SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    953401 9d3x:A (2.6) BS01 DTP N/A GO:0000166 ... A0A3G6JS83 41313771
    953402 9d3x:A (2.6) BS02 DTP N/A GO:0000166 ... A0A3G6JS83 41313771
    953403 9d3x:A (2.6) BS03 ZN N/A GO:0000166 ... A0A3G6JS83 41313771
    953404 9d3x:A (2.6) BS04 DTP N/A GO:0000166 ... A0A3G6JS83 41313771
    953405 9d3x:A (2.6) BS05 DTP N/A GO:0000166 ... A0A3G6JS83 41313771
    953406 9d3x:B (2.6) BS01 DTP N/A GO:0000166 ... A0A3G6JS83 41313771
    953407 9d3x:B (2.6) BS02 DTP N/A GO:0000166 ... A0A3G6JS83 41313771
    953408 9d3x:B (2.6) BS03 DTP N/A GO:0000166 ... A0A3G6JS83 41313771
    953409 9d3x:B (2.6) BS04 DTP N/A GO:0000166 ... A0A3G6JS83 41313771
    953410 9d3x:B (2.6) BS05 ZN N/A GO:0000166 ... A0A3G6JS83 41313771
    953411 9d3y:A (2.08) BS01 A1A1Y N/A GO:0004252 ... O00187 40010268
    953412 9d40:A (1.76) BS01 A1A1Z N/A GO:0004252 ... O00187 40010268
    953413 9d44:A (1.42) BS01 CO N/A N/A A0AAN3A5R0 39663570
    953414 9d45:A (3.1) BS01 peptide N/A GO:0003723 ... P52918 40089503
    953415 9d45:B (3.1) BS01 GTP N/A GO:0003924 ... P32835 40089503
    953416 9d45:B (3.1) BS02 MG N/A GO:0003924 ... P32835 40089503
    953417 9d46:A (3.06) BS01 dna N/A GO:0000150 ... P25454 41371341
    953418 9d46:A (3.06) BS02 ATP N/A GO:0000150 ... P25454 41371341
    953419 9d46:A (3.06) BS03 MG N/A GO:0000150 ... P25454 41371341
    953420 9d46:B (3.06) BS01 dna N/A GO:0000150 ... P25454 41371341
    953421 9d46:B (3.06) BS02 ATP N/A GO:0000150 ... P25454 41371341
    953422 9d46:B (3.06) BS03 ATP N/A GO:0000150 ... P25454 41371341
    953423 9d46:C (3.06) BS01 dna N/A GO:0000150 ... P25454 41371341
    953424 9d46:C (3.06) BS02 ATP N/A GO:0000150 ... P25454 41371341
    953425 9d46:C (3.06) BS03 ATP N/A GO:0000150 ... P25454 41371341
    953426 9d46:D (3.06) BS01 dna N/A GO:0000150 ... P25454 41371341
    953427 9d46:D (3.06) BS02 ATP N/A GO:0000150 ... P25454 41371341
    953428 9d46:D (3.06) BS03 ATP N/A GO:0000150 ... P25454 41371341
    953429 9d46:E (3.06) BS01 dna N/A GO:0000150 ... P25454 41371341
    953430 9d46:E (3.06) BS02 ATP N/A GO:0000150 ... P25454 41371341
    953431 9d46:E (3.06) BS03 ATP N/A GO:0000150 ... P25454 41371341
    953432 9d46:F (3.06) BS01 dna N/A GO:0000150 ... P25454 41371341
    953433 9d46:F (3.06) BS02 ATP N/A GO:0000150 ... P25454 41371341
    953434 9d46:F (3.06) BS03 MG N/A GO:0000150 ... P25454 41371341
    953435 9d46:F (3.06) BS04 ATP N/A GO:0000150 ... P25454 41371341
    953436 9d47:A (2.62) BS01 FMN N/A GO:0004312 ... P34731 41043416
    953437 9d47:C (2.62) BS01 PKZ N/A GO:0000287 ... P43098 41043416
    953438 9d47:E (2.62) BS01 FMN N/A GO:0004312 ... P34731 41043416
