SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    954601 9d7s:1i (2.85) BS01 rna N/A GO:0003723 ... P80374 39415050
    954602 9d7s:1i (2.85) BS02 rna N/A GO:0003723 ... P80374 39415050
    954603 9d7s:1j (2.85) BS01 rna N/A GO:0000049 ... Q5SHN7 39415050
    954604 9d7s:1k (2.85) BS01 rna N/A GO:0003735 ... P80376 39415050
    954605 9d7s:1k (2.85) BS02 MG N/A GO:0003735 ... P80376 39415050
    954606 9d7s:1l (2.85) BS01 rna N/A GO:0000049 ... Q5SHN3 39415050
    954607 9d7s:1m (2.85) BS01 rna N/A GO:0000049 ... P80377 39415050
    954608 9d7s:1m (2.85) BS02 rna N/A GO:0000049 ... P80377 39415050
    954609 9d7s:1m (2.85) BS03 rna N/A GO:0000049 ... P80377 39415050
    954610 9d7s:1m (2.85) BS04 MG N/A GO:0000049 ... P80377 39415050
    954611 9d7s:1n (2.85) BS01 rna N/A GO:0003735 ... P0DOY6 39415050
    954612 9d7s:1n (2.85) BS02 MG N/A GO:0003735 ... P0DOY6 39415050
    954613 9d7s:1n (2.85) BS03 ZN N/A GO:0003735 ... P0DOY6 39415050
    954614 9d7s:1o (2.85) BS01 rna N/A GO:0003735 ... Q5SJ76 39415050
    954615 9d7s:1o (2.85) BS02 rna N/A GO:0003735 ... Q5SJ76 39415050
    954616 9d7s:1p (2.85) BS01 rna N/A GO:0003735 ... Q5SJH3 39415050
    954617 9d7s:1q (2.85) BS01 rna N/A GO:0003735 ... P0DOY7 39415050
    954618 9d7s:1r (2.85) BS01 rna N/A GO:0003735 ... Q5SLQ0 39415050
    954619 9d7s:1s (2.85) BS01 rna N/A GO:0000028 ... Q5SHP2 39415050
    954620 9d7s:1t (2.85) BS01 rna N/A GO:0003723 ... P80380 39415050
    954621 9d7s:1w (2.85) BS01 rna N/A GO:0003747 ... P96077 39415050
    954622 9d7s:1w (2.85) BS02 rna N/A GO:0003747 ... P96077 39415050
    954623 9d7s:1w (2.85) BS03 rna N/A GO:0003747 ... P96077 39415050
    954624 9d7s:1w (2.85) BS04 rna N/A GO:0003747 ... P96077 39415050
    954625 9d7s:1w (2.85) BS05 peptide N/A GO:0003747 ... P96077 39415050
    954626 9d7s:1w (2.85) BS06 MG N/A GO:0003747 ... P96077 39415050
    954627 9d7s:1w (2.85) BS07 MG N/A GO:0003747 ... P96077 39415050
    954628 9d7s:20 (2.85) BS01 rna N/A GO:0003735 ... P60493 39415050
    954629 9d7s:20 (2.85) BS02 rna N/A GO:0003735 ... P60493 39415050
    954630 9d7s:21 (2.85) BS01 rna N/A GO:0003735 ... P60494 39415050
    954631 9d7s:22 (2.85) BS01 rna N/A GO:0003735 ... Q5SHP6 39415050
    954632 9d7s:23 (2.85) BS01 rna N/A GO:0003735 ... Q5SHQ6 39415050
    954633 9d7s:23 (2.85) BS02 rna N/A GO:0003735 ... Q5SHQ6 39415050
    954634 9d7s:24 (2.85) BS01 rna N/A GO:0003735 ... Q5SJE1 39415050
    954635 9d7s:24 (2.85) BS02 ZN N/A GO:0003735 ... Q5SJE1 39415050
    954636 9d7s:25 (2.85) BS01 rna N/A GO:0003735 ... P80339 39415050
    954637 9d7s:25 (2.85) BS02 ZN N/A GO:0003735 ... P80339 39415050
    954638 9d7s:26 (2.85) BS01 rna N/A GO:0003735 ... P35871 39415050
    954639 9d7s:26 (2.85) BS02 MG N/A GO:0003735 ... P35871 39415050
