SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    955601 9dcc:w (3.12) BS01 dna N/A GO:0005198 ... Q9YIJ1 39907279
    955602 9dcc:w (3.12) BS02 dna N/A GO:0005198 ... Q9YIJ1 39907279
    955603 9dcc:x (3.12) BS01 dna N/A GO:0005198 ... Q9YIJ1 39907279
    955604 9dcc:x (3.12) BS02 dna N/A GO:0005198 ... Q9YIJ1 39907279
    955605 9dcc:y (3.12) BS01 dna N/A GO:0005198 ... Q9YIJ1 39907279
    955606 9dcc:y (3.12) BS02 dna N/A GO:0005198 ... Q9YIJ1 39907279
    955607 9dcc:z (3.12) BS01 dna N/A GO:0005198 ... Q9YIJ1 39907279
    955608 9dcc:z (3.12) BS02 dna N/A GO:0005198 ... Q9YIJ1 39907279
    955609 9dcd:A (2.7) BS01 peptide N/A GO:0000287 ... P17612 40476486
    955610 9dcd:A (2.7) BS02 A1A3J N/A GO:0000287 ... P17612 40476486
    955611 9dcf:A (2.87) BS01 rna N/A GO:0004197 ... P03313 40073119
    955612 9dcf:B (2.87) BS01 rna N/A GO:0004197 ... P03313 40073119
    955613 9dch:A (3.4) BS01 ZN N/A GO:0006338 ... Q15910 39257770
    955614 9dch:A (3.4) BS02 ZN N/A GO:0006338 ... Q15910 39257770
    955615 9dch:A (3.4) BS03 ZN N/A GO:0006338 ... Q15910 39257770
    955616 9dch:A (3.4) BS04 ZN N/A GO:0006338 ... Q15910 39257770
    955617 9dch:A (3.4) BS05 ZN N/A GO:0006338 ... Q15910 39257770
    955618 9dch:A (3.4) BS06 ZN N/A GO:0006338 ... Q15910 39257770
    955619 9dch:A (3.4) BS07 ZN N/A GO:0006338 ... Q15910 39257770
    955620 9dch:H (3.4) BS01 ZN N/A GO:0006338 ... Q15910 39257770
    955621 9dch:H (3.4) BS02 ZN N/A GO:0006338 ... Q15910 39257770
    955622 9dch:H (3.4) BS03 ZN N/A GO:0006338 ... Q15910 39257770
    955623 9dch:H (3.4) BS04 ZN N/A GO:0006338 ... Q15910 39257770
    955624 9dch:H (3.4) BS05 ZN N/A GO:0006338 ... Q15910 39257770
    955625 9dch:H (3.4) BS06 ZN N/A GO:0006338 ... Q15910 39257770
    955626 9dcl:A (1.95) BS01 FES N/A GO:0005506 ... O53156 40667192
    955627 9dcm:B (3.11) BS01 CA N/A GO:0016757 ... Q4QES5 N/A
    955628 9dcm:B (3.11) BS02 UDP N/A GO:0016757 ... Q4QES5 N/A
    955629 9dcm:C (3.11) BS01 CA N/A GO:0016757 ... Q4QES5 N/A
    955630 9dcm:C (3.11) BS02 UDP N/A GO:0016757 ... Q4QES5 N/A
    955631 9dco:A (2.11) BS01 SF4 N/A GO:0006400 ... Q9WZJ0 39644232
    955632 9dco:A (2.11) BS02 ZN N/A GO:0006400 ... Q9WZJ0 39644232
    955633 9dcp:A (2.06) BS01 COA N/A N/A P13702 N/A
    955634 9dcp:A (2.06) BS02 COA N/A N/A P13702 N/A
    955635 9dcp:A (2.06) BS03 A1AFY N/A N/A P13702 N/A
    955636 9dcp:A (2.06) BS04 NAI N/A N/A P13702 N/A
    955637 9dcp:A (2.06) BS05 NAD N/A N/A P13702 N/A
    955638 9dcp:B (2.06) BS01 COA N/A N/A P13702 N/A
    955639 9dcp:B (2.06) BS02 NAI N/A N/A P13702 N/A
    955640 9dcp:B (2.06) BS03 NAD N/A N/A P13702 N/A
    955641 9dcp:B (2.06) BS04 MEV N/A N/A P13702 N/A
    955642 9dcq:A (2.36) BS01 CA N/A N/A N/A N/A
    955643 9dcq:A (2.36) BS02 CA N/A N/A N/A N/A
    955644 9dcw:A (1.721) BS01 A1AZI N/A GO:0003007 ... P62942 40059881
