SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    955001 9d8e:A (1.72) BS01 A1A29 N/A GO:0004672 ... Q04771 39541346
    955002 9d8e:B (1.72) BS01 A1A29 N/A GO:0004672 ... Q04771 39541346
    955003 9d8f:A (1.86) BS01 A1A3C N/A GO:0004672 ... Q04771 39541346
    955004 9d8f:B (1.86) BS01 A1A3C N/A GO:0004672 ... Q04771 39541346
    955005 9d8g:A (2.13) BS01 GG5 N/A GO:0000165 ... Q16539 N/A
    955006 9d8g:A (2.13) BS02 A1IKC N/A GO:0000165 ... Q16539 N/A
    955007 9d8m:A (1.201) BS01 ZFJ N/A GO:0001523 ... P50120 N/A
    955008 9d8m:B (1.201) BS01 ZFJ N/A GO:0001523 ... P50120 N/A
    955009 9d8n:A (1.301) BS01 ZFJ N/A GO:0001523 ... P50120 N/A
    955010 9d8n:B (1.301) BS01 ZFJ N/A GO:0001523 ... P50120 N/A
    955011 9d8o:A (1.32) BS01 ZFJ N/A GO:0001523 ... P50120 N/A
    955012 9d8o:B (1.32) BS01 ZFJ N/A GO:0001523 ... P50120 N/A
    955013 9d8p:A (3.2) BS01 peptide N/A GO:0005515 ... Q6PID8 39548056
    955014 9d8q:A (2.751) BS01 peptide N/A N/A D6N7U3 N/A
    955015 9d8q:A (2.751) BS02 EST N/A N/A D6N7U3 N/A
    955016 9d8s:A (2.12) BS01 AMP N/A GO:0004672 ... A3FQ16 N/A
    955017 9d8s:A (2.12) BS02 CA N/A GO:0004672 ... A3FQ16 N/A
    955018 9d8s:A (2.12) BS03 CA N/A GO:0004672 ... A3FQ16 N/A
    955019 9d8s:A (2.12) BS04 MG N/A GO:0004672 ... A3FQ16 N/A
    955020 9d8s:A (2.12) BS05 MG N/A GO:0004672 ... A3FQ16 N/A
    955021 9d8t:A (1.97) BS01 A1A20 N/A N/A N/A 41835567
    955022 9d8u:A (2.0) BS01 A1AZ4 N/A GO:0000082 ... Q00534 40068598
    955023 9d8z:A (1.85) BS01 A1A3D N/A GO:0004672 ... Q04771 39541346
    955024 9d8z:B (1.85) BS01 A1A3D N/A GO:0004672 ... Q04771 39541346
    955025 9d90:J (3.91) BS01 MAN N/A N/A N/A 40382314
    955026 9d93:Oa (2.85) BS01 peptide N/A N/A Q9B096 40239650
    955027 9d93:Oa (2.85) BS02 peptide N/A N/A Q9B096 40239650
    955028 9d93:Ob (2.85) BS01 peptide N/A N/A Q9B096 40239650
    955029 9d93:Ob (2.85) BS02 peptide N/A N/A Q9B096 40239650
    955030 9d93:Oc (2.85) BS01 peptide N/A N/A Q9B096 40239650
    955031 9d93:Oc (2.85) BS02 peptide N/A N/A Q9B096 40239650
    955032 9d95:A (2.8) BS01 peptide N/A N/A E5FQ58 N/A
    955033 9d95:D (2.8) BS01 peptide N/A N/A N/A N/A
    955034 9d95:E (2.8) BS01 peptide N/A N/A N/A N/A
    955035 9d95:F (2.8) BS01 peptide N/A N/A E5FQ58 N/A
    955036 9d95:I (2.8) BS01 peptide N/A N/A N/A N/A
    955037 9d95:J (2.8) BS01 peptide N/A N/A N/A N/A
    955038 9d95:K (2.8) BS01 peptide N/A N/A E5FQ58 N/A
    955039 9d95:N (2.8) BS01 peptide N/A N/A N/A N/A
    955040 9d95:O (2.8) BS01 peptide N/A N/A N/A N/A
    955041 9d95:P (2.8) BS01 peptide N/A N/A E5FQ58 N/A
