SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    954801 9d7t:1V (2.7) BS02 MG N/A GO:0003723 ... P60492 39415050
    954802 9d7t:1V (2.7) BS03 MG N/A GO:0003723 ... P60492 39415050
    954803 9d7t:1V (2.7) BS04 MG N/A GO:0003723 ... P60492 39415050
    954804 9d7t:1V (2.7) BS05 MG N/A GO:0003723 ... P60492 39415050
    954805 9d7t:1V (2.7) BS06 MG N/A GO:0003723 ... P60492 39415050
    954806 9d7t:1W (2.7) BS01 rna N/A GO:0003735 ... Q5SHP3 39415050
    954807 9d7t:1W (2.7) BS02 MG N/A GO:0003735 ... Q5SHP3 39415050
    954808 9d7t:1X (2.7) BS01 rna N/A GO:0003735 ... Q5SHP0 39415050
    954809 9d7t:1Y (2.7) BS01 rna N/A GO:0003723 ... Q5SHP9 39415050
    954810 9d7t:1Y (2.7) BS02 ZN N/A GO:0003723 ... Q5SHP9 39415050
    954811 9d7t:1Z (2.7) BS01 rna N/A GO:0003723 ... Q5SHZ1 39415050
    954812 9d7t:1Z (2.7) BS02 rna N/A GO:0003723 ... Q5SHZ1 39415050
    954813 9d7t:1b (2.7) BS01 rna N/A GO:0003735 ... P80371 39415050
    954814 9d7t:1c (2.7) BS01 rna N/A GO:0003676 ... P80372 39415050
    954815 9d7t:1d (2.7) BS01 rna N/A GO:0003723 ... P80373 39415050
    954816 9d7t:1d (2.7) BS02 SF4 N/A GO:0003723 ... P80373 39415050
    954817 9d7t:1e (2.7) BS01 rna N/A GO:0003723 ... Q5SHQ5 39415050
    954818 9d7t:1f (2.7) BS01 rna N/A GO:0003735 ... Q5SLP8 39415050
    954819 9d7t:1f (2.7) BS02 MG N/A GO:0003735 ... Q5SLP8 39415050
    954820 9d7t:1g (2.7) BS01 rna N/A GO:0000049 ... P17291 39415050
    954821 9d7t:1g (2.7) BS02 rna N/A GO:0000049 ... P17291 39415050
    954822 9d7t:1h (2.7) BS01 rna N/A GO:0003735 ... P0DOY9 39415050
    954823 9d7t:1i (2.7) BS01 rna N/A GO:0003723 ... P80374 39415050
    954824 9d7t:1i (2.7) BS02 rna N/A GO:0003723 ... P80374 39415050
    954825 9d7t:1j (2.7) BS01 rna N/A GO:0000049 ... Q5SHN7 39415050
    954826 9d7t:1k (2.7) BS01 rna N/A GO:0003735 ... P80376 39415050
    954827 9d7t:1k (2.7) BS02 MG N/A GO:0003735 ... P80376 39415050
    954828 9d7t:1l (2.7) BS01 rna N/A GO:0000049 ... Q5SHN3 39415050
    954829 9d7t:1m (2.7) BS01 rna N/A GO:0000049 ... P80377 39415050
    954830 9d7t:1m (2.7) BS02 rna N/A GO:0000049 ... P80377 39415050
    954831 9d7t:1m (2.7) BS03 MG N/A GO:0000049 ... P80377 39415050
    954832 9d7t:1n (2.7) BS01 rna N/A GO:0003735 ... P0DOY6 39415050
    954833 9d7t:1n (2.7) BS02 MG N/A GO:0003735 ... P0DOY6 39415050
    954834 9d7t:1n (2.7) BS03 ZN N/A GO:0003735 ... P0DOY6 39415050
    954835 9d7t:1o (2.7) BS01 rna N/A GO:0003735 ... Q5SJ76 39415050
    954836 9d7t:1o (2.7) BS02 rna N/A GO:0003735 ... Q5SJ76 39415050
    954837 9d7t:1p (2.7) BS01 rna N/A GO:0003735 ... Q5SJH3 39415050
    954838 9d7t:1q (2.7) BS01 rna N/A GO:0003735 ... P0DOY7 39415050
    954839 9d7t:1r (2.7) BS01 rna N/A GO:0003735 ... Q5SLQ0 39415050
    954840 9d7t:1s (2.7) BS01 rna N/A GO:0000028 ... Q5SHP2 39415050