    953439 9d47:G (2.62) BS01 PKZ N/A GO:0000287 ... P43098 41043416
    953440 9d47:I (2.62) BS01 FMN N/A GO:0004312 ... P34731 41043416
    953441 9d47:K (2.62) BS01 PKZ N/A GO:0000287 ... P43098 41043416
    953442 9d47:M (2.62) BS01 FMN N/A GO:0004312 ... P34731 41043416
    953443 9d47:O (2.62) BS01 PKZ N/A GO:0000287 ... P43098 41043416
    953444 9d47:Q (2.62) BS01 FMN N/A GO:0004312 ... P34731 41043416
    953445 9d47:S (2.62) BS01 PKZ N/A GO:0000287 ... P43098 41043416
    953446 9d47:U (2.62) BS01 FMN N/A GO:0004312 ... P34731 41043416
    953447 9d47:X (2.62) BS01 PKZ N/A GO:0000287 ... P43098 41043416
    953448 9d48:A (2.66) BS01 FMN N/A GO:0004312 ... P34731 41043416
    953449 9d48:E (2.66) BS01 FMN N/A GO:0004312 ... P34731 41043416
    953450 9d48:I (2.66) BS01 FMN N/A GO:0004312 ... P34731 41043416
    953451 9d48:M (2.66) BS01 FMN N/A GO:0004312 ... P34731 41043416
    953452 9d48:Q (2.66) BS01 FMN N/A GO:0004312 ... P34731 41043416
    953453 9d48:W (2.66) BS01 FMN N/A GO:0004312 ... P34731 41043416
    953454 9d49:A (2.65) BS01 FMN N/A GO:0004312 ... P07149 41043416
    953455 9d49:B (2.65) BS01 PKZ N/A GO:0000287 ... P19097 41043416
    953456 9d49:E (2.65) BS01 FMN N/A GO:0004312 ... P07149 41043416
    953457 9d49:F (2.65) BS01 PKZ N/A GO:0000287 ... P19097 41043416
    953458 9d49:I (2.65) BS01 FMN N/A GO:0004312 ... P07149 41043416
    953459 9d49:J (2.65) BS01 PKZ N/A GO:0000287 ... P19097 41043416
    953460 9d49:M (2.65) BS01 FMN N/A GO:0004312 ... P07149 41043416
    953461 9d49:N (2.65) BS01 PKZ N/A GO:0000287 ... P19097 41043416
    953462 9d49:Q (2.65) BS01 FMN N/A GO:0004312 ... P07149 41043416
    953463 9d49:R (2.65) BS01 PKZ N/A GO:0000287 ... P19097 41043416
    953464 9d49:U (2.65) BS01 FMN N/A GO:0004312 ... P07149 41043416
    953465 9d49:V (2.65) BS01 PKZ N/A GO:0000287 ... P19097 41043416
    953466 9d4a:A (2.61) BS01 FMN N/A GO:0004312 ... P07149 41043416
    953467 9d4a:B (2.61) BS01 SXO N/A GO:0000287 ... P19097 41043416
    953468 9d4a:E (2.61) BS01 FMN N/A GO:0004312 ... P07149 41043416
    953469 9d4a:F (2.61) BS01 SXO N/A GO:0000287 ... P19097 41043416
    953470 9d4a:I (2.61) BS01 FMN N/A GO:0004312 ... P07149 41043416
    953471 9d4a:J (2.61) BS01 SXO N/A GO:0000287 ... P19097 41043416
    953472 9d4a:M (2.61) BS01 FMN N/A GO:0004312 ... P07149 41043416
    953473 9d4a:N (2.61) BS01 SXO N/A GO:0000287 ... P19097 41043416
    953474 9d4a:Q (2.61) BS01 FMN N/A GO:0004312 ... P07149 41043416
    953475 9d4a:R (2.61) BS01 SXO N/A GO:0000287 ... P19097 41043416
    953476 9d4a:U (2.61) BS01 FMN N/A GO:0004312 ... P07149 41043416
    953477 9d4a:V (2.61) BS01 SXO N/A GO:0000287 ... P19097 41043416
