SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    954201 9d6d:P (2.18) BS02 QNG N/A GO:0016032 ... P12493 39416065
    954202 9d6d:P (2.18) BS03 QNG N/A GO:0016032 ... P12493 39416065
    954203 9d6d:P (2.18) BS04 QNG N/A GO:0016032 ... P12493 39416065
    954204 9d6d:Q (2.18) BS01 QNG N/A GO:0016032 ... P12493 39416065
    954205 9d6d:Q (2.18) BS02 QNG N/A GO:0016032 ... P12493 39416065
    954206 9d6d:R (2.18) BS01 IHP N/A GO:0016032 ... P12493 39416065
    954207 9d6d:R (2.18) BS02 QNG N/A GO:0016032 ... P12493 39416065
    954208 9d6e:J (3.09) BS01 IHP N/A GO:0016032 ... P12493 39416065
    954209 9d6e:P (3.09) BS01 IHP N/A GO:0016032 ... P12493 39416065
    954210 9d6g:A (1.0) BS01 A1A2F N/A N/A P0DTD1 40435250
    954211 9d6h:A (1.02) BS01 A1AJW N/A N/A P0DTD1 40435250
    954212 9d6i:A (0.97) BS01 A1A2G N/A N/A P0DTD1 40435250
    954213 9d6k:A (1.29) BS01 O N/A GO:0003824 ... Q7SID2 38677005
    954214 9d6l:A (3.1) BS01 A1A2B N/A GO:0005048 ... P61619 40669140
    954215 9d6n:A (2.43) BS01 dna N/A GO:0003676 ... O75417 41124685
    954216 9d6n:A (2.43) BS02 dna N/A GO:0003676 ... O75417 41124685
    954217 9d6n:A (2.43) BS03 MG N/A GO:0003676 ... O75417 41124685
    954218 9d6n:A (2.43) BS04 DG3 N/A GO:0003676 ... O75417 41124685
    954219 9d6n:A (2.43) BS05 A1A2C N/A GO:0003676 ... O75417 41124685
    954220 9d6n:B (2.43) BS01 dna N/A GO:0003676 ... O75417 41124685
    954221 9d6n:B (2.43) BS02 dna N/A GO:0003676 ... O75417 41124685
    954222 9d6n:B (2.43) BS03 MG N/A GO:0003676 ... O75417 41124685
    954223 9d6n:B (2.43) BS04 DG3 N/A GO:0003676 ... O75417 41124685
    954224 9d6n:B (2.43) BS05 A1A2C N/A GO:0003676 ... O75417 41124685
    954225 9d6o:A (3.31) BS01 dna N/A GO:0003676 ... O75417 41124685
    954226 9d6o:A (3.31) BS02 dna N/A GO:0003676 ... O75417 41124685
    954227 9d6o:A (3.31) BS03 MG N/A GO:0003676 ... O75417 41124685
    954228 9d6o:A (3.31) BS04 DG3 N/A GO:0003676 ... O75417 41124685
    954229 9d6o:A (3.31) BS05 A1A2D N/A GO:0003676 ... O75417 41124685
    954230 9d6p:A (2.13) BS01 A1IKD N/A GO:0000165 ... Q16539 N/A
    954231 9d6p:A (2.13) BS02 GG5 N/A GO:0000165 ... Q16539 N/A
    954232 9d6x:A (1.95) BS01 MTX N/A GO:0005515 ... Q14914 N/A
    954233 9d6x:B (1.95) BS01 MTX N/A GO:0005515 ... Q14914 N/A
    954234 9d6x:C (1.95) BS01 MTX N/A GO:0005515 ... Q14914 N/A
    954235 9d6x:D (1.95) BS01 MTX N/A GO:0005515 ... Q14914 N/A
    954236 9d6z:A (1.75) BS01 MTX N/A GO:0005515 ... Q14914 N/A
    954237 9d6z:B (1.75) BS01 MTX N/A GO:0005515 ... Q14914 N/A
    954238 9d71:A (2.0) BS01 MTX N/A GO:0005515 ... Q14914 N/A
    954239 9d71:B (2.0) BS01 MTX N/A GO:0005515 ... Q14914 N/A
    954240 9d71:C (2.0) BS01 MTX N/A GO:0005515 ... Q14914 N/A