    955645 9dcy:A (2.35) BS01 peptide N/A N/A N/A 40993395
    955646 9dcy:C (2.35) BS01 peptide N/A N/A N/A 40993395
    955647 9dd1:A (3.7) BS01 peptide N/A N/A N/A 40993395
    955648 9dd3:A (1.64) BS01 peptide N/A N/A N/A 40993395
    955649 9dd7:I (4.1) BS01 MAN N/A N/A N/A 41174178
    955650 9dd7:J (4.1) BS01 MAN N/A N/A N/A 41174178
    955651 9dd7:J (4.1) BS02 MAN N/A N/A N/A 41174178
    955652 9dd7:K (4.1) BS01 MAN N/A N/A N/A 41174178
    955653 9dd7:K (4.1) BS02 MAN N/A N/A N/A 41174178
    955654 9dd8:H (3.08) BS01 MAN N/A N/A N/A 41174178
    955655 9dd8:H (3.08) BS02 MAN N/A N/A N/A 41174178
    955656 9dd8:I (3.08) BS01 MAN N/A N/A N/A 41174178
    955657 9dd8:I (3.08) BS02 MAN N/A N/A N/A 41174178
    955658 9dd8:J (3.08) BS01 MAN N/A N/A N/A 41174178
    955659 9dd8:J (3.08) BS02 MAN N/A N/A N/A 41174178
    955660 9dd9:H (3.77) BS01 MAN N/A N/A N/A 41174178
    955661 9dd9:H (3.77) BS02 MAN N/A N/A N/A 41174178
    955662 9dd9:I (3.77) BS01 MAN N/A N/A N/A 41174178
    955663 9dd9:I (3.77) BS02 MAN N/A N/A N/A 41174178
    955664 9dd9:J (3.77) BS01 MAN N/A N/A N/A 41174178
    955665 9dd9:J (3.77) BS02 MAN N/A N/A N/A 41174178
    955666 9ddd:A (2.0) BS01 ALA N/A GO:0005515 ... P9WQ69 40667192
    955667 9ddd:B (2.0) BS01 ALA N/A GO:0005515 ... P9WQ69 40667192
    955668 9ddd:C (2.0) BS01 ZN N/A GO:0005506 ... O53156 40667192
    955669 9ddd:D (2.0) BS01 ZN N/A GO:0005506 ... O53156 40667192
    955670 9dde:A (3.2) BS01 dna N/A GO:0000786 ... P84233 39537923
    955671 9dde:A (3.2) BS02 dna N/A GO:0000786 ... P84233 39537923
    955672 9dde:B (3.2) BS01 dna N/A GO:0000786 ... P62799 39537923
    955673 9dde:B (3.2) BS02 dna N/A GO:0000786 ... P62799 39537923
    955674 9dde:C (3.2) BS01 dna N/A GO:0000786 ... P06897 39537923
    955675 9dde:C (3.2) BS02 dna N/A GO:0000786 ... P06897 39537923
    955676 9dde:D (3.2) BS01 dna N/A GO:0000786 ... P02281 39537923
    955677 9dde:E (3.2) BS01 dna N/A GO:0000786 ... P84233 39537923
    955678 9dde:E (3.2) BS02 dna N/A GO:0000786 ... P84233 39537923
    955679 9dde:F (3.2) BS01 dna N/A GO:0000786 ... P62799 39537923
    955680 9dde:G (3.2) BS01 dna N/A GO:0000786 ... P06897 39537923
    955681 9dde:G (3.2) BS02 dna N/A GO:0000786 ... P06897 39537923
    955682 9dde:H (3.2) BS01 dna N/A GO:0000786 ... P02281 39537923
    955683 9dde:K (3.2) BS01 ZN N/A GO:0000122 ... P35226 39537923
    955684 9dde:K (3.2) BS02 ZN N/A GO:0000122 ... P35226 39537923
    955685 9dde:L (3.2) BS01 ZN N/A GO:0000122 ... Q99496 39537923
    955686 9dde:L (3.2) BS02 ZN N/A GO:0000122 ... Q99496 39537923
    955687 9dde:M (3.2) BS01 ZN N/A GO:0000785 ... Q8N488 39537923
    955688 9ddf:A (1.549) BS01 A1A3N N/A GO:0008233 ... P0DTD1 41076627
    955689 9ddg:A (1.4) BS01 A1A3O N/A GO:0008233 ... P0DTD1 41076627
    955690 9ddm:B (2.94) BS01 peptide N/A GO:0005515 ... P0ABU9 40595649
    955691 9ddm:C (2.94) BS01 peptide N/A GO:0005515 ... P0ABU9 40595649