    953478 9d4b:A (3.3) BS01 A1A1U N/A N/A P40337 N/A
    953479 9d4b:D (3.3) BS01 A1A1U N/A N/A P40337 N/A
    953480 9d4b:G (3.3) BS01 A1A1U N/A GO:0006338 ... B4DNT1 N/A
    953481 9d4b:H (3.3) BS01 A1A1U N/A GO:0006338 ... B4DNT1 N/A
    953482 9d4d:A (2.36) BS01 A1A10 N/A GO:0004252 ... O00187 40010268
    953483 9d4e:A (1.7) BS01 A1A1Q N/A GO:0016567 ... Q9Y4B6 N/A
    953484 9d4e:B (1.7) BS01 A1A1Q N/A GO:0016567 ... Q9Y4B6 N/A
    953485 9d4n:A (2.9) BS01 dna N/A GO:0000150 ... P25453 41371341
    953486 9d4n:A (2.9) BS02 ATP N/A GO:0000150 ... P25453 41371341
    953487 9d4n:A (2.9) BS03 MG N/A GO:0000150 ... P25453 41371341
    953488 9d4n:B (2.9) BS01 dna N/A GO:0000150 ... P25453 41371341
    953489 9d4n:B (2.9) BS02 ATP N/A GO:0000150 ... P25453 41371341
    953490 9d4n:B (2.9) BS03 ATP N/A GO:0000150 ... P25453 41371341
    953491 9d4n:B (2.9) BS04 MG N/A GO:0000150 ... P25453 41371341
    953492 9d4n:B (2.9) BS05 MG N/A GO:0000150 ... P25453 41371341
    953493 9d4n:C (2.9) BS01 dna N/A GO:0000150 ... P25453 41371341
    953494 9d4n:C (2.9) BS02 ATP N/A GO:0000150 ... P25453 41371341
    953495 9d4n:C (2.9) BS03 ATP N/A GO:0000150 ... P25453 41371341
    953496 9d4n:C (2.9) BS04 MG N/A GO:0000150 ... P25453 41371341
    953497 9d4n:D (2.9) BS01 dna N/A GO:0000150 ... P25453 41371341
    953498 9d4n:D (2.9) BS02 ATP N/A GO:0000150 ... P25453 41371341
    953499 9d4n:D (2.9) BS03 ATP N/A GO:0000150 ... P25453 41371341
    953500 9d4n:D (2.9) BS04 MG N/A GO:0000150 ... P25453 41371341
    953501 9d4n:D (2.9) BS05 MG N/A GO:0000150 ... P25453 41371341
    953502 9d4n:E (2.9) BS01 dna N/A GO:0000150 ... P25453 41371341
    953503 9d4n:E (2.9) BS02 ATP N/A GO:0000150 ... P25453 41371341
    953504 9d4n:E (2.9) BS03 ATP N/A GO:0000150 ... P25453 41371341
    953505 9d4n:E (2.9) BS04 MG N/A GO:0000150 ... P25453 41371341
    953506 9d4n:E (2.9) BS05 MG N/A GO:0000150 ... P25453 41371341
    953507 9d4n:F (2.9) BS01 dna N/A GO:0000150 ... P25453 41371341
    953508 9d4n:F (2.9) BS02 ATP N/A GO:0000150 ... P25453 41371341
    953509 9d4n:F (2.9) BS03 ATP N/A GO:0000150 ... P25453 41371341
    953510 9d4n:F (2.9) BS04 MG N/A GO:0000150 ... P25453 41371341
    953511 9d4n:F (2.9) BS05 MG N/A GO:0000150 ... P25453 41371341
    953512 9d4s:A (2.77) BS01 dna N/A N/A N/A 40729381
    953513 9d4s:A (2.77) BS02 MN N/A N/A N/A 40729381
    953514 9d4s:A (2.77) BS03 DCP N/A N/A N/A 40729381
    953515 9d4s:B (2.77) BS01 dna N/A N/A N/A 40729381
    953516 9d4s:B (2.77) BS02 MN N/A N/A N/A 40729381
    953517 9d4s:B (2.77) BS03 DCP N/A N/A N/A 40729381
    953518 9d4v:A (1.84) BS01 A1A2P N/A GO:0004672 ... Q13153 40516764