    955042 9d95:S (2.8) BS01 peptide N/A N/A N/A N/A
    955043 9d95:T (2.8) BS01 peptide N/A N/A N/A N/A
    955044 9d96:A (2.4) BS01 peptide N/A N/A E5FQ58 N/A
    955045 9d97:A (1.6) BS01 peptide N/A N/A E5FQ58 N/A
    955046 9d97:G (1.6) BS01 peptide N/A N/A P43629 N/A
    955047 9d98:H (4.19) BS01 MAN N/A N/A N/A 40382314
    955048 9d9d:A (2.09) BS01 A1A28 N/A GO:0005524 ... P46598 N/A
    955049 9d9e:A (2.03) BS01 A1A27 N/A GO:0005524 ... P46598 N/A
    955050 9d9f:A (1.78) BS01 A1A26 N/A GO:0005524 ... P46598 N/A
    955051 9d9g:A (1.68) BS01 A1A24 N/A GO:0005524 ... P46598 N/A
    955052 9d9h:A (1.96) BS01 A1A26 N/A GO:0005524 ... P08238 N/A
    955053 9d9i:A (1.5) BS01 A1A24 N/A GO:0005524 ... P08238 N/A
    955054 9d9j:A (1.45) BS01 CU N/A GO:0003796 ... D9IEF7 41794029
    955055 9d9j:A (1.45) BS02 NTA N/A GO:0003796 ... D9IEF7 41794029
    955056 9d9k:A (2.63) BS01 A1A23 N/A GO:0005524 ... Q9HW02 N/A
    955057 9d9k:A (2.63) BS02 A1A23 N/A GO:0005524 ... Q9HW02 N/A
    955058 9d9n:A (1.68) BS01 A1A25 N/A N/A N/A 41835567
    955059 9d9n:A (1.68) BS02 A1A25 N/A N/A N/A 41835567
    955060 9d9n:A (1.68) BS03 ZN N/A N/A N/A 41835567
    955061 9d9n:A (1.68) BS04 ZN N/A N/A N/A 41835567
    955062 9d9n:B (1.68) BS01 A1A25 N/A N/A N/A 41835567
    955063 9d9n:B (1.68) BS02 A1A25 N/A N/A N/A 41835567
    955064 9d9n:B (1.68) BS03 ZN N/A N/A N/A 41835567
    955065 9d9n:B (1.68) BS04 ZN N/A N/A N/A 41835567
    955066 9d9o:A (2.41) BS01 rna N/A GO:0004197 ... P03313 N/A
    955067 9d9o:B (2.41) BS01 rna N/A GO:0004197 ... P03313 N/A
    955068 9d9p:A (2.69) BS01 rna N/A GO:0004197 ... P03313 N/A
    955069 9d9p:B (2.69) BS01 rna N/A GO:0004197 ... P03313 N/A
    955070 9d9r:A (2.389) BS01 dna N/A GO:0000981 ... Q9H161 40410151
    955071 9d9r:A (2.389) BS02 dna N/A GO:0000981 ... Q9H161 40410151
    955072 9d9r:B (2.389) BS01 dna N/A GO:0000981 ... Q9H161 40410151
    955073 9d9r:B (2.389) BS02 dna N/A GO:0000981 ... Q9H161 40410151
    955074 9d9t:A (2.0) BS01 AG7 N/A GO:0004197 ... K4L8Z7 39873493
    955075 9d9u:A (2.35) BS01 CLF N/A GO:0016491 ... Q2RW97 N/A
    955076 9d9u:B (2.35) BS01 CLF N/A GO:0016491 ... Q2RW97 N/A
    955077 9d9u:C (2.35) BS01 CLF N/A GO:0016491 ... Q2RW98 N/A
    955078 9d9u:D (2.35) BS01 CLF N/A GO:0016491 ... Q2RW98 N/A
    955079 9d9y:A (1.8) BS01 AG7 N/A GO:0004197 ... Q83883 39873493
    955080 9d9y:B (1.8) BS01 AG7 N/A GO:0004197 ... Q83883 39873493
    955081 9d9z:A (3.4) BS01 ZN N/A GO:0005515 ... Q5T4S7 40328314
    955082 9d9z:A (3.4) BS02 ZN N/A GO:0005515 ... Q5T4S7 40328314
    955083 9d9z:A (3.4) BS03 ZN N/A GO:0005515 ... Q5T4S7 40328314
