N/A
    953027 9d22:D (2.6) BS02 dna N/A GO:0003700 ... Q99JB6 N/A
    953028 9d22:E (2.6) BS01 dna N/A GO:0003700 ... Q99JB6 N/A
    953029 9d22:E (2.6) BS02 dna N/A GO:0003700 ... Q99JB6 N/A
    953030 9d22:F (2.6) BS01 dna N/A GO:0003700 ... Q99JB6 N/A
    953031 9d22:F (2.6) BS02 dna N/A GO:0003700 ... Q99JB6 N/A
    953032 9d22:G (2.6) BS01 dna N/A GO:0003700 ... Q99JB6 N/A
    953033 9d22:G (2.6) BS02 dna N/A GO:0003700 ... Q99JB6 N/A
    953034 9d22:H (2.6) BS01 dna N/A GO:0003700 ... Q99JB6 N/A
    953035 9d22:H (2.6) BS02 dna N/A GO:0003700 ... Q99JB6 N/A
    953036 9d22:I (2.6) BS01 dna N/A GO:0003700 ... Q99JB6 N/A
    953037 9d22:I (2.6) BS02 dna N/A GO:0003700 ... Q99JB6 N/A
    953038 9d22:J (2.6) BS01 dna N/A GO:0003700 ... Q99JB6 N/A
    953039 9d22:J (2.6) BS02 dna N/A GO:0003700 ... Q99JB6 N/A
    953040 9d22:K (2.6) BS01 dna N/A GO:0003700 ... Q99JB6 N/A
    953041 9d26:A (2.6) BS01 HEM N/A GO:0009058 ... A0A0P0FP54 40940422
    953042 9d2a:A (2.21) BS01 CO N/A GO:0000287 ... R9WS05 39527408
    953043 9d2a:A (2.21) BS02 CO N/A GO:0000287 ... R9WS05 39527408
    953044 9d2a:B (2.21) BS01 CO N/A GO:0000287 ... R9WS05 39527408
    953045 9d2a:B (2.21) BS02 CO N/A GO:0000287 ... R9WS05 39527408
    953046 9d2a:B (2.21) BS03 CO N/A GO:0000287 ... R9WS05 39527408
    953047 9d2a:C (2.21) BS01 CO N/A GO:0000287 ... R9WS05 39527408
    953048 9d2a:C (2.21) BS02 CO N/A GO:0000287 ... R9WS05 39527408
    953049 9d2a:D (2.21) BS01 CO N/A GO:0000287 ... R9WS05 39527408
    953050 9d2a:D (2.21) BS02 CO N/A GO:0000287 ... R9WS05 39527408
    953051 9d2b:A (3.08) BS01 GTP N/A GO:0000226 ... P81947 41173848
    953052 9d2b:B (3.08) BS01 G2P N/A GO:0000226 ... Q6B856 41173848
    953053 9d2b:C (3.08) BS01 GTP N/A GO:0000226 ... P81947 41173848
    953054 9d2b:F (3.08) BS01 peptide N/A GO:0051225 ... A0A8J1MAE8 41173848
    953055 9d2b:H (3.08) BS01 peptide N/A N/A Q0IHJ3 41173848
    953056 9d2c:A (2.38) BS01 MOO N/A GO:0015689 ... A0A0U3FVB3 40126018
    953057 9d2c:A (2.38) BS02 MOO N/A GO:0015689 ... A0A0U3FVB3 40126018
    953058 9d2c:A (2.38) BS03 MOO N/A GO:0015689 ... A0A0U3FVB3 40126018
    953059 9d2c:B (2.38) BS01 MOO N/A GO:0015689 ... A0A0U3FVB3 40126018
    953060 9d2c:B (2.38) BS02 MOO N/A GO:0015689 ... A0A0U3FVB3 40126018
    953061 9d2c:B (2.38) BS03 MOO N/A GO:0015689 ... A0A0U3FVB3 40126018