    953519 9d4v:B (1.84) BS01 A1A2P N/A GO:0004672 ... Q13153 40516764
    953520 9d4w:A (2.218) BS01 A1A2Q N/A GO:0004672 ... Q13153 40516764
    953521 9d4w:B (2.218) BS01 A1A2Q N/A GO:0004672 ... Q13153 40516764
    953522 9d4x:A (1.847) BS01 A1A2S N/A GO:0004672 ... Q13153 40516764
    953523 9d4x:B (1.847) BS01 A1A2S N/A GO:0004672 ... Q13153 40516764
    953524 9d4y:A (1.847) BS01 A1A2S N/A GO:0004672 ... Q13153 40516764
    953525 9d4y:B (1.847) BS01 A1A2S N/A GO:0004672 ... Q13153 40516764
    953526 9d4z:B (2.74) BS01 peptide N/A GO:0001750 ... P62873 40287415
    953527 9d50:A (1.898) BS01 A1A2T N/A GO:0004672 ... Q13153 40516764
    953528 9d50:B (1.898) BS01 A1A2T N/A GO:0004672 ... Q13153 40516764
    953529 9d51:A (2.1) BS01 A1A2Q N/A GO:0004672 ... Q13177 40516764
    953530 9d51:B (2.1) BS01 A1A2Q N/A GO:0004672 ... Q13177 40516764
    953531 9d52:A (2.449) BS01 A1A2R N/A GO:0004672 ... O96013 40516764
    953532 9d53:A (2.468) BS01 A1A2P N/A GO:0004672 ... O96013 40516764
    953533 9d54:A (1.6) BS01 A1A22 N/A N/A N/A 41835567
    953534 9d57:A (2.6) BS01 ABU N/A GO:0006091 ... N/A N/A
    953535 9d57:B (2.6) BS01 ABU N/A GO:0006091 ... N/A N/A
    953536 9d57:C (2.6) BS01 ABU N/A GO:0006091 ... N/A N/A
    953537 9d57:D (2.6) BS01 ABU N/A GO:0006091 ... N/A N/A
    953538 9d57:E (2.6) BS01 ABU N/A GO:0006091 ... N/A N/A
    953539 9d57:F (2.6) BS01 ABU N/A GO:0006091 ... N/A N/A
    953540 9d59:A (2.43) BS01 CA N/A N/A A0A5B0SRH6 40250427
    953541 9d59:A (2.43) BS02 CA N/A N/A A0A5B0SRH6 40250427
    953542 9d59:A (2.43) BS03 CA N/A N/A A0A5B0SRH6 40250427
    953543 9d59:A (2.43) BS04 CA N/A N/A A0A5B0SRH6 40250427
    953544 9d59:B (2.43) BS01 CA N/A N/A A0A5B0SRH6 40250427
    953545 9d59:B (2.43) BS02 CA N/A N/A A0A5B0SRH6 40250427
    953546 9d59:B (2.43) BS03 CA N/A N/A A0A5B0SRH6 40250427
    953547 9d59:B (2.43) BS04 CA N/A N/A A0A5B0SRH6 40250427
    953548 9d59:C (2.43) BS01 CA N/A N/A A0A5B0SRH6 40250427
    953549 9d59:C (2.43) BS02 CA N/A N/A A0A5B0SRH6 40250427
    953550 9d59:C (2.43) BS03 CA N/A N/A A0A5B0SRH6 40250427
    953551 9d59:C (2.43) BS04 CA N/A N/A A0A5B0SRH6 40250427
    953552 9d59:D (2.43) BS01 CA N/A N/A A0A5B0SRH6 40250427
    953553 9d59:D (2.43) BS02 CA N/A N/A A0A5B0SRH6 40250427
    953554 9d59:D (2.43) BS03 CA N/A N/A A0A5B0SRH6 40250427
    953555 9d59:D (2.43) BS04 CA N/A N/A A0A5B0SRH6 40250427
    953556 9d5a:A (2.73) BS01 CA N/A N/A A0A5B0SRH6 40250427
    953557 9d5a:A (2.73) BS02 CA N/A N/A A0A5B0SRH6 40250427
    953558 9d5a:A (2.73) BS03 CA N/A N/A A0A5B0SRH6 40250427
    953559 9d5a:A (2.73) BS04 CA N/A N/A A0A5B0SRH6 40250427
    953560 9d5a:A (2.73) BS05 CA N/A N/A A0A5B0SRH6 40250427