    955084 9d9z:A (3.4) BS04 ZN N/A GO:0005515 ... Q5T4S7 40328314
    955085 9d9z:A (3.4) BS05 ZN N/A GO:0005515 ... Q5T4S7 40328314
    955086 9d9z:A (3.4) BS06 ZN N/A GO:0005515 ... Q5T4S7 40328314
    955087 9d9z:B (3.4) BS01 ZN N/A GO:0005515 ... Q5T4S7 40328314
    955088 9d9z:B (3.4) BS02 ZN N/A GO:0005515 ... Q5T4S7 40328314
    955089 9d9z:B (3.4) BS03 ZN N/A GO:0005515 ... Q5T4S7 40328314
    955090 9d9z:B (3.4) BS04 ZN N/A GO:0005515 ... Q5T4S7 40328314
    955091 9d9z:B (3.4) BS05 ZN N/A GO:0005515 ... Q5T4S7 40328314
    955092 9d9z:C (3.4) BS01 CA N/A GO:0000922 ... P0DP23 40328314
    955093 9d9z:C (3.4) BS02 CA N/A GO:0000922 ... P0DP23 40328314
    955094 9d9z:D (3.4) BS01 CA N/A GO:0000922 ... P0DP23 40328314
    955095 9d9z:D (3.4) BS02 CA N/A GO:0000922 ... P0DP23 40328314
    955096 9d9z:E (3.4) BS01 ZN N/A GO:0005515 ... Q9P0J7 40328314
    955097 9d9z:E (3.4) BS02 ZN N/A GO:0005515 ... Q9P0J7 40328314
    955098 9d9z:E (3.4) BS03 ZN N/A GO:0005515 ... Q9P0J7 40328314
    955099 9d9z:E (3.4) BS04 ZN N/A GO:0005515 ... Q9P0J7 40328314
    955100 9d9z:F (3.4) BS01 ZN N/A GO:0005515 ... Q9P0J7 40328314
    955101 9d9z:F (3.4) BS02 ZN N/A GO:0005515 ... Q9P0J7 40328314
    955102 9d9z:F (3.4) BS03 ZN N/A GO:0005515 ... Q9P0J7 40328314
    955103 9d9z:F (3.4) BS04 ZN N/A GO:0005515 ... Q9P0J7 40328314
    955104 9da0:A (2.28) BS01 AG7 N/A GO:0004197 ... S0F178 39873493
    955105 9da1:A (1.47) BS01 A1BBB N/A GO:0009159 ... O43598 39818772
    955106 9da1:A (1.47) BS02 A1BBB N/A GO:0009159 ... O43598 39818772
    955107 9da1:B (1.47) BS01 A1BBB N/A GO:0009159 ... O43598 39818772
    955108 9da1:B (1.47) BS02 A1BBB N/A GO:0009159 ... O43598 39818772
    955109 9da2:A (1.13) BS01 A1BBC N/A GO:0009159 ... O43598 39818772
    955110 9da2:A (1.13) BS02 A1BBC N/A GO:0009159 ... O43598 39818772
    955111 9da2:B (1.13) BS01 A1BBC N/A GO:0009159 ... O43598 39818772
    955112 9da2:B (1.13) BS02 A1BBC N/A GO:0009159 ... O43598 39818772
    955113 9da3:A (1.51) BS01 A1BBD N/A GO:0009159 ... O43598 39818772
    955114 9da3:A (1.51) BS02 A1BBD N/A GO:0009159 ... O43598 39818772
    955115 9da3:B (1.51) BS01 A1BBD N/A GO:0009159 ... O43598 39818772
    955116 9da3:B (1.51) BS02 A1BBD N/A GO:0009159 ... O43598 39818772
    955117 9da4:A (1.73) BS01 A1BBE N/A GO:0009159 ... O43598 39818772
    955118 9da5:A (2.82) BS01 A1BBF N/A GO:0009159 ... O43598 39818772
    955119 9da5:A (2.82) BS02 A1BBF N/A GO:0009159 ... O43598 39818772
    955120 9da5:B (2.82) BS01 A1BBF N/A GO:0009159 ... O43598 39818772
    955121 9da5:B (2.82) BS02 A1BBF N/A GO:0009159 ... O43598 39818772