    953062 9d2c:C (2.38) BS01 MOO N/A GO:0015689 ... A0A0U3FVB3 40126018
    953063 9d2c:C (2.38) BS02 MOO N/A GO:0015689 ... A0A0U3FVB3 40126018
    953064 9d2c:C (2.38) BS03 MOO N/A GO:0015689 ... A0A0U3FVB3 40126018
    953065 9d2c:D (2.38) BS01 MOO N/A GO:0015689 ... A0A0U3FVB3 40126018
    953066 9d2c:D (2.38) BS02 MOO N/A GO:0015689 ... A0A0U3FVB3 40126018
    953067 9d2c:D (2.38) BS03 MOO N/A GO:0015689 ... A0A0U3FVB3 40126018
    953068 9d2c:E (2.38) BS01 MOO N/A GO:0015689 ... A0A0U3FVB3 40126018
    953069 9d2c:E (2.38) BS02 MOO N/A GO:0015689 ... A0A0U3FVB3 40126018
    953070 9d2c:E (2.38) BS03 MOO N/A GO:0015689 ... A0A0U3FVB3 40126018
    953071 9d2c:F (2.38) BS01 MOO N/A GO:0015689 ... A0A0U3FVB3 40126018
    953072 9d2c:F (2.38) BS02 MOO N/A GO:0015689 ... A0A0U3FVB3 40126018
    953073 9d2c:F (2.38) BS03 MOO N/A GO:0015689 ... A0A0U3FVB3 40126018
    953074 9d2c:H (2.38) BS01 MOO N/A GO:0015689 ... A0A0U3FVB3 40126018
    953075 9d2c:H (2.38) BS02 MOO N/A GO:0015689 ... A0A0U3FVB3 40126018
    953076 9d2c:H (2.38) BS03 MOO N/A GO:0015689 ... A0A0U3FVB3 40126018
    953077 9d2c:I (2.38) BS01 MOO N/A GO:0015689 ... A0A0U3FVB3 40126018
    953078 9d2c:I (2.38) BS02 MOO N/A GO:0015689 ... A0A0U3FVB3 40126018
    953079 9d2c:I (2.38) BS03 MOO N/A GO:0015689 ... A0A0U3FVB3 40126018
    953080 9d2c:J (2.38) BS01 MOO N/A GO:0015689 ... A0A0U3FVB3 40126018
    953081 9d2c:J (2.38) BS02 MOO N/A GO:0015689 ... A0A0U3FVB3 40126018
    953082 9d2c:J (2.38) BS03 MOO N/A GO:0015689 ... A0A0U3FVB3 40126018
    953083 9d2c:K (2.38) BS01 MOO N/A GO:0015689 ... A0A0U3FVB3 40126018
    953084 9d2c:K (2.38) BS02 MOO N/A GO:0015689 ... A0A0U3FVB3 40126018
    953085 9d2c:K (2.38) BS03 MOO N/A GO:0015689 ... A0A0U3FVB3 40126018
    953086 9d2c:L (2.38) BS01 MOO N/A GO:0015689 ... A0A0U3FVB3 40126018
    953087 9d2c:L (2.38) BS02 MOO N/A GO:0015689 ... A0A0U3FVB3 40126018
    953088 9d2c:L (2.38) BS03 MOO N/A GO:0015689 ... A0A0U3FVB3 40126018
    953089 9d2c:M (2.38) BS01 MOO N/A GO:0015689 ... A0A0U3FVB3 40126018
    953090 9d2c:M (2.38) BS02 MOO N/A GO:0015689 ... A0A0U3FVB3 40126018
    953091 9d2e:A (2.9) BS01 dna N/A GO:0003700 ... Q99JB6 N/A
    953092 9d2e:A (2.9) BS02 dna N/A GO:0003700 ... Q99JB6 N/A
    953093 9d2e:B (2.9) BS01 dna N/A GO:0003700 ... Q99JB6 N/A
