SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    954401 9d7r:23 (2.7) BS02 rna N/A GO:0003735 ... Q5SHQ6 39415050
    954402 9d7r:24 (2.7) BS01 rna N/A GO:0003735 ... Q5SJE1 39415050
    954403 9d7r:24 (2.7) BS02 ZN N/A GO:0003735 ... Q5SJE1 39415050
    954404 9d7r:25 (2.7) BS01 rna N/A GO:0003735 ... P80339 39415050
    954405 9d7r:25 (2.7) BS02 ZN N/A GO:0003735 ... P80339 39415050
    954406 9d7r:26 (2.7) BS01 rna N/A GO:0003735 ... P35871 39415050
    954407 9d7r:26 (2.7) BS02 MG N/A GO:0003735 ... P35871 39415050
    954408 9d7r:26 (2.7) BS03 ZN N/A GO:0003735 ... P35871 39415050
    954409 9d7r:27 (2.7) BS01 rna N/A GO:0003735 ... P80340 39415050
    954410 9d7r:28 (2.7) BS01 rna N/A GO:0003735 ... Q5SKU1 39415050
    954411 9d7r:29 (2.7) BS01 rna N/A GO:0003735 ... Q5SHR2 39415050
    954412 9d7r:29 (2.7) BS02 ZN N/A GO:0003735 ... Q5SHR2 39415050
    954413 9d7r:2D (2.7) BS01 rna N/A GO:0002181 ... P60405 39415050
    954414 9d7r:2D (2.7) BS02 rna N/A GO:0002181 ... P60405 39415050
    954415 9d7r:2D (2.7) BS03 MG N/A GO:0002181 ... P60405 39415050
    954416 9d7r:2D (2.7) BS04 MG N/A GO:0002181 ... P60405 39415050
    954417 9d7r:2D (2.7) BS05 MG N/A GO:0002181 ... P60405 39415050
    954418 9d7r:2D (2.7) BS06 MG N/A GO:0002181 ... P60405 39415050
    954419 9d7r:2D (2.7) BS07 MG N/A GO:0002181 ... P60405 39415050
    954420 9d7r:2E (2.7) BS01 rna N/A GO:0003735 ... Q5SHN8 39415050
    954421 9d7r:2E (2.7) BS02 MG N/A GO:0003735 ... Q5SHN8 39415050
    954422 9d7r:2E (2.7) BS03 MG N/A GO:0003735 ... Q5SHN8 39415050
    954423 9d7r:2E (2.7) BS04 MG N/A GO:0003735 ... Q5SHN8 39415050
    954424 9d7r:2F (2.7) BS01 rna N/A GO:0003735 ... Q5SHN9 39415050
    954425 9d7r:2F (2.7) BS02 MG N/A GO:0003735 ... Q5SHN9 39415050
    954426 9d7r:2F (2.7) BS03 MG N/A GO:0003735 ... Q5SHN9 39415050
    954427 9d7r:2F (2.7) BS04 MG N/A GO:0003735 ... Q5SHN9 39415050
    954428 9d7r:2F (2.7) BS05 MG N/A GO:0003735 ... Q5SHN9 39415050
    954429 9d7r:2G (2.7) BS01 rna N/A GO:0000049 ... Q5SHQ0 39415050
    954430 9d7r:2G (2.7) BS02 rna N/A GO:0000049 ... Q5SHQ0 39415050
    954431 9d7r:2G (2.7) BS03 rna N/A GO:0000049 ... Q5SHQ0 39415050
    954432 9d7r:2H (2.7) BS01 rna N/A GO:0002181 ... P0DOY8 39415050
    954433 9d7r:2I (2.7) BS01 rna N/A GO:0003735 ... Q5SLQ1 39415050
    954434 9d7r:2N (2.7) BS01 rna N/A GO:0003729 ... P60488 39415050
    954435 9d7r:2O (2.7) BS01 rna N/A GO:0003735 ... Q5SHP8 39415050
    954436 9d7r:2O (2.7) BS02 rna N/A GO:0003735 ... Q5SHP8 39415050
    954437 9d7r:2P (2.7) BS01 rna N/A GO:0003735 ... Q5SHQ7 39415050
    954438 9d7r:2P (2.7) BS02 MG N/A GO:0003735 ... Q5SHQ7 39415050
    954439 9d7r:2Q (2.7) BS01 rna N/A GO:0003735 ... P60489 39415050
    954440 9d7r:2Q (2.7) BS02 rna N/A GO:0003735 ... P60489 39415050
