SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    953201 9d2z:B (3.22) BS01 A1BY8 N/A GO:0004312 ... A0A0E8V6Y3 40841798
    953202 9d30:A (3.74) BS01 MU4 N/A GO:0004312 ... Q02251 40841798
    953203 9d32:A (3.1) BS01 ZN N/A GO:0006508 ... C7ECT9 39922192
    953204 9d34:A (1.42) BS01 peptide N/A GO:0000045 ... Q8TDY2 N/A
    953205 9d37:A (3.34) BS01 GLY N/A GO:0001540 ... Q05586 39954679
    953206 9d37:B (3.34) BS01 GLU N/A GO:0005216 ... Q13224 39954679
    953207 9d37:C (3.34) BS01 GLY N/A GO:0001540 ... Q05586 39954679
    953208 9d37:D (3.34) BS01 GLU N/A GO:0005216 ... O15399 39954679
    953209 9d38:A (3.95) BS01 GLY N/A GO:0001540 ... Q05586 39954679
    953210 9d38:B (3.95) BS01 GLU N/A GO:0005216 ... Q13224 39954679
    953211 9d38:C (3.95) BS01 GLY N/A GO:0001540 ... Q05586 39954679
    953212 9d38:D (3.95) BS01 GLU N/A GO:0005216 ... O15399 39954679
    953213 9d39:A (3.65) BS01 GLY N/A GO:0001540 ... Q05586 39954679
    953214 9d39:B (3.65) BS01 2JL N/A GO:0005216 ... Q13224 39954679
    953215 9d39:C (3.65) BS01 GLY N/A GO:0001540 ... Q05586 39954679
    953216 9d39:D (3.65) BS01 2JL N/A GO:0005216 ... O15399 39954679
    953217 9d3a:A (3.78) BS01 GLY N/A GO:0001540 ... Q05586 39954679
    953218 9d3a:B (3.78) BS01 GLU N/A GO:0005216 ... Q13224 39954679
    953219 9d3a:C (3.78) BS01 GLY N/A GO:0001540 ... Q05586 39954679
    953220 9d3a:D (3.78) BS01 GLU N/A GO:0005216 ... O15399 39954679
    953221 9d3b:A (3.71) BS01 GLY N/A GO:0001540 ... Q05586 39954679
    953222 9d3b:B (3.71) BS01 GLU N/A GO:0005216 ... Q13224 39954679
    953223 9d3b:C (3.71) BS01 GLY N/A GO:0001540 ... Q05586 39954679
    953224 9d3b:D (3.71) BS01 GLU N/A GO:0005216 ... O15399 39954679
    953225 9d3b:D (3.71) BS02 A1A15 N/A GO:0005216 ... O15399 39954679
    953226 9d3c:A (3.96) BS01 GLY N/A GO:0001540 ... Q05586 39954679
    953227 9d3c:B (3.96) BS01 GLU N/A GO:0005216 ... Q13224 39954679
    953228 9d3c:C (3.96) BS01 GLY N/A GO:0001540 ... Q05586 39954679
    953229 9d3c:D (3.96) BS01 GLU N/A GO:0005216 ... O15399 39954679
    953230 9d3d:H (3.41) BS01 BMA N/A N/A N/A 39826122
    953231 9d3d:H (3.41) BS02 MAN N/A N/A N/A 39826122
    953232 9d3e:A (3.02) BS01 CLR N/A GO:0004930 ... N/A 39217154
    953233 9d3e:A (3.02) BS02 EBX N/A GO:0004930 ... N/A 39217154
    953234 9d3e:A (3.02) BS03 A1A1W N/A GO:0004930 ... N/A 39217154
    953235 9d3g:A (3.26) BS01 CLR N/A GO:0004930 ... N/A 39217154
    953236 9d3g:A (3.26) BS02 EBX N/A GO:0004930 ... N/A 39217154
    953237 9d3g:A (3.26) BS03 A1A2A N/A GO:0004930 ... N/A 39217154
    953238 9d3h:A (2.28) BS01 U6A N/A GO:0000049 ... Q9WZV6 N/A
    953239 9d3h:B (2.28) BS01 U6A N/A GO:0000049 ... Q9WZV6 N/A
    953240 9d3k:A (2.7) BS01 dna N/A GO:0000786 ... Q71DI3 40721296