    954640 9d7s:26 (2.85) BS03 ZN N/A GO:0003735 ... P35871 39415050
    954641 9d7s:27 (2.85) BS01 rna N/A GO:0003735 ... P80340 39415050
    954642 9d7s:28 (2.85) BS01 rna N/A GO:0003735 ... Q5SKU1 39415050
    954643 9d7s:29 (2.85) BS01 rna N/A GO:0003735 ... Q5SHR2 39415050
    954644 9d7s:29 (2.85) BS02 ZN N/A GO:0003735 ... Q5SHR2 39415050
    954645 9d7s:2D (2.85) BS01 rna N/A GO:0002181 ... P60405 39415050
    954646 9d7s:2D (2.85) BS02 rna N/A GO:0002181 ... P60405 39415050
    954647 9d7s:2D (2.85) BS03 MG N/A GO:0002181 ... P60405 39415050
    954648 9d7s:2D (2.85) BS04 MG N/A GO:0002181 ... P60405 39415050
    954649 9d7s:2D (2.85) BS05 MG N/A GO:0002181 ... P60405 39415050
    954650 9d7s:2D (2.85) BS06 MG N/A GO:0002181 ... P60405 39415050
    954651 9d7s:2D (2.85) BS07 MG N/A GO:0002181 ... P60405 39415050
    954652 9d7s:2E (2.85) BS01 rna N/A GO:0003735 ... Q5SHN8 39415050
    954653 9d7s:2E (2.85) BS02 MG N/A GO:0003735 ... Q5SHN8 39415050
    954654 9d7s:2E (2.85) BS03 MG N/A GO:0003735 ... Q5SHN8 39415050
    954655 9d7s:2E (2.85) BS04 MG N/A GO:0003735 ... Q5SHN8 39415050
    954656 9d7s:2F (2.85) BS01 rna N/A GO:0003735 ... Q5SHN9 39415050
    954657 9d7s:2F (2.85) BS02 MG N/A GO:0003735 ... Q5SHN9 39415050
    954658 9d7s:2F (2.85) BS03 MG N/A GO:0003735 ... Q5SHN9 39415050
    954659 9d7s:2F (2.85) BS04 MG N/A GO:0003735 ... Q5SHN9 39415050
    954660 9d7s:2F (2.85) BS05 MG N/A GO:0003735 ... Q5SHN9 39415050
    954661 9d7s:2G (2.85) BS01 rna N/A GO:0000049 ... Q5SHQ0 39415050
    954662 9d7s:2G (2.85) BS02 rna N/A GO:0000049 ... Q5SHQ0 39415050
    954663 9d7s:2G (2.85) BS03 rna N/A GO:0000049 ... Q5SHQ0 39415050
    954664 9d7s:2H (2.85) BS01 rna N/A GO:0002181 ... P0DOY8 39415050
    954665 9d7s:2I (2.85) BS01 rna N/A GO:0003735 ... Q5SLQ1 39415050
    954666 9d7s:2N (2.85) BS01 rna N/A GO:0003729 ... P60488 39415050
    954667 9d7s:2O (2.85) BS01 rna N/A GO:0003735 ... Q5SHP8 39415050
    954668 9d7s:2O (2.85) BS02 rna N/A GO:0003735 ... Q5SHP8 39415050
    954669 9d7s:2P (2.85) BS01 rna N/A GO:0003735 ... Q5SHQ7 39415050
    954670 9d7s:2P (2.85) BS02 MG N/A GO:0003735 ... Q5SHQ7 39415050
    954671 9d7s:2Q (2.85) BS01 rna N/A GO:0003735 ... P60489 39415050
    954672 9d7s:2Q (2.85) BS02 rna N/A GO:0003735 ... P60489 39415050
    954673 9d7s:2Q (2.85) BS03 MG N/A GO:0003735 ... P60489 39415050
    954674 9d7s:2R (2.85) BS01 rna N/A GO:0003735 ... Q9Z9H5 39415050
    954675 9d7s:2S (2.85) BS01 rna N/A GO:0003735 ... Q5SHQ4 39415050
    954676 9d7s:2S (2.85) BS02 rna N/A GO:0003735 ... Q5SHQ4 39415050
    954677 9d7s:2T (2.85) BS01 rna N/A GO:0003735 ... P60490 39415050
    954678 9d7s:2T (2.85) BS02 rna N/A GO:0003735 ... P60490 39415050
    954679 9d7s:2U (2.85) BS01 rna N/A GO:0000027 ... P60491 39415050