    953094 9d2e:B (2.9) BS02 dna N/A GO:0003700 ... Q99JB6 N/A
    953095 9d2e:C (2.9) BS01 dna N/A GO:0003700 ... Q99JB6 N/A
    953096 9d2e:C (2.9) BS02 dna N/A GO:0003700 ... Q99JB6 N/A
    953097 9d2e:D (2.9) BS01 dna N/A GO:0003700 ... Q99JB6 N/A
    953098 9d2e:D (2.9) BS02 dna N/A GO:0003700 ... Q99JB6 N/A
    953099 9d2e:E (2.9) BS01 dna N/A GO:0003700 ... Q99JB6 N/A
    953100 9d2e:E (2.9) BS02 dna N/A GO:0003700 ... Q99JB6 N/A
    953101 9d2e:F (2.9) BS01 dna N/A GO:0003700 ... Q99JB6 N/A
    953102 9d2e:F (2.9) BS02 dna N/A GO:0003700 ... Q99JB6 N/A
    953103 9d2e:G (2.9) BS01 dna N/A GO:0003700 ... Q99JB6 N/A
    953104 9d2e:G (2.9) BS02 dna N/A GO:0003700 ... Q99JB6 N/A
    953105 9d2e:H (2.9) BS01 dna N/A GO:0003700 ... Q99JB6 N/A
    953106 9d2e:H (2.9) BS02 dna N/A GO:0003700 ... Q99JB6 N/A
    953107 9d2f:M (4.7) BS01 ZN N/A GO:0003674 ... A2BGJ5 40579595
    953108 9d2f:M (4.7) BS02 ZN N/A GO:0003674 ... A2BGJ5 40579595
    953109 9d2h:A (2.1) BS01 BLA N/A GO:0006355 ... Q09E27 39575537
    953110 9d2h:B (2.1) BS01 BLA N/A GO:0006355 ... Q09E27 39575537
    953111 9d2i:A (2.96) BS01 dna N/A GO:0003677 ... P15801 40069189
    953112 9d2i:A (2.96) BS02 dna N/A GO:0003677 ... P15801 40069189
    953113 9d2i:A (2.96) BS03 DTP N/A GO:0003677 ... P15801 40069189
    953114 9d2i:A (2.96) BS04 MG N/A GO:0003677 ... P15801 40069189
    953115 9d2j:A (2.8) BS01 dna N/A GO:0003700 ... Q99JB6 N/A
    953116 9d2j:A (2.8) BS02 dna N/A GO:0003700 ... Q99JB6 N/A
    953117 9d2j:B (2.8) BS01 dna N/A GO:0003700 ... Q99JB6 N/A
    953118 9d2j:B (2.8) BS02 dna N/A GO:0003700 ... Q99JB6 N/A
    953119 9d2j:C (2.8) BS01 dna N/A GO:0003700 ... Q99JB6 N/A
    953120 9d2j:C (2.8) BS02 dna N/A GO:0003700 ... Q99JB6 N/A
    953121 9d2j:D (2.8) BS01 dna N/A GO:0003700 ... Q99JB6 N/A
    953122 9d2j:D (2.8) BS02 dna N/A GO:0003700 ... Q99JB6 N/A
    953123 9d2j:E (2.8) BS01 dna N/A GO:0003700 ... Q99JB6 N/A
    953124 9d2j:E (2.8) BS02 dna N/A GO:0003700 ... Q99JB6 N/A
    953125 9d2j:F (2.8) BS01 dna N/A GO:0003700 ... Q99JB6 N/A
    953126 9d2j:F (2.8) BS02 dna N/A GO:0003700 ... Q99JB6 N/A
    953127 9d2j:G (2.8) BS01 dna N/A GO:0003700 ... Q99JB6 N/A
    953128 9d2j:G (2.8) BS02 dna N/A GO:0003700 ... Q99JB6 N/A
    953129 9d2j:H (2.8) BS01 dna N/A GO:0003700 ... Q99JB6 N/A