    954841 9d7t:1t (2.7) BS01 rna N/A GO:0003723 ... P80380 39415050
    954842 9d7t:1w (2.7) BS01 rna N/A GO:0003747 ... P96077 39415050
    954843 9d7t:1w (2.7) BS02 rna N/A GO:0003747 ... P96077 39415050
    954844 9d7t:1w (2.7) BS03 rna N/A GO:0003747 ... P96077 39415050
    954845 9d7t:1w (2.7) BS04 rna N/A GO:0003747 ... P96077 39415050
    954846 9d7t:1w (2.7) BS05 peptide N/A GO:0003747 ... P96077 39415050
    954847 9d7t:1w (2.7) BS06 MG N/A GO:0003747 ... P96077 39415050
    954848 9d7t:1w (2.7) BS07 MG N/A GO:0003747 ... P96077 39415050
    954849 9d7t:20 (2.7) BS01 rna N/A GO:0003735 ... P60493 39415050
    954850 9d7t:20 (2.7) BS02 rna N/A GO:0003735 ... P60493 39415050
    954851 9d7t:21 (2.7) BS01 rna N/A GO:0003735 ... P60494 39415050
    954852 9d7t:21 (2.7) BS02 MG N/A GO:0003735 ... P60494 39415050
    954853 9d7t:22 (2.7) BS01 rna N/A GO:0003735 ... Q5SHP6 39415050
    954854 9d7t:23 (2.7) BS01 rna N/A GO:0003735 ... Q5SHQ6 39415050
    954855 9d7t:23 (2.7) BS02 rna N/A GO:0003735 ... Q5SHQ6 39415050
    954856 9d7t:24 (2.7) BS01 rna N/A GO:0003735 ... Q5SJE1 39415050
    954857 9d7t:24 (2.7) BS02 ZN N/A GO:0003735 ... Q5SJE1 39415050
    954858 9d7t:25 (2.7) BS01 rna N/A GO:0003735 ... P80339 39415050
    954859 9d7t:25 (2.7) BS02 ZN N/A GO:0003735 ... P80339 39415050
    954860 9d7t:26 (2.7) BS01 rna N/A GO:0003735 ... P35871 39415050
    954861 9d7t:26 (2.7) BS02 ZN N/A GO:0003735 ... P35871 39415050
    954862 9d7t:27 (2.7) BS01 rna N/A GO:0003735 ... P80340 39415050
    954863 9d7t:28 (2.7) BS01 rna N/A GO:0003735 ... Q5SKU1 39415050
    954864 9d7t:29 (2.7) BS01 rna N/A GO:0003735 ... Q5SHR2 39415050
    954865 9d7t:29 (2.7) BS02 ZN N/A GO:0003735 ... Q5SHR2 39415050
    954866 9d7t:2D (2.7) BS01 rna N/A GO:0002181 ... P60405 39415050
    954867 9d7t:2D (2.7) BS02 rna N/A GO:0002181 ... P60405 39415050
    954868 9d7t:2D (2.7) BS03 MG N/A GO:0002181 ... P60405 39415050
    954869 9d7t:2D (2.7) BS04 MG N/A GO:0002181 ... P60405 39415050
    954870 9d7t:2D (2.7) BS05 MG N/A GO:0002181 ... P60405 39415050
    954871 9d7t:2D (2.7) BS06 MG N/A GO:0002181 ... P60405 39415050
    954872 9d7t:2D (2.7) BS07 MG N/A GO:0002181 ... P60405 39415050
    954873 9d7t:2E (2.7) BS01 rna N/A GO:0003735 ... Q5SHN8 39415050
    954874 9d7t:2E (2.7) BS02 MG N/A GO:0003735 ... Q5SHN8 39415050
    954875 9d7t:2E (2.7) BS03 MG N/A GO:0003735 ... Q5SHN8 39415050
    954876 9d7t:2E (2.7) BS04 MG N/A GO:0003735 ... Q5SHN8 39415050
    954877 9d7t:2F (2.7) BS01 rna N/A GO:0003735 ... Q5SHN9 39415050
    954878 9d7t:2F (2.7) BS02 MG N/A GO:0003735 ... Q5SHN9 39415050
    954879 9d7t:2F (2.7) BS03 MG N/A GO:0003735 ... Q5SHN9 39415050
    954880 9d7t:2F (2.7) BS04 MG N/A GO:0003735 ... Q5SHN9 39415050