    954680 9d7s:2U (2.85) BS02 MG N/A GO:0000027 ... P60491 39415050
    954681 9d7s:2V (2.85) BS01 rna N/A GO:0003723 ... P60492 39415050
    954682 9d7s:2V (2.85) BS02 MG N/A GO:0003723 ... P60492 39415050
    954683 9d7s:2W (2.85) BS01 rna N/A GO:0003735 ... Q5SHP3 39415050
    954684 9d7s:2X (2.85) BS01 rna N/A GO:0003735 ... Q5SHP0 39415050
    954685 9d7s:2X (2.85) BS02 MG N/A GO:0003735 ... Q5SHP0 39415050
    954686 9d7s:2Y (2.85) BS01 rna N/A GO:0003723 ... Q5SHP9 39415050
    954687 9d7s:2Y (2.85) BS02 ZN N/A GO:0003723 ... Q5SHP9 39415050
    954688 9d7s:2Z (2.85) BS01 rna N/A GO:0003723 ... Q5SHZ1 39415050
    954689 9d7s:2Z (2.85) BS02 rna N/A GO:0003723 ... Q5SHZ1 39415050
    954690 9d7s:2b (2.85) BS01 rna N/A GO:0003735 ... P80371 39415050
    954691 9d7s:2c (2.85) BS01 rna N/A GO:0003676 ... P80372 39415050
    954692 9d7s:2d (2.85) BS01 rna N/A GO:0003723 ... P80373 39415050
    954693 9d7s:2d (2.85) BS02 SF4 N/A GO:0003723 ... P80373 39415050
    954694 9d7s:2e (2.85) BS01 rna N/A GO:0003723 ... Q5SHQ5 39415050
    954695 9d7s:2e (2.85) BS02 MG N/A GO:0003723 ... Q5SHQ5 39415050
    954696 9d7s:2e (2.85) BS03 MG N/A GO:0003723 ... Q5SHQ5 39415050
    954697 9d7s:2f (2.85) BS01 rna N/A GO:0003735 ... Q5SLP8 39415050
    954698 9d7s:2f (2.85) BS02 MG N/A GO:0003735 ... Q5SLP8 39415050
    954699 9d7s:2g (2.85) BS01 rna N/A GO:0000049 ... P17291 39415050
    954700 9d7s:2g (2.85) BS02 rna N/A GO:0000049 ... P17291 39415050
    954701 9d7s:2h (2.85) BS01 rna N/A GO:0003735 ... P0DOY9 39415050
    954702 9d7s:2i (2.85) BS01 rna N/A GO:0003723 ... P80374 39415050
    954703 9d7s:2i (2.85) BS02 rna N/A GO:0003723 ... P80374 39415050
    954704 9d7s:2j (2.85) BS01 rna N/A GO:0000049 ... Q5SHN7 39415050
    954705 9d7s:2k (2.85) BS01 rna N/A GO:0003735 ... P80376 39415050
    954706 9d7s:2k (2.85) BS02 MG N/A GO:0003735 ... P80376 39415050
    954707 9d7s:2l (2.85) BS01 rna N/A GO:0000049 ... Q5SHN3 39415050
    954708 9d7s:2m (2.85) BS01 rna N/A GO:0000049 ... P80377 39415050
    954709 9d7s:2n (2.85) BS01 rna N/A GO:0003735 ... P0DOY6 39415050
    954710 9d7s:2n (2.85) BS02 ZN N/A GO:0003735 ... P0DOY6 39415050
    954711 9d7s:2o (2.85) BS01 rna N/A GO:0003735 ... Q5SJ76 39415050
    954712 9d7s:2o (2.85) BS02 rna N/A GO:0003735 ... Q5SJ76 39415050
    954713 9d7s:2p (2.85) BS01 rna N/A GO:0003735 ... Q5SJH3 39415050
    954714 9d7s:2q (2.85) BS01 rna N/A GO:0003735 ... P0DOY7 39415050
    954715 9d7s:2r (2.85) BS01 rna N/A GO:0003735 ... Q5SLQ0 39415050
    954716 9d7s:2s (2.85) BS01 rna N/A GO:0000028 ... Q5SHP2 39415050
    954717 9d7s:2t (2.85) BS01 rna N/A GO:0003723 ... P80380 39415050
    954718 9d7s:2t (2.85) BS02 MG N/A GO:0003723 ... P80380 39415050
    954719 9d7s:2w (2.85) BS01 rna N/A GO:0003747 ... P96077 39415050