    953241 9d3k:A (2.7) BS02 dna N/A GO:0000786 ... Q71DI3 40721296
    953242 9d3k:B (2.7) BS01 dna N/A GO:0003677 ... P62805 40721296
    953243 9d3k:B (2.7) BS02 dna N/A GO:0003677 ... P62805 40721296
    953244 9d3k:C (2.7) BS01 dna N/A GO:0000786 ... Q6FI13 40721296
    953245 9d3k:C (2.7) BS02 dna N/A GO:0000786 ... Q6FI13 40721296
    953246 9d3k:C (2.7) BS03 peptide N/A GO:0000786 ... Q6FI13 40721296
    953247 9d3k:D (2.7) BS01 dna N/A GO:0000786 ... Q99879 40721296
    953248 9d3k:D (2.7) BS02 peptide N/A GO:0000786 ... Q99879 40721296
    953249 9d3k:E (2.7) BS01 dna N/A GO:0000786 ... Q71DI3 40721296
    953250 9d3k:E (2.7) BS02 dna N/A GO:0000786 ... Q71DI3 40721296
    953251 9d3k:F (2.7) BS01 dna N/A GO:0003677 ... P62805 40721296
    953252 9d3k:F (2.7) BS02 dna N/A GO:0003677 ... P62805 40721296
    953253 9d3k:G (2.7) BS01 dna N/A GO:0000786 ... Q6FI13 40721296
    953254 9d3k:G (2.7) BS02 dna N/A GO:0000786 ... Q6FI13 40721296
    953255 9d3k:G (2.7) BS03 peptide N/A GO:0000786 ... Q6FI13 40721296
    953256 9d3k:H (2.7) BS01 dna N/A GO:0000786 ... Q99879 40721296
    953257 9d3k:H (2.7) BS02 peptide N/A GO:0000786 ... Q99879 40721296
    953258 9d3l:A (2.8) BS01 dna N/A GO:0000786 ... Q71DI3 40721296
    953259 9d3l:A (2.8) BS02 dna N/A GO:0000786 ... Q71DI3 40721296
    953260 9d3l:B (2.8) BS01 dna N/A GO:0003677 ... P62805 40721296
    953261 9d3l:B (2.8) BS02 dna N/A GO:0003677 ... P62805 40721296
    953262 9d3l:C (2.8) BS01 dna N/A GO:0000786 ... Q6FI13 40721296
    953263 9d3l:C (2.8) BS02 dna N/A GO:0000786 ... Q6FI13 40721296
    953264 9d3l:C (2.8) BS03 peptide N/A GO:0000786 ... Q6FI13 40721296
    953265 9d3l:D (2.8) BS01 dna N/A GO:0000786 ... Q99879 40721296
    953266 9d3l:D (2.8) BS02 peptide N/A GO:0000786 ... Q99879 40721296
    953267 9d3l:E (2.8) BS01 dna N/A GO:0000786 ... Q71DI3 40721296
    953268 9d3l:E (2.8) BS02 dna N/A GO:0000786 ... Q71DI3 40721296
    953269 9d3l:F (2.8) BS01 dna N/A GO:0003677 ... P62805 40721296
    953270 9d3l:F (2.8) BS02 dna N/A GO:0003677 ... P62805 40721296
    953271 9d3l:G (2.8) BS01 dna N/A GO:0000786 ... Q6FI13 40721296
    953272 9d3l:G (2.8) BS02 dna N/A GO:0000786 ... Q6FI13 40721296
    953273 9d3l:G (2.8) BS03 peptide N/A GO:0000786 ... Q6FI13 40721296
    953274 9d3l:H (2.8) BS01 dna N/A GO:0000786 ... Q99879 40721296
    953275 9d3l:H (2.8) BS02 peptide N/A GO:0000786 ... Q99879 40721296
    953276 9d3m:A (2.9) BS01 dna N/A GO:0000786 ... Q71DI3 40721296
    953277 9d3m:A (2.9) BS02 dna N/A GO:0000786 ... Q71DI3 40721296
    953278 9d3m:B (2.9) BS01 dna N/A GO:0003677 ... P62805 40721296
    953279 9d3m:B (2.9) BS02 dna N/A GO:0003677 ... P62805 40721296
    953280 9d3m:C (2.9) BS01 dna N/A GO:0000786 ... Q6FI13 40721296