    953130 9d2j:H (2.8) BS02 dna N/A GO:0003700 ... Q99JB6 N/A
    953131 9d2k:A (2.7) BS01 A1A6J N/A GO:0006508 ... P0DTD1 39499574
    953132 9d2k:A (2.7) BS02 ZN N/A GO:0006508 ... P0DTD1 39499574
    953133 9d2k:A (2.7) BS03 ZN N/A GO:0006508 ... P0DTD1 39499574
    953134 9d2k:B (2.7) BS01 A1A6J N/A GO:0006508 ... P0DTD1 39499574
    953135 9d2k:B (2.7) BS02 ZN N/A GO:0006508 ... P0DTD1 39499574
    953136 9d2k:B (2.7) BS03 ZN N/A GO:0006508 ... P0DTD1 39499574
    953137 9d2l:A (3.0) BS01 dna N/A GO:0003700 ... Q99JB6 N/A
    953138 9d2l:A (3.0) BS02 dna N/A GO:0003700 ... Q99JB6 N/A
    953139 9d2l:B (3.0) BS01 dna N/A GO:0003700 ... Q99JB6 N/A
    953140 9d2l:B (3.0) BS02 dna N/A GO:0003700 ... Q99JB6 N/A
    953141 9d2l:C (3.0) BS01 dna N/A GO:0003700 ... Q99JB6 N/A
    953142 9d2l:C (3.0) BS02 dna N/A GO:0003700 ... Q99JB6 N/A
    953143 9d2l:D (3.0) BS01 dna N/A GO:0003700 ... Q99JB6 N/A
    953144 9d2l:D (3.0) BS02 dna N/A GO:0003700 ... Q99JB6 N/A
    953145 9d2l:E (3.0) BS01 dna N/A GO:0003700 ... Q99JB6 N/A
    953146 9d2l:F (3.0) BS01 dna N/A GO:0003700 ... Q99JB6 N/A
    953147 9d2l:F (3.0) BS02 dna N/A GO:0003700 ... Q99JB6 N/A
    953148 9d2l:G (3.0) BS01 dna N/A GO:0003700 ... Q99JB6 N/A
    953149 9d2l:G (3.0) BS02 dna N/A GO:0003700 ... Q99JB6 N/A
    953150 9d2l:H (3.0) BS01 dna N/A GO:0003700 ... Q99JB6 N/A
    953151 9d2l:H (3.0) BS02 dna N/A GO:0003700 ... Q99JB6 N/A
    953152 9d2l:I (3.0) BS01 dna N/A GO:0003700 ... Q99JB6 N/A
    953153 9d2l:J (3.0) BS01 dna N/A GO:0003700 ... Q99JB6 N/A
    953154 9d2l:J (3.0) BS02 dna N/A GO:0003700 ... Q99JB6 N/A
    953155 9d2l:K (3.0) BS01 dna N/A GO:0003700 ... Q99JB6 N/A
    953156 9d2l:K (3.0) BS02 dna N/A GO:0003700 ... Q99JB6 N/A
    953157 9d2l:L (3.0) BS01 dna N/A GO:0003700 ... Q99JB6 N/A
    953158 9d2l:L (3.0) BS02 dna N/A GO:0003700 ... Q99JB6 N/A
    953159 9d2l:M (3.0) BS01 dna N/A GO:0003700 ... Q99JB6 N/A
    953160 9d2l:N (3.0) BS01 dna N/A GO:0003700 ... Q99JB6 N/A
    953161 9d2l:N (3.0) BS02 dna N/A GO:0003700 ... Q99JB6 N/A
    953162 9d2l:O (3.0) BS01 dna N/A GO:0003700 ... Q99JB6 N/A
    953163 9d2l:O (3.0) BS02 dna N/A GO:0003700 ... Q99JB6 N/A
    953164 9d2l:P (3.0) BS01 dna N/A GO:0003700 ... Q99JB6 N/A
    953165 9d2l:P (3.0) BS02 dna N/A GO:0003700 ... Q99JB6 N/A