    954241 9d72:A (2.67) BS01 peptide N/A N/A P01900 41629525
    954242 9d73:A (3.02) BS01 peptide N/A GO:0000139 ... Q860B7 41629525
    954243 9d74:A (3.31) BS01 peptide N/A GO:0000139 ... Q860B7 41629525
    954244 9d75:A (2.13) BS01 A1A2L N/A GO:0000165 ... Q16539 40779804
    954245 9d75:A (2.13) BS02 GG5 N/A GO:0000165 ... Q16539 40779804
    954246 9d77:A (3.4) BS01 CA N/A N/A Q90922 N/A
    954247 9d79:A (1.9) BS01 Y33 N/A GO:0008658 ... Q2TR58 39601221
    954248 9d79:B (1.9) BS01 Y33 N/A GO:0008658 ... Q2TR58 39601221
    954249 9d79:C (1.9) BS01 Y33 N/A GO:0008658 ... Q2TR58 39601221
    954250 9d7a:A (2.05) BS01 Y33 N/A GO:0008658 ... Q2TR58 39601221
    954251 9d7a:B (2.05) BS01 Y33 N/A GO:0008658 ... Q2TR58 39601221
    954252 9d7a:C (2.05) BS01 Y33 N/A GO:0008658 ... Q2TR58 39601221
    954253 9d7a:D (2.05) BS01 Y33 N/A GO:0008658 ... Q2TR58 39601221
    954254 9d7b:A (1.99) BS01 Y33 N/A GO:0008658 ... Q2TR58 39601221
    954255 9d7b:B (1.99) BS01 Y33 N/A GO:0008658 ... Q2TR58 39601221
    954256 9d7b:C (1.99) BS01 Y33 N/A GO:0008658 ... Q2TR58 39601221
    954257 9d7b:D (1.99) BS01 Y33 N/A GO:0008658 ... Q2TR58 39601221
    954258 9d7c:A (1.94) BS01 Y33 N/A GO:0008658 ... Q2TR58 39601221
    954259 9d7c:B (1.94) BS01 Y33 N/A GO:0008658 ... Q2TR58 39601221
    954260 9d7c:C (1.94) BS01 Y33 N/A GO:0008658 ... Q2TR58 39601221
    954261 9d7c:D (1.94) BS01 Y33 N/A GO:0008658 ... Q2TR58 39601221
    954262 9d7d:A (2.05) BS01 Y33 N/A GO:0008658 ... Q2TR58 39601221
    954263 9d7d:B (2.05) BS01 Y33 N/A GO:0008658 ... Q2TR58 39601221
    954264 9d7d:C (2.05) BS01 Y33 N/A GO:0008658 ... Q2TR58 39601221
    954265 9d7d:D (2.05) BS01 Y33 N/A GO:0008658 ... Q2TR58 39601221
    954266 9d7j:A (1.39) BS01 NAP N/A N/A Q97TU5 40537411
    954267 9d7j:B (1.39) BS01 NAP N/A N/A Q97TU5 40537411
    954268 9d7l:A (1.68) BS01 A1BC6 N/A GO:0003842 ... F7X6I3 39870289
    954269 9d7l:B (1.68) BS01 A1BC6 N/A GO:0003842 ... F7X6I3 39870289
    954270 9d7n:A (1.973) BS01 A1A2O N/A GO:0000165 ... Q16539 40779804
    954271 9d7n:A (1.973) BS02 GG5 N/A GO:0000165 ... Q16539 40779804
    954272 9d7r:10 (2.7) BS01 rna N/A GO:0003735 ... P60493 39415050
    954273 9d7r:10 (2.7) BS02 rna N/A GO:0003735 ... P60493 39415050
    954274 9d7r:10 (2.7) BS03 MG N/A GO:0003735 ... P60493 39415050
    954275 9d7r:10 (2.7) BS04 MG N/A GO:0003735 ... P60493 39415050
    954276 9d7r:11 (2.7) BS01 rna N/A GO:0003735 ... P60494 39415050
    954277 9d7r:11 (2.7) BS02 rna N/A GO:0003735 ... P60494 39415050
    954278 9d7r:11 (2.7) BS03 MG N/A GO:0003735 ... P60494 39415050
    954279 9d7r:12 (2.7) BS01 rna N/A GO:0003735 ... Q5SHP6 39415050
    954280 9d7r:13 (2.7) BS01 rna N/A GO:0003735 ... Q5SHQ6 39415050
    954281 9d7r:13 (2.7) BS02 rna N/A GO:0003735 ... Q5SHQ6 39415050