    953281 9d3m:C (2.9) BS02 dna N/A GO:0000786 ... Q6FI13 40721296
    953282 9d3m:C (2.9) BS03 peptide N/A GO:0000786 ... Q6FI13 40721296
    953283 9d3m:D (2.9) BS01 dna N/A GO:0000786 ... Q99879 40721296
    953284 9d3m:D (2.9) BS02 dna N/A GO:0000786 ... Q99879 40721296
    953285 9d3m:E (2.9) BS01 dna N/A GO:0000786 ... Q71DI3 40721296
    953286 9d3m:E (2.9) BS02 dna N/A GO:0000786 ... Q71DI3 40721296
    953287 9d3m:F (2.9) BS01 dna N/A GO:0003677 ... P62805 40721296
    953288 9d3m:F (2.9) BS02 dna N/A GO:0003677 ... P62805 40721296
    953289 9d3m:G (2.9) BS01 dna N/A GO:0000786 ... Q6FI13 40721296
    953290 9d3m:G (2.9) BS02 dna N/A GO:0000786 ... Q6FI13 40721296
    953291 9d3m:H (2.9) BS01 dna N/A GO:0000786 ... Q99879 40721296
    953292 9d3m:H (2.9) BS02 peptide N/A GO:0000786 ... Q99879 40721296
    953293 9d3n:A (3.0) BS01 dna N/A GO:0000786 ... Q71DI3 40721296
    953294 9d3n:A (3.0) BS02 dna N/A GO:0000786 ... Q71DI3 40721296
    953295 9d3n:B (3.0) BS01 dna N/A GO:0003677 ... P62805 40721296
    953296 9d3n:B (3.0) BS02 dna N/A GO:0003677 ... P62805 40721296
    953297 9d3n:C (3.0) BS01 dna N/A GO:0000786 ... Q6FI13 40721296
    953298 9d3n:C (3.0) BS02 dna N/A GO:0000786 ... Q6FI13 40721296
    953299 9d3n:D (3.0) BS01 dna N/A GO:0000786 ... Q99879 40721296
    953300 9d3n:E (3.0) BS01 dna N/A GO:0000786 ... Q71DI3 40721296
    953301 9d3n:E (3.0) BS02 dna N/A GO:0000786 ... Q71DI3 40721296
    953302 9d3n:F (3.0) BS01 dna N/A GO:0003677 ... P62805 40721296
    953303 9d3n:F (3.0) BS02 dna N/A GO:0003677 ... P62805 40721296
    953304 9d3n:G (3.0) BS01 dna N/A GO:0000786 ... Q6FI13 40721296
    953305 9d3n:G (3.0) BS02 dna N/A GO:0000786 ... Q6FI13 40721296
    953306 9d3n:H (3.0) BS01 dna N/A GO:0000786 ... Q99879 40721296
    953307 9d3o:A (3.0) BS01 dna N/A GO:0000786 ... Q71DI3 40721296
    953308 9d3o:A (3.0) BS02 dna N/A GO:0000786 ... Q71DI3 40721296
    953309 9d3o:B (3.0) BS01 dna N/A GO:0003677 ... P62805 40721296
    953310 9d3o:B (3.0) BS02 dna N/A GO:0003677 ... P62805 40721296
    953311 9d3o:C (3.0) BS01 dna N/A GO:0000786 ... Q6FI13 40721296
    953312 9d3o:C (3.0) BS02 dna N/A GO:0000786 ... Q6FI13 40721296
    953313 9d3o:D (3.0) BS01 dna N/A GO:0000786 ... Q99879 40721296
    953314 9d3o:D (3.0) BS02 dna N/A GO:0000786 ... Q99879 40721296
    953315 9d3o:E (3.0) BS01 dna N/A GO:0000786 ... Q71DI3 40721296
    953316 9d3o:E (3.0) BS02 dna N/A GO:0000786 ... Q71DI3 40721296
    953317 9d3o:F (3.0) BS01 dna N/A GO:0003677 ... P62805 40721296
    953318 9d3o:F (3.0) BS02 dna N/A GO:0003677 ... P62805 40721296
    953319 9d3o:G (3.0) BS01 dna N/A GO:0000786 ... Q6FI13 40721296
    953320 9d3o:G (3.0) BS02 dna N/A GO:0000786 ... Q6FI13 40721296