    954881 9d7t:2F (2.7) BS05 MG N/A GO:0003735 ... Q5SHN9 39415050
    954882 9d7t:2F (2.7) BS06 MG N/A GO:0003735 ... Q5SHN9 39415050
    954883 9d7t:2G (2.7) BS01 rna N/A GO:0000049 ... Q5SHQ0 39415050
    954884 9d7t:2G (2.7) BS02 rna N/A GO:0000049 ... Q5SHQ0 39415050
    954885 9d7t:2G (2.7) BS03 rna N/A GO:0000049 ... Q5SHQ0 39415050
    954886 9d7t:2H (2.7) BS01 rna N/A GO:0002181 ... P0DOY8 39415050
    954887 9d7t:2I (2.7) BS01 rna N/A GO:0003735 ... Q5SLQ1 39415050
    954888 9d7t:2N (2.7) BS01 rna N/A GO:0003729 ... P60488 39415050
    954889 9d7t:2O (2.7) BS01 rna N/A GO:0003735 ... Q5SHP8 39415050
    954890 9d7t:2O (2.7) BS02 rna N/A GO:0003735 ... Q5SHP8 39415050
    954891 9d7t:2P (2.7) BS01 rna N/A GO:0003735 ... Q5SHQ7 39415050
    954892 9d7t:2Q (2.7) BS01 rna N/A GO:0003735 ... P60489 39415050
    954893 9d7t:2Q (2.7) BS02 rna N/A GO:0003735 ... P60489 39415050
    954894 9d7t:2Q (2.7) BS03 MG N/A GO:0003735 ... P60489 39415050
    954895 9d7t:2R (2.7) BS01 rna N/A GO:0003735 ... Q9Z9H5 39415050
    954896 9d7t:2R (2.7) BS02 MG N/A GO:0003735 ... Q9Z9H5 39415050
    954897 9d7t:2S (2.7) BS01 rna N/A GO:0003735 ... Q5SHQ4 39415050
    954898 9d7t:2S (2.7) BS02 rna N/A GO:0003735 ... Q5SHQ4 39415050
    954899 9d7t:2T (2.7) BS01 rna N/A GO:0003735 ... P60490 39415050
    954900 9d7t:2T (2.7) BS02 rna N/A GO:0003735 ... P60490 39415050
    954901 9d7t:2U (2.7) BS01 rna N/A GO:0000027 ... P60491 39415050
    954902 9d7t:2U (2.7) BS02 MG N/A GO:0000027 ... P60491 39415050
    954903 9d7t:2V (2.7) BS01 rna N/A GO:0003723 ... P60492 39415050
    954904 9d7t:2V (2.7) BS02 MG N/A GO:0003723 ... P60492 39415050
    954905 9d7t:2V (2.7) BS03 MG N/A GO:0003723 ... P60492 39415050
    954906 9d7t:2W (2.7) BS01 rna N/A GO:0003735 ... Q5SHP3 39415050
    954907 9d7t:2W (2.7) BS02 MG N/A GO:0003735 ... Q5SHP3 39415050
    954908 9d7t:2X (2.7) BS01 rna N/A GO:0003735 ... Q5SHP0 39415050
    954909 9d7t:2X (2.7) BS02 MG N/A GO:0003735 ... Q5SHP0 39415050
    954910 9d7t:2X (2.7) BS03 MG N/A GO:0003735 ... Q5SHP0 39415050
    954911 9d7t:2Y (2.7) BS01 rna N/A GO:0003723 ... Q5SHP9 39415050
    954912 9d7t:2Y (2.7) BS02 ZN N/A GO:0003723 ... Q5SHP9 39415050
    954913 9d7t:2Z (2.7) BS01 rna N/A GO:0003723 ... Q5SHZ1 39415050
    954914 9d7t:2Z (2.7) BS02 rna N/A GO:0003723 ... Q5SHZ1 39415050
    954915 9d7t:2b (2.7) BS01 rna N/A GO:0003735 ... P80371 39415050
    954916 9d7t:2c (2.7) BS01 rna N/A GO:0003676 ... P80372 39415050
    954917 9d7t:2d (2.7) BS01 rna N/A GO:0003723 ... P80373 39415050
    954918 9d7t:2d (2.7) BS02 SF4 N/A GO:0003723 ... P80373 39415050
    954919 9d7t:2e (2.7) BS01 rna N/A GO:0003723 ... Q5SHQ5 39415050
    954920 9d7t:2e (2.7) BS02 MG N/A GO:0003723 ... Q5SHQ5 39415050
    954921 9d7t:2f (2.7) BS01 rna N/A GO:0003735 ... Q5SLP8 39415050