    953166 9d2l:Q (3.0) BS01 dna N/A GO:0003700 ... Q99JB6 N/A
    953167 9d2l:Q (3.0) BS02 dna N/A GO:0003700 ... Q99JB6 N/A
    953168 9d2l:R (3.0) BS01 dna N/A GO:0003700 ... Q99JB6 N/A
    953169 9d2l:R (3.0) BS02 dna N/A GO:0003700 ... Q99JB6 N/A
    953170 9d2l:S (3.0) BS01 dna N/A GO:0003700 ... Q99JB6 N/A
    953171 9d2l:S (3.0) BS02 dna N/A GO:0003700 ... Q99JB6 N/A
    953172 9d2l:T (3.0) BS01 dna N/A GO:0003700 ... Q99JB6 N/A
    953173 9d2l:T (3.0) BS02 dna N/A GO:0003700 ... Q99JB6 N/A
    953174 9d2l:U (3.0) BS01 dna N/A GO:0003700 ... Q99JB6 N/A
    953175 9d2l:U (3.0) BS02 dna N/A GO:0003700 ... Q99JB6 N/A
    953176 9d2l:W (3.0) BS01 dna N/A GO:0003700 ... Q99JB6 N/A
    953177 9d2l:W (3.0) BS02 dna N/A GO:0003700 ... Q99JB6 N/A
    953178 9d2l:X (3.0) BS01 dna N/A GO:0003700 ... Q99JB6 N/A
    953179 9d2l:y (3.0) BS01 dna N/A GO:0003700 ... Q99JB6 N/A
    953180 9d2l:z (3.0) BS01 dna N/A GO:0003700 ... Q99JB6 N/A
    953181 9d2l:z (3.0) BS02 dna N/A GO:0003700 ... Q99JB6 N/A
    953182 9d2m:A (3.8) BS01 BMA N/A GO:0003700 ... A0A2R4U2X2 41381528
    953183 9d2m:B (3.8) BS01 BMA N/A GO:0003700 ... A0A2R4U2X2 41381528
    953184 9d2m:C (3.8) BS01 BMA N/A GO:0003700 ... A0A2R4U2X2 41381528
    953185 9d2o:A (1.8) BS01 A1A1N N/A GO:0004594 ... Q9H999 N/A
    953186 9d2o:A (1.8) BS02 ANP N/A GO:0004594 ... Q9H999 N/A
    953187 9d2p:A (1.8) BS01 MZI N/A GO:0004594 ... Q9H999 N/A
    953188 9d2p:A (1.8) BS02 ADP N/A GO:0004594 ... Q9H999 N/A
    953189 9d2r:A (1.6) BS01 ILE N/A N/A P04968 40494512
    953190 9d2s:A (1.22) BS01 ILE N/A N/A P04968 40494512
    953191 9d2u:A (1.57) BS01 A1A18 N/A N/A N/A 41835567
    953192 9d2x:E (2.29) BS01 dna N/A GO:0003700 ... Q9DEW5 N/A
    953193 9d2x:E (2.29) BS02 dna N/A GO:0003700 ... Q9DEW5 N/A
    953194 9d2x:F (2.29) BS01 dna N/A GO:0003700 ... Q9DEW5 N/A
    953195 9d2x:F (2.29) BS02 dna N/A GO:0003700 ... Q9DEW5 N/A
    953196 9d2y:A (3.87) BS01 A1BY8 N/A GO:0004312 ... A0AB33SQC8 40841798
    953197 9d2y:B (3.87) BS01 A1BY8 N/A GO:0004312 ... A0AB33SQC8 40841798
    953198 9d2y:B (3.87) BS02 A1BY8 N/A GO:0004312 ... A0AB33SQC8 40841798
    953199 9d2z:A (3.22) BS01 A1BY8 N/A GO:0004312 ... A0A0E8V6Y3 40841798
    953200 9d2z:A (3.22) BS02 A1BY8 N/A GO:0004312 ... A0A0E8V6Y3 40841798

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).