    953321 9d3o:H (3.0) BS01 dna N/A GO:0000786 ... Q99879 40721296
    953322 9d3o:H (3.0) BS02 dna N/A GO:0000786 ... Q99879 40721296
    953323 9d3p:A (2.5) BS01 dna N/A GO:0000786 ... Q71DI3 40721296
    953324 9d3p:A (2.5) BS02 dna N/A GO:0000786 ... Q71DI3 40721296
    953325 9d3p:B (2.5) BS01 dna N/A GO:0003677 ... P62805 40721296
    953326 9d3p:B (2.5) BS02 dna N/A GO:0003677 ... P62805 40721296
    953327 9d3p:C (2.5) BS01 dna N/A GO:0000786 ... Q6FI13 40721296
    953328 9d3p:C (2.5) BS02 dna N/A GO:0000786 ... Q6FI13 40721296
    953329 9d3p:D (2.5) BS01 dna N/A GO:0000786 ... Q99879 40721296
    953330 9d3p:D (2.5) BS02 dna N/A GO:0000786 ... Q99879 40721296
    953331 9d3p:E (2.5) BS01 dna N/A GO:0000786 ... Q71DI3 40721296
    953332 9d3p:E (2.5) BS02 dna N/A GO:0000786 ... Q71DI3 40721296
    953333 9d3p:F (2.5) BS01 dna N/A GO:0003677 ... P62805 40721296
    953334 9d3p:F (2.5) BS02 dna N/A GO:0003677 ... P62805 40721296
    953335 9d3p:G (2.5) BS01 dna N/A GO:0000786 ... Q6FI13 40721296
    953336 9d3p:G (2.5) BS02 dna N/A GO:0000786 ... Q6FI13 40721296
    953337 9d3p:H (2.5) BS01 dna N/A GO:0000786 ... Q99879 40721296
    953338 9d3p:H (2.5) BS02 dna N/A GO:0000786 ... Q99879 40721296
    953339 9d3q:A (2.8) BS01 dna N/A GO:0000786 ... Q71DI3 40721296
    953340 9d3q:A (2.8) BS02 dna N/A GO:0000786 ... Q71DI3 40721296
    953341 9d3q:B (2.8) BS01 dna N/A GO:0003677 ... P62805 40721296
    953342 9d3q:B (2.8) BS02 dna N/A GO:0003677 ... P62805 40721296
    953343 9d3q:C (2.8) BS01 dna N/A GO:0000786 ... Q6FI13 40721296
    953344 9d3q:C (2.8) BS02 dna N/A GO:0000786 ... Q6FI13 40721296
    953345 9d3q:D (2.8) BS01 dna N/A GO:0000786 ... Q99879 40721296
    953346 9d3q:D (2.8) BS02 dna N/A GO:0000786 ... Q99879 40721296
    953347 9d3q:E (2.8) BS01 dna N/A GO:0000786 ... Q71DI3 40721296
    953348 9d3q:E (2.8) BS02 dna N/A GO:0000786 ... Q71DI3 40721296
    953349 9d3q:F (2.8) BS01 dna N/A GO:0003677 ... P62805 40721296
    953350 9d3q:F (2.8) BS02 dna N/A GO:0003677 ... P62805 40721296
    953351 9d3q:G (2.8) BS01 dna N/A GO:0000786 ... Q6FI13 40721296
    953352 9d3q:G (2.8) BS02 dna N/A GO:0000786 ... Q6FI13 40721296
    953353 9d3q:H (2.8) BS01 dna N/A GO:0000786 ... Q99879 40721296
    953354 9d3q:H (2.8) BS02 dna N/A GO:0000786 ... Q99879 40721296
    953355 9d3r:A (3.3) BS01 dna N/A GO:0000786 ... Q71DI3 40721296
    953356 9d3r:A (3.3) BS02 dna N/A GO:0000786 ... Q71DI3 40721296
    953357 9d3r:B (3.3) BS01 dna N/A GO:0003677 ... P62805 40721296
    953358 9d3r:B (3.3) BS02 dna N/A GO:0003677 ... P62805 40721296
    953359 9d3r:C (3.3) BS01 dna N/A GO:0000786 ... Q6FI13 40721296
    953360 9d3r:C (3.3) BS02 dna N/A GO:0000786 ... Q6FI13 40721296