    955122 9da6:A (1.35) BS01 NR1 N/A GO:0009159 ... O43598 39818772
    955123 9da6:A (1.35) BS02 NR1 N/A GO:0009159 ... O43598 39818772
    955124 9da6:B (1.35) BS01 NR1 N/A GO:0009159 ... O43598 39818772
    955125 9da6:B (1.35) BS02 NR1 N/A GO:0009159 ... O43598 39818772
    955126 9da7:A (2.5) BS01 AG7 N/A GO:0004197 ... S0F178 39873493
    955127 9da8:A (2.94) BS01 peptide N/A GO:0000226 ... P02554 N/A
    955128 9da8:A (2.94) BS02 GDP N/A GO:0000226 ... P02554 N/A
    955129 9da8:A (2.94) BS03 TA1 N/A GO:0000226 ... P02554 N/A
    955130 9da8:B (2.94) BS01 peptide N/A GO:0000226 ... Q2XVP4 N/A
    955131 9da8:B (2.94) BS02 GTP N/A GO:0000226 ... Q2XVP4 N/A
    955132 9da8:C (2.94) BS01 peptide N/A GO:0000226 ... P02554 N/A
    955133 9da8:C (2.94) BS02 GDP N/A GO:0000226 ... P02554 N/A
    955134 9da8:C (2.94) BS03 TA1 N/A GO:0000226 ... P02554 N/A
    955135 9da8:K (2.94) BS01 peptide N/A GO:0000226 ... P02554 N/A
    955136 9da8:K (2.94) BS02 GDP N/A GO:0000226 ... P02554 N/A
    955137 9da8:K (2.94) BS03 TA1 N/A GO:0000226 ... P02554 N/A
    955138 9da8:L (2.94) BS01 peptide N/A GO:0000226 ... Q2XVP4 N/A
    955139 9da8:L (2.94) BS02 GTP N/A GO:0000226 ... Q2XVP4 N/A
    955140 9da8:M (2.94) BS01 peptide N/A GO:0000226 ... P02554 N/A
    955141 9da8:M (2.94) BS02 GDP N/A GO:0000226 ... P02554 N/A
    955142 9da8:M (2.94) BS03 TA1 N/A GO:0000226 ... P02554 N/A
    955143 9da9:A (2.05) BS01 CKA N/A GO:0015276 ... P35439 40089537
    955144 9da9:B (2.05) BS01 GLU N/A GO:0015276 ... Q00959 40089537
    955145 9dae:A (2.24) BS01 MG N/A GO:0005524 ... P46893 N/A
    955146 9dae:BA (2.24) BS01 MG N/A GO:0005524 ... P46893 N/A
    955147 9dae:C (2.24) BS01 MG N/A GO:0005524 ... P46893 N/A
    955148 9dae:DA (2.24) BS01 MG N/A GO:0005524 ... P46893 N/A
    955149 9dae:E (2.24) BS01 MG N/A GO:0005524 ... P46893 N/A
    955150 9dae:FA (2.24) BS01 MG N/A GO:0005524 ... P46893 N/A
    955151 9dae:G (2.24) BS01 MG N/A GO:0005524 ... P46893 N/A
    955152 9dae:HA (2.24) BS01 MG N/A GO:0005524 ... P46893 N/A
    955153 9dae:I (2.24) BS01 MG N/A GO:0005524 ... P46893 N/A
    955154 9dae:JA (2.24) BS01 MG N/A GO:0005524 ... P46893 N/A
    955155 9dae:K (2.24) BS01 MG N/A GO:0005524 ... P46893 N/A
    955156 9dae:LA (2.24) BS01 MG N/A GO:0005524 ... P46893 N/A
    955157 9dae:M (2.24) BS01 MG N/A GO:0005524 ... P46893 N/A
    955158 9dae:NA (2.24) BS01 MG N/A GO:0005524 ... P46893 N/A
    955159 9dae:O (2.24) BS01 MG N/A GO:0005524 ... P46893 N/A
    955160 9dae:PA (2.24) BS01 MG N/A GO:0005524 ... P46893 N/A
    955161 9dae:Q (2.24) BS01 MG N/A GO:0005524 ... P46893 N/A