    954441 9d7r:2Q (2.7) BS03 MG N/A GO:0003735 ... P60489 39415050
    954442 9d7r:2R (2.7) BS01 rna N/A GO:0003735 ... Q9Z9H5 39415050
    954443 9d7r:2R (2.7) BS02 MG N/A GO:0003735 ... Q9Z9H5 39415050
    954444 9d7r:2S (2.7) BS01 rna N/A GO:0003735 ... Q5SHQ4 39415050
    954445 9d7r:2S (2.7) BS02 rna N/A GO:0003735 ... Q5SHQ4 39415050
    954446 9d7r:2T (2.7) BS01 rna N/A GO:0003735 ... P60490 39415050
    954447 9d7r:2T (2.7) BS02 rna N/A GO:0003735 ... P60490 39415050
    954448 9d7r:2U (2.7) BS01 rna N/A GO:0000027 ... P60491 39415050
    954449 9d7r:2U (2.7) BS02 MG N/A GO:0000027 ... P60491 39415050
    954450 9d7r:2V (2.7) BS01 rna N/A GO:0003723 ... P60492 39415050
    954451 9d7r:2V (2.7) BS02 MG N/A GO:0003723 ... P60492 39415050
    954452 9d7r:2V (2.7) BS03 MG N/A GO:0003723 ... P60492 39415050
    954453 9d7r:2W (2.7) BS01 rna N/A GO:0003735 ... Q5SHP3 39415050
    954454 9d7r:2W (2.7) BS02 MG N/A GO:0003735 ... Q5SHP3 39415050
    954455 9d7r:2X (2.7) BS01 rna N/A GO:0003735 ... Q5SHP0 39415050
    954456 9d7r:2X (2.7) BS02 MG N/A GO:0003735 ... Q5SHP0 39415050
    954457 9d7r:2Y (2.7) BS01 rna N/A GO:0003723 ... Q5SHP9 39415050
    954458 9d7r:2Y (2.7) BS02 ZN N/A GO:0003723 ... Q5SHP9 39415050
    954459 9d7r:2Z (2.7) BS01 rna N/A GO:0003723 ... Q5SHZ1 39415050
    954460 9d7r:2Z (2.7) BS02 rna N/A GO:0003723 ... Q5SHZ1 39415050
    954461 9d7r:2b (2.7) BS01 rna N/A GO:0003735 ... P80371 39415050
    954462 9d7r:2c (2.7) BS01 rna N/A GO:0003676 ... P80372 39415050
    954463 9d7r:2d (2.7) BS01 rna N/A GO:0003723 ... P80373 39415050
    954464 9d7r:2d (2.7) BS02 SF4 N/A GO:0003723 ... P80373 39415050
    954465 9d7r:2e (2.7) BS01 rna N/A GO:0003723 ... Q5SHQ5 39415050
    954466 9d7r:2e (2.7) BS02 MG N/A GO:0003723 ... Q5SHQ5 39415050
    954467 9d7r:2f (2.7) BS01 rna N/A GO:0003735 ... Q5SLP8 39415050
    954468 9d7r:2g (2.7) BS01 rna N/A GO:0000049 ... P17291 39415050
    954469 9d7r:2g (2.7) BS02 rna N/A GO:0000049 ... P17291 39415050
    954470 9d7r:2h (2.7) BS01 rna N/A GO:0003735 ... P0DOY9 39415050
    954471 9d7r:2i (2.7) BS01 rna N/A GO:0003723 ... P80374 39415050
    954472 9d7r:2i (2.7) BS02 rna N/A GO:0003723 ... P80374 39415050
    954473 9d7r:2j (2.7) BS01 rna N/A GO:0000049 ... Q5SHN7 39415050
    954474 9d7r:2k (2.7) BS01 rna N/A GO:0003735 ... P80376 39415050
    954475 9d7r:2k (2.7) BS02 MG N/A GO:0003735 ... P80376 39415050
    954476 9d7r:2l (2.7) BS01 rna N/A GO:0000049 ... Q5SHN3 39415050
    954477 9d7r:2m (2.7) BS01 rna N/A GO:0000049 ... P80377 39415050
    954478 9d7r:2n (2.7) BS01 rna N/A GO:0003735 ... P0DOY6 39415050
    954479 9d7r:2n (2.7) BS02 ZN N/A GO:0003735 ... P0DOY6 39415050
    954480 9d7r:2o (2.7) BS01 rna N/A GO:0003735 ... Q5SJ76 39415050