    954282 9d7r:13 (2.7) BS03 MG N/A GO:0003735 ... Q5SHQ6 39415050
    954283 9d7r:14 (2.7) BS01 rna N/A GO:0003735 ... Q5SJE1 39415050
    954284 9d7r:14 (2.7) BS02 ZN N/A GO:0003735 ... Q5SJE1 39415050
    954285 9d7r:15 (2.7) BS01 rna N/A GO:0003735 ... P80339 39415050
    954286 9d7r:15 (2.7) BS02 MG N/A GO:0003735 ... P80339 39415050
    954287 9d7r:15 (2.7) BS03 MG N/A GO:0003735 ... P80339 39415050
    954288 9d7r:15 (2.7) BS04 ZN N/A GO:0003735 ... P80339 39415050
    954289 9d7r:16 (2.7) BS01 rna N/A GO:0003735 ... P35871 39415050
    954290 9d7r:16 (2.7) BS02 MG N/A GO:0003735 ... P35871 39415050
    954291 9d7r:16 (2.7) BS03 ZN N/A GO:0003735 ... P35871 39415050
    954292 9d7r:17 (2.7) BS01 rna N/A GO:0003735 ... P80340 39415050
    954293 9d7r:17 (2.7) BS02 MG N/A GO:0003735 ... P80340 39415050
    954294 9d7r:17 (2.7) BS03 MG N/A GO:0003735 ... P80340 39415050
    954295 9d7r:17 (2.7) BS04 MG N/A GO:0003735 ... P80340 39415050
    954296 9d7r:17 (2.7) BS05 MG N/A GO:0003735 ... P80340 39415050
    954297 9d7r:18 (2.7) BS01 rna N/A GO:0003735 ... Q5SKU1 39415050
    954298 9d7r:18 (2.7) BS02 MG N/A GO:0003735 ... Q5SKU1 39415050
    954299 9d7r:18 (2.7) BS03 MG N/A GO:0003735 ... Q5SKU1 39415050
    954300 9d7r:19 (2.7) BS01 rna N/A GO:0003735 ... Q5SHR2 39415050
    954301 9d7r:19 (2.7) BS02 ZN N/A GO:0003735 ... Q5SHR2 39415050
    954302 9d7r:1D (2.7) BS01 rna N/A GO:0002181 ... P60405 39415050
    954303 9d7r:1D (2.7) BS02 MG N/A GO:0002181 ... P60405 39415050
    954304 9d7r:1D (2.7) BS03 MG N/A GO:0002181 ... P60405 39415050
    954305 9d7r:1D (2.7) BS04 MG N/A GO:0002181 ... P60405 39415050
    954306 9d7r:1D (2.7) BS05 MG N/A GO:0002181 ... P60405 39415050
    954307 9d7r:1D (2.7) BS06 MG N/A GO:0002181 ... P60405 39415050
    954308 9d7r:1E (2.7) BS01 rna N/A GO:0003735 ... Q5SHN8 39415050
    954309 9d7r:1E (2.7) BS02 MG N/A GO:0003735 ... Q5SHN8 39415050
    954310 9d7r:1E (2.7) BS03 MG N/A GO:0003735 ... Q5SHN8 39415050
    954311 9d7r:1F (2.7) BS01 rna N/A GO:0003735 ... Q5SHN9 39415050
    954312 9d7r:1F (2.7) BS02 MG N/A GO:0003735 ... Q5SHN9 39415050
    954313 9d7r:1F (2.7) BS03 MG N/A GO:0003735 ... Q5SHN9 39415050
    954314 9d7r:1F (2.7) BS04 MG N/A GO:0003735 ... Q5SHN9 39415050
    954315 9d7r:1F (2.7) BS05 MG N/A GO:0003735 ... Q5SHN9 39415050
    954316 9d7r:1F (2.7) BS06 MG N/A GO:0003735 ... Q5SHN9 39415050
    954317 9d7r:1F (2.7) BS07 MG N/A GO:0003735 ... Q5SHN9 39415050
    954318 9d7r:1F (2.7) BS08 MG N/A GO:0003735 ... Q5SHN9 39415050
    954319 9d7r:1G (2.7) BS01 rna N/A GO:0000049 ... Q5SHQ0 39415050
    954320 9d7r:1G (2.7) BS02 rna N/A GO:0000049 ... Q5SHQ0 39415050
    954321 9d7r:1G (2.7) BS03 rna N/A GO:0000049 ... Q5SHQ0 39415050