    953561 9d5b:A (3.08) BS01 CA N/A N/A A0AAJ1WXN4 40250427
    953562 9d5b:A (3.08) BS02 CA N/A N/A A0AAJ1WXN4 40250427
    953563 9d5b:B (3.08) BS01 CA N/A N/A A0AAJ1WXN4 40250427
    953564 9d5b:B (3.08) BS02 CA N/A N/A A0AAJ1WXN4 40250427
    953565 9d5b:C (3.08) BS01 CA N/A N/A A0AAJ1WXN4 40250427
    953566 9d5b:C (3.08) BS02 CA N/A N/A A0AAJ1WXN4 40250427
    953567 9d5b:D (3.08) BS01 CA N/A N/A A0AAJ1WXN4 40250427
    953568 9d5b:D (3.08) BS02 CA N/A N/A A0AAJ1WXN4 40250427
    953569 9d5e:A (1.5) BS01 IRE N/A GO:0004672 ... Q13418 N/A
    953570 9d5e:A (1.5) BS02 IRE N/A GO:0004672 ... Q13418 N/A
    953571 9d5f:A (1.5) BS01 DB8 N/A GO:0004672 ... Q13418 N/A
    953572 9d5g:AAAA (1.55) BS01 A1A2V N/A GO:0004672 ... Q13418 N/A
    953573 9d5h:A (1.5) BS01 IRE N/A GO:0004672 ... Q13418 N/A
    953574 9d5i:A (1.5) BS01 ATP N/A GO:0004672 ... Q13418 N/A
    953575 9d5j:A (2.8) BS01 rna N/A GO:0003723 ... P78563 39456162
    953576 9d5j:A (2.8) BS02 rna N/A GO:0003723 ... P78563 39456162
    953577 9d5j:A (2.8) BS03 IHP N/A GO:0003723 ... P78563 39456162
    953578 9d5j:A (2.8) BS04 ZN N/A GO:0003723 ... P78563 39456162
    953579 9d5j:B (2.8) BS01 rna N/A GO:0003723 ... P78563 39456162
    953580 9d5j:B (2.8) BS02 rna N/A GO:0003723 ... P78563 39456162
    953581 9d5j:B (2.8) BS03 IHP N/A GO:0003723 ... P78563 39456162
    953582 9d5j:B (2.8) BS04 ZN N/A GO:0003723 ... P78563 39456162
    953583 9d5k:A (2.697) BS01 rna N/A GO:0003723 ... P78563 39456162
    953584 9d5k:A (2.697) BS02 rna N/A GO:0003723 ... P78563 39456162
    953585 9d5k:A (2.697) BS03 IHP N/A GO:0003723 ... P78563 39456162
    953586 9d5k:A (2.697) BS04 ZN N/A GO:0003723 ... P78563 39456162
    953587 9d5k:B (2.697) BS01 rna N/A GO:0003723 ... P78563 39456162
    953588 9d5k:B (2.697) BS02 rna N/A GO:0003723 ... P78563 39456162
    953589 9d5k:B (2.697) BS03 IHP N/A GO:0003723 ... P78563 39456162
    953590 9d5k:B (2.697) BS04 ZN N/A GO:0003723 ... P78563 39456162
    953591 9d5l:A (2.8) BS01 dna N/A N/A A0AAW7DSP3 40498074
    953592 9d5n:0 (4.2) BS01 GDP N/A GO:0000226 ... A2DC16 40301421
    953593 9d5n:1 (4.2) BS01 GTP N/A GO:0000226 ... A2E8B1 40301421
    953594 9d5n:2 (4.2) BS01 GTP N/A GO:0000226 ... A2E8B1 40301421
    953595 9d5n:3 (4.2) BS01 GTP N/A GO:0000226 ... A2E8B1 40301421
    953596 9d5n:4 (4.2) BS01 GTP N/A GO:0000226 ... A2E8B1 40301421
    953597 9d5n:5 (4.2) BS01 MG N/A GO:0000226 ... A2E8B1 40301421
    953598 9d5n:5 (4.2) BS02 GTP N/A GO:0000226 ... A2E8B1 40301421
    953599 9d5n:6 (4.2) BS01 GTP N/A GO:0000226 ... A2E8B1 40301421
    953600 9d5n:7 (4.2) BS01 GDP N/A GO:0000226 ... A2DC16 40301421

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).