    954481 9d7r:2o (2.7) BS02 rna N/A GO:0003735 ... Q5SJ76 39415050
    954482 9d7r:2p (2.7) BS01 rna N/A GO:0003735 ... Q5SJH3 39415050
    954483 9d7r:2q (2.7) BS01 rna N/A GO:0003735 ... P0DOY7 39415050
    954484 9d7r:2r (2.7) BS01 rna N/A GO:0003735 ... Q5SLQ0 39415050
    954485 9d7r:2s (2.7) BS01 rna N/A GO:0000028 ... Q5SHP2 39415050
    954486 9d7r:2t (2.7) BS01 rna N/A GO:0003723 ... P80380 39415050
    954487 9d7r:2t (2.7) BS02 MG N/A GO:0003723 ... P80380 39415050
    954488 9d7r:2w (2.7) BS01 rna N/A GO:0003747 ... P96077 39415050
    954489 9d7r:2w (2.7) BS02 rna N/A GO:0003747 ... P96077 39415050
    954490 9d7r:2w (2.7) BS03 rna N/A GO:0003747 ... P96077 39415050
    954491 9d7r:2w (2.7) BS04 rna N/A GO:0003747 ... P96077 39415050
    954492 9d7r:2w (2.7) BS05 peptide N/A GO:0003747 ... P96077 39415050
    954493 9d7r:2w (2.7) BS06 MG N/A GO:0003747 ... P96077 39415050
    954494 9d7s:10 (2.85) BS01 rna N/A GO:0003735 ... P60493 39415050
    954495 9d7s:10 (2.85) BS02 rna N/A GO:0003735 ... P60493 39415050
    954496 9d7s:10 (2.85) BS03 MG N/A GO:0003735 ... P60493 39415050
    954497 9d7s:10 (2.85) BS04 MG N/A GO:0003735 ... P60493 39415050
    954498 9d7s:11 (2.85) BS01 rna N/A GO:0003735 ... P60494 39415050
    954499 9d7s:11 (2.85) BS02 MG N/A GO:0003735 ... P60494 39415050
    954500 9d7s:12 (2.85) BS01 rna N/A GO:0003735 ... Q5SHP6 39415050
    954501 9d7s:12 (2.85) BS02 MG N/A GO:0003735 ... Q5SHP6 39415050
    954502 9d7s:13 (2.85) BS01 rna N/A GO:0003735 ... Q5SHQ6 39415050
    954503 9d7s:13 (2.85) BS02 rna N/A GO:0003735 ... Q5SHQ6 39415050
    954504 9d7s:13 (2.85) BS03 MG N/A GO:0003735 ... Q5SHQ6 39415050
    954505 9d7s:14 (2.85) BS01 rna N/A GO:0003735 ... Q5SJE1 39415050
    954506 9d7s:14 (2.85) BS02 ZN N/A GO:0003735 ... Q5SJE1 39415050
    954507 9d7s:15 (2.85) BS01 rna N/A GO:0003735 ... P80339 39415050
    954508 9d7s:15 (2.85) BS02 MG N/A GO:0003735 ... P80339 39415050
    954509 9d7s:15 (2.85) BS03 MG N/A GO:0003735 ... P80339 39415050
    954510 9d7s:15 (2.85) BS04 MG N/A GO:0003735 ... P80339 39415050
    954511 9d7s:15 (2.85) BS05 ZN N/A GO:0003735 ... P80339 39415050
    954512 9d7s:16 (2.85) BS01 rna N/A GO:0003735 ... P35871 39415050
    954513 9d7s:16 (2.85) BS02 MG N/A GO:0003735 ... P35871 39415050
    954514 9d7s:16 (2.85) BS03 ZN N/A GO:0003735 ... P35871 39415050
    954515 9d7s:17 (2.85) BS01 rna N/A GO:0003735 ... P80340 39415050
    954516 9d7s:17 (2.85) BS02 MG N/A GO:0003735 ... P80340 39415050
    954517 9d7s:17 (2.85) BS03 MG N/A GO:0003735 ... P80340 39415050
    954518 9d7s:17 (2.85) BS04 MG N/A GO:0003735 ... P80340 39415050
    954519 9d7s:17 (2.85) BS05 MG N/A GO:0003735 ... P80340 39415050
    954520 9d7s:17 (2.85) BS06 MG N/A GO:0003735 ... P80340 39415050
    954521 9d7s:18 (2.85) BS01 rna N/A GO:0003735 ... Q5SKU1 39415050