    954922 9d7t:2g (2.7) BS01 rna N/A GO:0000049 ... P17291 39415050
    954923 9d7t:2g (2.7) BS02 rna N/A GO:0000049 ... P17291 39415050
    954924 9d7t:2h (2.7) BS01 rna N/A GO:0003735 ... P0DOY9 39415050
    954925 9d7t:2i (2.7) BS01 rna N/A GO:0003723 ... P80374 39415050
    954926 9d7t:2i (2.7) BS02 rna N/A GO:0003723 ... P80374 39415050
    954927 9d7t:2j (2.7) BS01 rna N/A GO:0000049 ... Q5SHN7 39415050
    954928 9d7t:2k (2.7) BS01 rna N/A GO:0003735 ... P80376 39415050
    954929 9d7t:2k (2.7) BS02 MG N/A GO:0003735 ... P80376 39415050
    954930 9d7t:2l (2.7) BS01 rna N/A GO:0000049 ... Q5SHN3 39415050
    954931 9d7t:2l (2.7) BS02 MG N/A GO:0000049 ... Q5SHN3 39415050
    954932 9d7t:2m (2.7) BS01 rna N/A GO:0000049 ... P80377 39415050
    954933 9d7t:2n (2.7) BS01 rna N/A GO:0003735 ... P0DOY6 39415050
    954934 9d7t:2n (2.7) BS02 ZN N/A GO:0003735 ... P0DOY6 39415050
    954935 9d7t:2o (2.7) BS01 rna N/A GO:0003735 ... Q5SJ76 39415050
    954936 9d7t:2o (2.7) BS02 rna N/A GO:0003735 ... Q5SJ76 39415050
    954937 9d7t:2p (2.7) BS01 rna N/A GO:0003735 ... Q5SJH3 39415050
    954938 9d7t:2q (2.7) BS01 rna N/A GO:0003735 ... P0DOY7 39415050
    954939 9d7t:2r (2.7) BS01 rna N/A GO:0003735 ... Q5SLQ0 39415050
    954940 9d7t:2s (2.7) BS01 rna N/A GO:0000028 ... Q5SHP2 39415050
    954941 9d7t:2t (2.7) BS01 rna N/A GO:0003723 ... P80380 39415050
    954942 9d7t:2t (2.7) BS02 MG N/A GO:0003723 ... P80380 39415050
    954943 9d7t:2w (2.7) BS01 rna N/A GO:0003747 ... P96077 39415050
    954944 9d7t:2w (2.7) BS02 rna N/A GO:0003747 ... P96077 39415050
    954945 9d7t:2w (2.7) BS03 rna N/A GO:0003747 ... P96077 39415050
    954946 9d7t:2w (2.7) BS04 rna N/A GO:0003747 ... P96077 39415050
    954947 9d7t:2w (2.7) BS05 MG N/A GO:0003747 ... P96077 39415050
    954948 9d7v:A (3.3) BS01 SPD N/A GO:0000296 ... A0A125NTU3
    Q6NT16
    40319071
    954949 9d85:C (3.59) BS01 rna N/A N/A Q57646 39639027
    954950 9d85:K (3.59) BS01 rna N/A GO:0000408 ... Q58530 39639027
    954951 9d86:A (1.88) BS01 SF4 N/A GO:0006400 ... Q9WZJ0 39644232
    954952 9d88:D (3.18) BS01 IHP N/A GO:0016032 ... P12493 39416065
    954953 9d88:G (3.18) BS01 IHP N/A GO:0016032 ... P12493 39416065
    954954 9d88:J (3.18) BS01 IHP N/A GO:0016032 ... P12493 39416065
    954955 9d88:P (3.18) BS01 IHP N/A GO:0016032 ... P12493 39416065
    954956 9d89:0 (1.95) BS01 rna N/A GO:0000027 ... P0A7N9 39414793
    954957 9d89:1 (1.95) BS01 rna N/A GO:0002181 ... P0A7P5 39414793
    954958 9d89:B (1.95) BS01 rna N/A GO:0002181 ... P0A7Q1 39414793
    954959 9d89:C (1.95) BS01 rna N/A GO:0002181 ... P0A7Q6 39414793
    954960 9d89:C (1.95) BS02 ZN N/A GO:0002181 ... P0A7Q6 39414793
    954961 9d89:F (1.95) BS01 rna N/A GO:0000027 ... P60422 39414793