    955692 9ddm:D (2.94) BS01 peptide N/A GO:0005515 ... P0ABU9 40595649
    955693 9ddm:E (2.94) BS01 peptide N/A GO:0005515 ... P0ABU9 40595649
    955694 9ddm:Y (2.94) BS01 peptide N/A GO:0005515 ... P0ABV6 40595649
    955695 9ddn:A (3.18) BS01 peptide N/A GO:0005515 ... P0ABU9 40595649
    955696 9ddn:B (3.18) BS01 peptide N/A GO:0005515 ... P0ABU9 40595649
    955697 9ddn:B (3.18) BS02 peptide N/A GO:0005515 ... P0ABU9 40595649
    955698 9ddn:C (3.18) BS01 peptide N/A GO:0005515 ... P0ABU9 40595649
    955699 9ddn:C (3.18) BS02 peptide N/A GO:0005515 ... P0ABU9 40595649
    955700 9ddn:D (3.18) BS01 peptide N/A GO:0005515 ... P0ABU9 40595649
    955701 9ddn:E (3.18) BS01 peptide N/A GO:0005515 ... P0ABU9 40595649
    955702 9ddn:E (3.18) BS02 peptide N/A GO:0005515 ... P0ABU9 40595649
    955703 9ddo:B (2.8) BS01 peptide N/A GO:0005515 ... P0ABU7 40595649
    955704 9ddo:C (2.8) BS01 peptide N/A GO:0005515 ... P0ABU7 40595649
    955705 9ddo:C (2.8) BS02 peptide N/A GO:0005515 ... P0ABU7 40595649
    955706 9ddo:D (2.8) BS01 peptide N/A GO:0005515 ... P0ABU7 40595649
    955707 9ddo:E (2.8) BS01 peptide N/A GO:0005515 ... P0ABU7 40595649
    955708 9ddo:Y (2.8) BS01 peptide N/A GO:0005515 ... P0ABV2 40595649
    955709 9ddp:B (3.16) BS01 peptide N/A GO:0005515 ... P0ABU7 40595649
    955710 9ddp:C (3.16) BS01 peptide N/A GO:0005515 ... P0ABU7 40595649
    955711 9ddp:D (3.16) BS01 peptide N/A GO:0005515 ... P0ABU7 40595649
    955712 9ddp:E (3.16) BS01 peptide N/A GO:0005515 ... P0ABU7 40595649
    955713 9ddp:Y (3.16) BS01 peptide N/A GO:0005515 ... P0ABV2 40595649
    955714 9ddq:A (3.19) BS01 peptide N/A GO:0005515 ... P0ABU7 40595649
    955715 9ddq:B (3.19) BS01 peptide N/A GO:0005515 ... P0ABU7 40595649
    955716 9ddq:C (3.19) BS01 peptide N/A GO:0005515 ... P0ABU7 40595649
    955717 9ddq:D (3.19) BS01 peptide N/A GO:0005515 ... P0ABU7 40595649
    955718 9ddq:Y (3.19) BS01 peptide N/A GO:0005515 ... P0ABV2 40595649
    955719 9ddr:A (2.15) BS01 dna N/A GO:0003684 ... Q9UNA4 40593703
    955720 9ddr:A (2.15) BS02 TTP N/A GO:0003684 ... Q9UNA4 40593703
    955721 9ddr:A (2.15) BS03 CA N/A GO:0003684 ... Q9UNA4 40593703
    955722 9ddr:A (2.15) BS04 CA N/A GO:0003684 ... Q9UNA4 40593703
    955723 9ddu:A (1.599) BS01 ZFJ N/A GO:0001523 ... P50120 N/A
    955724 9ddu:B (1.599) BS01 ZFJ N/A GO:0001523 ... P50120 N/A
    955725 9ddw:A (2.49) BS01 ATP N/A GO:0001614 ... Q9UBL9 40938707
    955726 9ddw:A (2.49) BS02 ATP N/A GO:0001614 ... Q9UBL9 40938707
    955727 9ddw:B (2.49) BS01 ATP N/A GO:0001614 ... Q9UBL9 40938707
    955728 9ddw:B (2.49) BS02 ATP N/A GO:0001614 ... Q9UBL9 40938707
    955729 9ddw:C (2.49) BS01 ATP N/A GO:0001614 ... Q9UBL9 40938707
    955730 9ddw:C (2.49) BS02 ATP N/A GO:0001614 ... Q9UBL9 40938707
    955731 9ddx:A (2.55) BS01 ATP N/A GO:0001614 ... Q9UBL9 40938707