    954522 9d7s:18 (2.85) BS02 MG N/A GO:0003735 ... Q5SKU1 39415050
    954523 9d7s:19 (2.85) BS01 rna N/A GO:0003735 ... Q5SHR2 39415050
    954524 9d7s:19 (2.85) BS02 ZN N/A GO:0003735 ... Q5SHR2 39415050
    954525 9d7s:1D (2.85) BS01 rna N/A GO:0002181 ... P60405 39415050
    954526 9d7s:1D (2.85) BS02 MG N/A GO:0002181 ... P60405 39415050
    954527 9d7s:1D (2.85) BS03 MG N/A GO:0002181 ... P60405 39415050
    954528 9d7s:1D (2.85) BS04 MG N/A GO:0002181 ... P60405 39415050
    954529 9d7s:1D (2.85) BS05 MG N/A GO:0002181 ... P60405 39415050
    954530 9d7s:1D (2.85) BS06 MG N/A GO:0002181 ... P60405 39415050
    954531 9d7s:1D (2.85) BS07 MG N/A GO:0002181 ... P60405 39415050
    954532 9d7s:1E (2.85) BS01 rna N/A GO:0003735 ... Q5SHN8 39415050
    954533 9d7s:1E (2.85) BS02 MG N/A GO:0003735 ... Q5SHN8 39415050
    954534 9d7s:1E (2.85) BS03 MG N/A GO:0003735 ... Q5SHN8 39415050
    954535 9d7s:1F (2.85) BS01 rna N/A GO:0003735 ... Q5SHN9 39415050
    954536 9d7s:1F (2.85) BS02 MG N/A GO:0003735 ... Q5SHN9 39415050
    954537 9d7s:1F (2.85) BS03 MG N/A GO:0003735 ... Q5SHN9 39415050
    954538 9d7s:1F (2.85) BS04 MG N/A GO:0003735 ... Q5SHN9 39415050
    954539 9d7s:1F (2.85) BS05 MG N/A GO:0003735 ... Q5SHN9 39415050
    954540 9d7s:1F (2.85) BS06 MG N/A GO:0003735 ... Q5SHN9 39415050
    954541 9d7s:1F (2.85) BS07 MG N/A GO:0003735 ... Q5SHN9 39415050
    954542 9d7s:1F (2.85) BS08 MG N/A GO:0003735 ... Q5SHN9 39415050
    954543 9d7s:1F (2.85) BS09 MG N/A GO:0003735 ... Q5SHN9 39415050
    954544 9d7s:1F (2.85) BS10 MG N/A GO:0003735 ... Q5SHN9 39415050
    954545 9d7s:1G (2.85) BS01 rna N/A GO:0000049 ... Q5SHQ0 39415050
    954546 9d7s:1G (2.85) BS02 rna N/A GO:0000049 ... Q5SHQ0 39415050
    954547 9d7s:1G (2.85) BS03 rna N/A GO:0000049 ... Q5SHQ0 39415050
    954548 9d7s:1H (2.85) BS01 rna N/A GO:0002181 ... P0DOY8 39415050
    954549 9d7s:1I (2.85) BS01 rna N/A GO:0003735 ... Q5SLQ1 39415050
    954550 9d7s:1N (2.85) BS01 rna N/A GO:0003729 ... P60488 39415050
    954551 9d7s:1N (2.85) BS02 MG N/A GO:0003729 ... P60488 39415050
    954552 9d7s:1N (2.85) BS03 MG N/A GO:0003729 ... P60488 39415050
    954553 9d7s:1O (2.85) BS01 rna N/A GO:0003735 ... Q5SHP8 39415050
    954554 9d7s:1O (2.85) BS02 rna N/A GO:0003735 ... Q5SHP8 39415050
    954555 9d7s:1P (2.85) BS01 rna N/A GO:0003735 ... Q5SHQ7 39415050
    954556 9d7s:1P (2.85) BS02 MG N/A GO:0003735 ... Q5SHQ7 39415050
    954557 9d7s:1P (2.85) BS03 MG N/A GO:0003735 ... Q5SHQ7 39415050
    954558 9d7s:1Q (2.85) BS01 rna N/A GO:0003735 ... P60489 39415050
    954559 9d7s:1Q (2.85) BS02 rna N/A GO:0003735 ... P60489 39415050
    954560 9d7s:1Q (2.85) BS03 MG N/A GO:0003735 ... P60489 39415050
    954561 9d7s:1Q (2.85) BS04 MG N/A GO:0003735 ... P60489 39415050