    953361 9d3r:D (3.3) BS01 dna N/A GO:0000786 ... O60814 40721296
    953362 9d3r:D (3.3) BS02 dna N/A GO:0000786 ... O60814 40721296
    953363 9d3r:E (3.3) BS01 dna N/A GO:0000786 ... Q71DI3 40721296
    953364 9d3r:E (3.3) BS02 dna N/A GO:0000786 ... Q71DI3 40721296
    953365 9d3r:F (3.3) BS01 dna N/A GO:0003677 ... P62805 40721296
    953366 9d3r:F (3.3) BS02 dna N/A GO:0003677 ... P62805 40721296
    953367 9d3r:G (3.3) BS01 dna N/A GO:0000786 ... Q6FI13 40721296
    953368 9d3r:G (3.3) BS02 dna N/A GO:0000786 ... Q6FI13 40721296
    953369 9d3r:H (3.3) BS01 dna N/A GO:0000786 ... O60814 40721296
    953370 9d3r:H (3.3) BS02 dna N/A GO:0000786 ... O60814 40721296
    953371 9d3s:A (3.1) BS01 dna N/A GO:0000786 ... Q71DI3 40721296
    953372 9d3s:A (3.1) BS02 dna N/A GO:0000786 ... Q71DI3 40721296
    953373 9d3s:B (3.1) BS01 dna N/A GO:0003677 ... P62805 40721296
    953374 9d3s:B (3.1) BS02 dna N/A GO:0003677 ... P62805 40721296
    953375 9d3s:C (3.1) BS01 dna N/A GO:0000786 ... Q6FI13 40721296
    953376 9d3s:C (3.1) BS02 dna N/A GO:0000786 ... Q6FI13 40721296
    953377 9d3s:D (3.1) BS01 dna N/A GO:0000786 ... Q99879 40721296
    953378 9d3s:D (3.1) BS02 dna N/A GO:0000786 ... Q99879 40721296
    953379 9d3s:E (3.1) BS01 dna N/A GO:0000786 ... Q71DI3 40721296
    953380 9d3s:E (3.1) BS02 dna N/A GO:0000786 ... Q71DI3 40721296
    953381 9d3s:F (3.1) BS01 dna N/A GO:0003677 ... P62805 40721296
    953382 9d3s:F (3.1) BS02 dna N/A GO:0003677 ... P62805 40721296
    953383 9d3s:G (3.1) BS01 dna N/A GO:0000786 ... Q6FI13 40721296
    953384 9d3s:G (3.1) BS02 dna N/A GO:0000786 ... Q6FI13 40721296
    953385 9d3s:H (3.1) BS01 dna N/A GO:0000786 ... Q99879 40721296
    953386 9d3s:H (3.1) BS02 dna N/A GO:0000786 ... Q99879 40721296
    953387 9d3t:A (2.8) BS01 dna N/A GO:0000786 ... Q71DI3 40721296
    953388 9d3t:A (2.8) BS02 dna N/A GO:0000786 ... Q71DI3 40721296
    953389 9d3t:B (2.8) BS01 dna N/A GO:0003677 ... P62805 40721296
    953390 9d3t:B (2.8) BS02 dna N/A GO:0003677 ... P62805 40721296
    953391 9d3t:C (2.8) BS01 dna N/A GO:0000786 ... Q6FI13 40721296
    953392 9d3t:C (2.8) BS02 dna N/A GO:0000786 ... Q6FI13 40721296
    953393 9d3t:D (2.8) BS01 dna N/A GO:0000786 ... Q99879 40721296
    953394 9d3t:E (2.8) BS01 dna N/A GO:0000786 ... Q71DI3 40721296
    953395 9d3t:E (2.8) BS02 dna N/A GO:0000786 ... Q71DI3 40721296
    953396 9d3t:F (2.8) BS01 dna N/A GO:0003677 ... P62805 40721296
    953397 9d3t:F (2.8) BS02 dna N/A GO:0003677 ... P62805 40721296
    953398 9d3t:G (2.8) BS01 dna N/A GO:0000786 ... Q6FI13 40721296
    953399 9d3v:A (2.32) BS01 A1A5V N/A GO:0004672 ... P00533 39666597
    953400 9d3w:A (2.53) BS01 A1A5L N/A GO:0004672 ... P00533 39666597

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).