    954322 9d7r:1G (2.7) BS04 MG N/A GO:0000049 ... Q5SHQ0 39415050
    954323 9d7r:1H (2.7) BS01 rna N/A GO:0002181 ... P0DOY8 39415050
    954324 9d7r:1I (2.7) BS01 rna N/A GO:0003735 ... Q5SLQ1 39415050
    954325 9d7r:1N (2.7) BS01 rna N/A GO:0003729 ... P60488 39415050
    954326 9d7r:1N (2.7) BS02 MG N/A GO:0003729 ... P60488 39415050
    954327 9d7r:1N (2.7) BS03 MG N/A GO:0003729 ... P60488 39415050
    954328 9d7r:1O (2.7) BS01 rna N/A GO:0003735 ... Q5SHP8 39415050
    954329 9d7r:1O (2.7) BS02 rna N/A GO:0003735 ... Q5SHP8 39415050
    954330 9d7r:1P (2.7) BS01 rna N/A GO:0003735 ... Q5SHQ7 39415050
    954331 9d7r:1P (2.7) BS02 MG N/A GO:0003735 ... Q5SHQ7 39415050
    954332 9d7r:1P (2.7) BS03 MG N/A GO:0003735 ... Q5SHQ7 39415050
    954333 9d7r:1Q (2.7) BS01 rna N/A GO:0003735 ... P60489 39415050
    954334 9d7r:1Q (2.7) BS02 rna N/A GO:0003735 ... P60489 39415050
    954335 9d7r:1Q (2.7) BS03 MG N/A GO:0003735 ... P60489 39415050
    954336 9d7r:1Q (2.7) BS04 MG N/A GO:0003735 ... P60489 39415050
    954337 9d7r:1R (2.7) BS01 rna N/A GO:0003735 ... Q9Z9H5 39415050
    954338 9d7r:1R (2.7) BS02 MG N/A GO:0003735 ... Q9Z9H5 39415050
    954339 9d7r:1R (2.7) BS03 MG N/A GO:0003735 ... Q9Z9H5 39415050
    954340 9d7r:1S (2.7) BS01 rna N/A GO:0003735 ... Q5SHQ4 39415050
    954341 9d7r:1S (2.7) BS02 rna N/A GO:0003735 ... Q5SHQ4 39415050
    954342 9d7r:1T (2.7) BS01 rna N/A GO:0003735 ... P60490 39415050
    954343 9d7r:1T (2.7) BS02 rna N/A GO:0003735 ... P60490 39415050
    954344 9d7r:1U (2.7) BS01 rna N/A GO:0000027 ... P60491 39415050
    954345 9d7r:1U (2.7) BS02 MG N/A GO:0000027 ... P60491 39415050
    954346 9d7r:1U (2.7) BS03 MG N/A GO:0000027 ... P60491 39415050
    954347 9d7r:1U (2.7) BS04 MG N/A GO:0000027 ... P60491 39415050
    954348 9d7r:1U (2.7) BS05 MG N/A GO:0000027 ... P60491 39415050
    954349 9d7r:1U (2.7) BS06 MG N/A GO:0000027 ... P60491 39415050
    954350 9d7r:1U (2.7) BS07 MG N/A GO:0000027 ... P60491 39415050
    954351 9d7r:1U (2.7) BS08 MG N/A GO:0000027 ... P60491 39415050
    954352 9d7r:1V (2.7) BS01 rna N/A GO:0003723 ... P60492 39415050
    954353 9d7r:1V (2.7) BS02 MG N/A GO:0003723 ... P60492 39415050
    954354 9d7r:1V (2.7) BS03 MG N/A GO:0003723 ... P60492 39415050
    954355 9d7r:1V (2.7) BS04 MG N/A GO:0003723 ... P60492 39415050
    954356 9d7r:1W (2.7) BS01 rna N/A GO:0003735 ... Q5SHP3 39415050
    954357 9d7r:1W (2.7) BS02 MG N/A GO:0003735 ... Q5SHP3 39415050
    954358 9d7r:1X (2.7) BS01 rna N/A GO:0003735 ... Q5SHP0 39415050
    954359 9d7r:1Y (2.7) BS01 rna N/A GO:0003723 ... Q5SHP9 39415050
    954360 9d7r:1Y (2.7) BS02 ZN N/A GO:0003723 ... Q5SHP9 39415050
    954361 9d7r:1Z (2.7) BS01 rna N/A GO:0003723 ... Q5SHZ1 39415050