    955162 9dae:RA (2.24) BS01 MG N/A GO:0005524 ... P46893 N/A
    955163 9dae:S (2.24) BS01 MG N/A GO:0005524 ... P46893 N/A
    955164 9dae:TA (2.24) BS01 MG N/A GO:0005524 ... P46893 N/A
    955165 9dae:V (2.24) BS01 MG N/A GO:0005524 ... P46893 N/A
    955166 9dae:VA (2.24) BS01 MG N/A GO:0005524 ... P46893 N/A
    955167 9dae:X (2.24) BS01 MG N/A GO:0005524 ... P46893 N/A
    955168 9dae:Z (2.24) BS01 MG N/A GO:0005524 ... P46893 N/A
    955169 9daf:A (2.35) BS01 ASP N/A GO:0004067 ... P00805 40237204
    955170 9daf:B (2.35) BS01 ASP N/A GO:0004067 ... P00805 40237204
    955171 9daf:C (2.35) BS01 ASP N/A GO:0004067 ... P00805 40237204
    955172 9daf:D (2.35) BS01 ASP N/A GO:0004067 ... P00805 40237204
    955173 9dag:A (1.84) BS01 A1A3B N/A N/A N/A 41835567
    955174 9dag:A (1.84) BS02 A1A3B N/A N/A N/A 41835567
    955175 9dag:A (1.84) BS03 ZN N/A N/A N/A 41835567
    955176 9dag:A (1.84) BS04 ZN N/A N/A N/A 41835567
    955177 9dah:A (2.7) BS01 ASP N/A GO:0004067 ... P00805 40237204
    955178 9dah:B (2.7) BS01 ASP N/A GO:0004067 ... P00805 40237204
    955179 9dai:A (2.864) BS01 STU N/A GO:0004672 ... P04629 N/A
    955180 9daj:A (2.5) BS01 AG7 N/A GO:0004197 ... K4L8Z7 39873493
    955181 9dak:A (2.4) BS01 ZN N/A GO:0000122 ... Q56H28 39922191
    955182 9dal:A (2.6) BS01 AG7 N/A GO:0004197 ... B2DD26 39873493
    955183 9dam:A () BS01 MG N/A N/A N/A N/A
    955184 9dan:A (2.6) BS01 Y6H N/A GO:0000045 ... Q86WV6 41639452
    955185 9dan:A (2.6) BS02 A1BBG N/A GO:0000045 ... Q86WV6 41639452
    955186 9dan:A (2.6) BS03 Y01 N/A GO:0000045 ... Q86WV6 41639452
    955187 9dan:A (2.6) BS04 1SY N/A GO:0000045 ... Q86WV6 41639452
    955188 9dan:B (2.6) BS01 1SY N/A GO:0000045 ... Q86WV6 41639452
    955189 9dan:C (2.6) BS01 Y6H N/A GO:0000045 ... Q86WV6 41639452
    955190 9dan:C (2.6) BS02 A1BBG N/A GO:0000045 ... Q86WV6 41639452
    955191 9dan:C (2.6) BS03 Y01 N/A GO:0000045 ... Q86WV6 41639452
    955192 9dan:C (2.6) BS04 1SY N/A GO:0000045 ... Q86WV6 41639452
    955193 9dan:D (2.6) BS01 1SY N/A GO:0000045 ... Q86WV6 41639452
    955194 9dao:A (2.8) BS01 CA N/A GO:0001525 ... P08514 40101235
    955195 9dao:A (2.8) BS02 CA N/A GO:0001525 ... P08514 40101235
    955196 9dao:A (2.8) BS03 CA N/A GO:0001525 ... P08514 40101235
    955197 9dao:A (2.8) BS04 CA N/A GO:0001525 ... P08514 40101235
    955198 9dao:B (2.8) BS01 MG N/A GO:0001525 ... P05106 40101235
    955199 9dao:B (2.8) BS02 CA N/A GO:0001525 ... P05106 40101235
    955200 9dap:A (2.71) BS01 AG7 N/A GO:0004197 ... B2DD26 39873493

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).