    954720 9d7s:2w (2.85) BS02 rna N/A GO:0003747 ... P96077 39415050
    954721 9d7s:2w (2.85) BS03 rna N/A GO:0003747 ... P96077 39415050
    954722 9d7s:2w (2.85) BS04 rna N/A GO:0003747 ... P96077 39415050
    954723 9d7s:2w (2.85) BS05 peptide N/A GO:0003747 ... P96077 39415050
    954724 9d7t:10 (2.7) BS01 rna N/A GO:0003735 ... P60493 39415050
    954725 9d7t:10 (2.7) BS02 rna N/A GO:0003735 ... P60493 39415050
    954726 9d7t:10 (2.7) BS03 MG N/A GO:0003735 ... P60493 39415050
    954727 9d7t:10 (2.7) BS04 MG N/A GO:0003735 ... P60493 39415050
    954728 9d7t:11 (2.7) BS01 rna N/A GO:0003735 ... P60494 39415050
    954729 9d7t:11 (2.7) BS02 MG N/A GO:0003735 ... P60494 39415050
    954730 9d7t:12 (2.7) BS01 rna N/A GO:0003735 ... Q5SHP6 39415050
    954731 9d7t:13 (2.7) BS01 rna N/A GO:0003735 ... Q5SHQ6 39415050
    954732 9d7t:13 (2.7) BS02 rna N/A GO:0003735 ... Q5SHQ6 39415050
    954733 9d7t:14 (2.7) BS01 rna N/A GO:0003735 ... Q5SJE1 39415050
    954734 9d7t:14 (2.7) BS02 ZN N/A GO:0003735 ... Q5SJE1 39415050
    954735 9d7t:15 (2.7) BS01 rna N/A GO:0003735 ... P80339 39415050
    954736 9d7t:15 (2.7) BS02 MG N/A GO:0003735 ... P80339 39415050
    954737 9d7t:15 (2.7) BS03 MG N/A GO:0003735 ... P80339 39415050
    954738 9d7t:15 (2.7) BS04 ZN N/A GO:0003735 ... P80339 39415050
    954739 9d7t:16 (2.7) BS01 rna N/A GO:0003735 ... P35871 39415050
    954740 9d7t:16 (2.7) BS02 MG N/A GO:0003735 ... P35871 39415050
    954741 9d7t:16 (2.7) BS03 ZN N/A GO:0003735 ... P35871 39415050
    954742 9d7t:17 (2.7) BS01 rna N/A GO:0003735 ... P80340 39415050
    954743 9d7t:17 (2.7) BS02 MG N/A GO:0003735 ... P80340 39415050
    954744 9d7t:17 (2.7) BS03 MG N/A GO:0003735 ... P80340 39415050
    954745 9d7t:17 (2.7) BS04 MG N/A GO:0003735 ... P80340 39415050
    954746 9d7t:18 (2.7) BS01 rna N/A GO:0003735 ... Q5SKU1 39415050
    954747 9d7t:19 (2.7) BS01 rna N/A GO:0003735 ... Q5SHR2 39415050
    954748 9d7t:19 (2.7) BS02 ZN N/A GO:0003735 ... Q5SHR2 39415050
    954749 9d7t:1D (2.7) BS01 rna N/A GO:0002181 ... P60405 39415050
    954750 9d7t:1D (2.7) BS02 MG N/A GO:0002181 ... P60405 39415050
    954751 9d7t:1D (2.7) BS03 MG N/A GO:0002181 ... P60405 39415050
    954752 9d7t:1D (2.7) BS04 MG N/A GO:0002181 ... P60405 39415050
    954753 9d7t:1D (2.7) BS05 MG N/A GO:0002181 ... P60405 39415050
    954754 9d7t:1D (2.7) BS06 MG N/A GO:0002181 ... P60405 39415050
    954755 9d7t:1E (2.7) BS01 rna N/A GO:0003735 ... Q5SHN8 39415050
    954756 9d7t:1E (2.7) BS02 MG N/A GO:0003735 ... Q5SHN8 39415050
    954757 9d7t:1E (2.7) BS03 MG N/A GO:0003735 ... Q5SHN8 39415050
    954758 9d7t:1F (2.7) BS01 rna N/A GO:0003735 ... Q5SHN9 39415050
    954759 9d7t:1F (2.7) BS02 MG N/A GO:0003735 ... Q5SHN9 39415050
    954760 9d7t:1F (2.7) BS03 MG N/A GO:0003735 ... Q5SHN9 39415050