    954562 9d7s:1Q (2.85) BS05 MG N/A GO:0003735 ... P60489 39415050
    954563 9d7s:1R (2.85) BS01 rna N/A GO:0003735 ... Q9Z9H5 39415050
    954564 9d7s:1R (2.85) BS02 MG N/A GO:0003735 ... Q9Z9H5 39415050
    954565 9d7s:1S (2.85) BS01 rna N/A GO:0003735 ... Q5SHQ4 39415050
    954566 9d7s:1S (2.85) BS02 rna N/A GO:0003735 ... Q5SHQ4 39415050
    954567 9d7s:1T (2.85) BS01 rna N/A GO:0003735 ... P60490 39415050
    954568 9d7s:1T (2.85) BS02 rna N/A GO:0003735 ... P60490 39415050
    954569 9d7s:1U (2.85) BS01 rna N/A GO:0000027 ... P60491 39415050
    954570 9d7s:1U (2.85) BS02 MG N/A GO:0000027 ... P60491 39415050
    954571 9d7s:1U (2.85) BS03 MG N/A GO:0000027 ... P60491 39415050
    954572 9d7s:1U (2.85) BS04 MG N/A GO:0000027 ... P60491 39415050
    954573 9d7s:1U (2.85) BS05 MG N/A GO:0000027 ... P60491 39415050
    954574 9d7s:1U (2.85) BS06 MG N/A GO:0000027 ... P60491 39415050
    954575 9d7s:1U (2.85) BS07 MG N/A GO:0000027 ... P60491 39415050
    954576 9d7s:1V (2.85) BS01 rna N/A GO:0003723 ... P60492 39415050
    954577 9d7s:1V (2.85) BS02 MG N/A GO:0003723 ... P60492 39415050
    954578 9d7s:1V (2.85) BS03 MG N/A GO:0003723 ... P60492 39415050
    954579 9d7s:1V (2.85) BS04 MG N/A GO:0003723 ... P60492 39415050
    954580 9d7s:1V (2.85) BS05 MG N/A GO:0003723 ... P60492 39415050
    954581 9d7s:1V (2.85) BS06 MG N/A GO:0003723 ... P60492 39415050
    954582 9d7s:1W (2.85) BS01 rna N/A GO:0003735 ... Q5SHP3 39415050
    954583 9d7s:1W (2.85) BS02 MG N/A GO:0003735 ... Q5SHP3 39415050
    954584 9d7s:1W (2.85) BS03 MG N/A GO:0003735 ... Q5SHP3 39415050
    954585 9d7s:1W (2.85) BS04 MG N/A GO:0003735 ... Q5SHP3 39415050
    954586 9d7s:1X (2.85) BS01 rna N/A GO:0003735 ... Q5SHP0 39415050
    954587 9d7s:1X (2.85) BS02 MG N/A GO:0003735 ... Q5SHP0 39415050
    954588 9d7s:1Y (2.85) BS01 rna N/A GO:0003723 ... Q5SHP9 39415050
    954589 9d7s:1Y (2.85) BS02 ZN N/A GO:0003723 ... Q5SHP9 39415050
    954590 9d7s:1Z (2.85) BS01 rna N/A GO:0003723 ... Q5SHZ1 39415050
    954591 9d7s:1Z (2.85) BS02 rna N/A GO:0003723 ... Q5SHZ1 39415050
    954592 9d7s:1b (2.85) BS01 rna N/A GO:0003735 ... P80371 39415050
    954593 9d7s:1c (2.85) BS01 rna N/A GO:0003676 ... P80372 39415050
    954594 9d7s:1d (2.85) BS01 rna N/A GO:0003723 ... P80373 39415050
    954595 9d7s:1d (2.85) BS02 SF4 N/A GO:0003723 ... P80373 39415050
    954596 9d7s:1e (2.85) BS01 rna N/A GO:0003723 ... Q5SHQ5 39415050
    954597 9d7s:1f (2.85) BS01 rna N/A GO:0003735 ... Q5SLP8 39415050
    954598 9d7s:1g (2.85) BS01 rna N/A GO:0000049 ... P17291 39415050
    954599 9d7s:1g (2.85) BS02 rna N/A GO:0000049 ... P17291 39415050
    954600 9d7s:1h (2.85) BS01 rna N/A GO:0003735 ... P0DOY9 39415050

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).