    954962 9d89:G (1.95) BS01 rna N/A GO:0000027 ... P60438 39414793
    954963 9d89:H (1.95) BS01 rna N/A GO:0001070 ... P60723 39414793
    954964 9d89:H (1.95) BS02 peptide N/A GO:0001070 ... P60723 39414793
    954965 9d89:I (1.95) BS01 rna N/A GO:0002181 ... P02413 39414793
    954966 9d89:J (1.95) BS01 rna N/A GO:0000027 ... P0AG44 39414793
    954967 9d89:K (1.95) BS01 rna N/A GO:0000027 ... P0ADZ0 39414793
    954968 9d89:L (1.95) BS01 rna N/A GO:0000027 ... P0A7L8 39414793
    954969 9d89:L (1.95) BS02 rna N/A GO:0000027 ... P0A7L8 39414793
    954970 9d89:M (1.95) BS01 rna N/A GO:0000027 ... P0A7N4 39414793
    954971 9d89:f (1.95) BS01 rna N/A GO:0000027 ... P62399 39414793
    954972 9d89:f (1.95) BS02 rna N/A GO:0000027 ... P62399 39414793
    954973 9d89:g (1.95) BS01 rna N/A GO:0000027 ... P0AG55 39414793
    954974 9d89:h (1.95) BS01 rna N/A GO:0003735 ... P0A7R1 39414793
    954975 9d89:i (1.95) BS01 rna N/A GO:0002181 ... P0AA10 39414793
    954976 9d89:j (1.95) BS01 rna N/A GO:0002181 ... P0ADY3 39414793
    954977 9d89:l (1.95) BS01 rna N/A GO:0000027 ... P0ADY7 39414793
    954978 9d89:l (1.95) BS02 rna N/A GO:0000027 ... P0ADY7 39414793
    954979 9d89:l (1.95) BS03 MS6 N/A GO:0000027 ... P0ADY7 39414793
    954980 9d89:n (1.95) BS01 rna N/A GO:0002181 ... P0C018 39414793
    954981 9d89:n (1.95) BS02 rna N/A GO:0002181 ... P0C018 39414793
    954982 9d89:o (1.95) BS01 rna N/A GO:0000027 ... P0A7K6 39414793
    954983 9d89:p (1.95) BS01 rna N/A GO:0000027 ... P0A7L3 39414793
    954984 9d89:q (1.95) BS01 rna N/A GO:0002181 ... P0AG48 39414793
    954985 9d89:r (1.95) BS01 rna N/A GO:0002181 ... P61175 39414793
    954986 9d89:t (1.95) BS01 rna N/A GO:0000027 ... P60624 39414793
    954987 9d89:u (1.95) BS01 rna N/A GO:0000027 ... P68919 39414793
    954988 9d89:w (1.95) BS01 rna N/A GO:0000027 ... P0A7M2 39414793
    954989 9d89:x (1.95) BS01 rna N/A GO:0000027 ... P0A7M6 39414793
    954990 9d89:y (1.95) BS01 rna N/A GO:0000027 ... P0AG51 39414793
    954991 9d89:y (1.95) BS02 rna N/A GO:0000027 ... P0AG51 39414793
    954992 9d8a:A (1.65) BS01 GDP N/A GO:0003690 ... A0A367K070 N/A
    954993 9d8b:A (1.82) BS01 GDP N/A GO:0005525 ... A0A0X1KYD0 41724262
    954994 9d8b:B (1.82) BS01 GDP N/A GO:0005525 ... A0A0X1KYD0 41724262
    954995 9d8b:C (1.82) BS01 GDP N/A GO:0005525 ... A0A0X1KYD0 41724262
    954996 9d8b:D (1.82) BS01 GDP N/A GO:0005525 ... A0A0X1KYD0 41724262
    954997 9d8c:A (2.15) BS01 Y33 N/A GO:0008658 ... Q2TR58 39601221
    954998 9d8c:B (2.15) BS01 Y33 N/A GO:0008658 ... Q2TR58 39601221
    954999 9d8c:C (2.15) BS01 Y33 N/A GO:0008658 ... Q2TR58 39601221
    955000 9d8c:D (2.15) BS01 Y33 N/A GO:0008658 ... Q2TR58 39601221

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).