    954761 9d7t:1F (2.7) BS04 MG N/A GO:0003735 ... Q5SHN9 39415050
    954762 9d7t:1F (2.7) BS05 MG N/A GO:0003735 ... Q5SHN9 39415050
    954763 9d7t:1F (2.7) BS06 MG N/A GO:0003735 ... Q5SHN9 39415050
    954764 9d7t:1F (2.7) BS07 MG N/A GO:0003735 ... Q5SHN9 39415050
    954765 9d7t:1F (2.7) BS08 MG N/A GO:0003735 ... Q5SHN9 39415050
    954766 9d7t:1F (2.7) BS09 MG N/A GO:0003735 ... Q5SHN9 39415050
    954767 9d7t:1F (2.7) BS10 MG N/A GO:0003735 ... Q5SHN9 39415050
    954768 9d7t:1G (2.7) BS01 rna N/A GO:0000049 ... Q5SHQ0 39415050
    954769 9d7t:1G (2.7) BS02 rna N/A GO:0000049 ... Q5SHQ0 39415050
    954770 9d7t:1G (2.7) BS03 rna N/A GO:0000049 ... Q5SHQ0 39415050
    954771 9d7t:1G (2.7) BS04 MG N/A GO:0000049 ... Q5SHQ0 39415050
    954772 9d7t:1H (2.7) BS01 rna N/A GO:0002181 ... P0DOY8 39415050
    954773 9d7t:1I (2.7) BS01 rna N/A GO:0003735 ... Q5SLQ1 39415050
    954774 9d7t:1N (2.7) BS01 rna N/A GO:0003729 ... P60488 39415050
    954775 9d7t:1N (2.7) BS02 MG N/A GO:0003729 ... P60488 39415050
    954776 9d7t:1N (2.7) BS03 MG N/A GO:0003729 ... P60488 39415050
    954777 9d7t:1N (2.7) BS04 MG N/A GO:0003729 ... P60488 39415050
    954778 9d7t:1O (2.7) BS01 rna N/A GO:0003735 ... Q5SHP8 39415050
    954779 9d7t:1O (2.7) BS02 rna N/A GO:0003735 ... Q5SHP8 39415050
    954780 9d7t:1P (2.7) BS01 rna N/A GO:0003735 ... Q5SHQ7 39415050
    954781 9d7t:1P (2.7) BS02 MG N/A GO:0003735 ... Q5SHQ7 39415050
    954782 9d7t:1P (2.7) BS03 MG N/A GO:0003735 ... Q5SHQ7 39415050
    954783 9d7t:1Q (2.7) BS01 rna N/A GO:0003735 ... P60489 39415050
    954784 9d7t:1Q (2.7) BS02 rna N/A GO:0003735 ... P60489 39415050
    954785 9d7t:1Q (2.7) BS03 MG N/A GO:0003735 ... P60489 39415050
    954786 9d7t:1Q (2.7) BS04 MG N/A GO:0003735 ... P60489 39415050
    954787 9d7t:1Q (2.7) BS05 MG N/A GO:0003735 ... P60489 39415050
    954788 9d7t:1R (2.7) BS01 rna N/A GO:0003735 ... Q9Z9H5 39415050
    954789 9d7t:1R (2.7) BS02 MG N/A GO:0003735 ... Q9Z9H5 39415050
    954790 9d7t:1S (2.7) BS01 rna N/A GO:0003735 ... Q5SHQ4 39415050
    954791 9d7t:1S (2.7) BS02 rna N/A GO:0003735 ... Q5SHQ4 39415050
    954792 9d7t:1T (2.7) BS01 rna N/A GO:0003735 ... P60490 39415050
    954793 9d7t:1T (2.7) BS02 rna N/A GO:0003735 ... P60490 39415050
    954794 9d7t:1U (2.7) BS01 rna N/A GO:0000027 ... P60491 39415050
    954795 9d7t:1U (2.7) BS02 MG N/A GO:0000027 ... P60491 39415050
    954796 9d7t:1U (2.7) BS03 MG N/A GO:0000027 ... P60491 39415050
    954797 9d7t:1U (2.7) BS04 MG N/A GO:0000027 ... P60491 39415050
    954798 9d7t:1U (2.7) BS05 MG N/A GO:0000027 ... P60491 39415050
    954799 9d7t:1U (2.7) BS06 MG N/A GO:0000027 ... P60491 39415050
    954800 9d7t:1V (2.7) BS01 rna N/A GO:0003723 ... P60492 39415050

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).