    954362 9d7r:1Z (2.7) BS02 rna N/A GO:0003723 ... Q5SHZ1 39415050
    954363 9d7r:1b (2.7) BS01 rna N/A GO:0003735 ... P80371 39415050
    954364 9d7r:1c (2.7) BS01 rna N/A GO:0003676 ... P80372 39415050
    954365 9d7r:1d (2.7) BS01 rna N/A GO:0003723 ... P80373 39415050
    954366 9d7r:1d (2.7) BS02 SF4 N/A GO:0003723 ... P80373 39415050
    954367 9d7r:1e (2.7) BS01 rna N/A GO:0003723 ... Q5SHQ5 39415050
    954368 9d7r:1f (2.7) BS01 rna N/A GO:0003735 ... Q5SLP8 39415050
    954369 9d7r:1f (2.7) BS02 MG N/A GO:0003735 ... Q5SLP8 39415050
    954370 9d7r:1g (2.7) BS01 rna N/A GO:0000049 ... P17291 39415050
    954371 9d7r:1g (2.7) BS02 rna N/A GO:0000049 ... P17291 39415050
    954372 9d7r:1h (2.7) BS01 rna N/A GO:0003735 ... P0DOY9 39415050
    954373 9d7r:1i (2.7) BS01 rna N/A GO:0003723 ... P80374 39415050
    954374 9d7r:1i (2.7) BS02 rna N/A GO:0003723 ... P80374 39415050
    954375 9d7r:1j (2.7) BS01 rna N/A GO:0000049 ... Q5SHN7 39415050
    954376 9d7r:1k (2.7) BS01 rna N/A GO:0003735 ... P80376 39415050
    954377 9d7r:1k (2.7) BS02 MG N/A GO:0003735 ... P80376 39415050
    954378 9d7r:1l (2.7) BS01 rna N/A GO:0000049 ... Q5SHN3 39415050
    954379 9d7r:1m (2.7) BS01 rna N/A GO:0000049 ... P80377 39415050
    954380 9d7r:1m (2.7) BS02 rna N/A GO:0000049 ... P80377 39415050
    954381 9d7r:1m (2.7) BS03 MG N/A GO:0000049 ... P80377 39415050
    954382 9d7r:1n (2.7) BS01 rna N/A GO:0003735 ... P0DOY6 39415050
    954383 9d7r:1n (2.7) BS02 ZN N/A GO:0003735 ... P0DOY6 39415050
    954384 9d7r:1o (2.7) BS01 rna N/A GO:0003735 ... Q5SJ76 39415050
    954385 9d7r:1o (2.7) BS02 rna N/A GO:0003735 ... Q5SJ76 39415050
    954386 9d7r:1p (2.7) BS01 rna N/A GO:0003735 ... Q5SJH3 39415050
    954387 9d7r:1q (2.7) BS01 rna N/A GO:0003735 ... P0DOY7 39415050
    954388 9d7r:1r (2.7) BS01 rna N/A GO:0003735 ... Q5SLQ0 39415050
    954389 9d7r:1s (2.7) BS01 rna N/A GO:0000028 ... Q5SHP2 39415050
    954390 9d7r:1t (2.7) BS01 rna N/A GO:0003723 ... P80380 39415050
    954391 9d7r:1w (2.7) BS01 rna N/A GO:0003747 ... P96077 39415050
    954392 9d7r:1w (2.7) BS02 rna N/A GO:0003747 ... P96077 39415050
    954393 9d7r:1w (2.7) BS03 rna N/A GO:0003747 ... P96077 39415050
    954394 9d7r:1w (2.7) BS04 rna N/A GO:0003747 ... P96077 39415050
    954395 9d7r:1w (2.7) BS05 peptide N/A GO:0003747 ... P96077 39415050
    954396 9d7r:1w (2.7) BS06 MG N/A GO:0003747 ... P96077 39415050
    954397 9d7r:20 (2.7) BS01 rna N/A GO:0003735 ... P60493 39415050
    954398 9d7r:21 (2.7) BS01 rna N/A GO:0003735 ... P60494 39415050
    954399 9d7r:22 (2.7) BS01 rna N/A GO:0003735 ... Q5SHP6 39415050
    954400 9d7r:23 (2.7) BS01 rna N/A GO:0003735 ... Q5SHQ6 39415050

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).