    955732 9ddx:A (2.55) BS02 ATP N/A GO:0001614 ... Q9UBL9 40938707
    955733 9ddx:B (2.55) BS01 ATP N/A GO:0001614 ... Q9UBL9 40938707
    955734 9ddx:B (2.55) BS02 ATP N/A GO:0001614 ... Q9UBL9 40938707
    955735 9ddx:C (2.55) BS01 ATP N/A GO:0001614 ... Q9UBL9 40938707
    955736 9ddx:C (2.55) BS02 ATP N/A GO:0001614 ... Q9UBL9 40938707
    955737 9de1:A (1.4) BS01 ZFJ N/A GO:0001523 ... P50120 N/A
    955738 9de1:B (1.4) BS01 ZFJ N/A GO:0001523 ... P50120 N/A
    955739 9de2:A (-1.00) BS01 ZN N/A GO:0003714 ... O75081 40421803
    955740 9de2:A (-1.00) BS02 ZN N/A GO:0003714 ... O75081 40421803
    955741 9de3:A (2.15) BS01 A1A4C N/A GO:0008270 ... C7C422 N/A
    955742 9de3:A (2.15) BS02 ZN N/A GO:0008270 ... C7C422 N/A
    955743 9de3:A (2.15) BS03 ZN N/A GO:0008270 ... C7C422 N/A
    955744 9dei:A (2.99) BS01 rna N/A N/A N/A N/A
    955745 9dei:B (2.99) BS01 ZN N/A N/A C9ZW42 N/A
    955746 9dei:C (2.99) BS01 MG N/A N/A C9ZIA9 N/A
    955747 9dei:C (2.99) BS02 MG N/A N/A C9ZIA9 N/A
    955748 9dei:C (2.99) BS03 MG N/A N/A C9ZIA9 N/A
    955749 9dei:C (2.99) BS04 ZN N/A N/A C9ZIA9 N/A
    955750 9dei:D (2.99) BS01 ZN N/A GO:0003723 ... Q86MV9 N/A
    955751 9dei:F (2.99) BS01 rna N/A GO:0000175 ... Q95W13 N/A
    955752 9dei:G (2.99) BS01 rna N/A N/A A0A3L6L0V2 N/A
    955753 9dei:K (2.99) BS01 rna N/A N/A A0A3L6L0V2 N/A
    955754 9dei:K (2.99) BS02 ZN N/A N/A A0A3L6L0V2 N/A
    955755 9dei:O (2.99) BS01 ZN N/A GO:0005515 ... Q95W15 N/A
    955756 9dek:A (2.0) BS01 peptide N/A GO:0004843 ... Q93009 39983720
    955757 9dek:B (2.0) BS01 peptide N/A GO:0004843 ... Q93009 39983720
    955758 9del:A (2.5) BS01 peptide N/A GO:0004843 ... Q93009 39983720
    955759 9del:B (2.5) BS01 peptide N/A GO:0004843 ... Q93009 39983720
    955760 9dem:A (1.77) BS01 peptide N/A GO:0004843 ... Q93009 39983720
    955761 9den:A (2.93) BS01 peptide N/A GO:0004843 ... Q93009 39983720
    955762 9den:B (2.93) BS01 peptide N/A GO:0004843 ... Q93009 39983720
    955763 9deo:A (2.7) BS01 peptide N/A GO:0004843 ... Q93009 39983720
    955764 9deo:B (2.7) BS01 peptide N/A GO:0004843 ... Q93009 39983720
    955765 9dep:A (2.57) BS01 peptide N/A GO:0004843 ... Q93009 39983720
    955766 9dep:B (2.57) BS01 peptide N/A GO:0004843 ... Q93009 39983720
    955767 9dep:E (2.57) BS01 peptide N/A GO:0004843 ... Q93009 39983720
    955768 9deq:A (4.1) BS01 CA N/A GO:0001525 ... P08514 39366965
    955769 9deq:A (4.1) BS02 CA N/A GO:0001525 ... P08514 39366965
    955770 9deq:A (4.1) BS03 CA N/A GO:0001525 ... P08514 39366965
    955771 9deq:A (4.1) BS04 CA N/A GO:0001525 ... P08514 39366965
    955772 9deq:A (4.1) BS05 CA N/A GO:0001525 ... P08514 39366965
    955773 9deq:A (4.1) BS06 A1A5G N/A GO:0001525 ... P08514 39366965
    955774 9deq:B (4.1) BS01 MG N/A GO:0001525 ... P05106 39366965
    955775 9deq:B (4.1) BS02 CA N/A GO:0001525 ... P05106 39366965
    955776 9deq:B (4.1) BS03 CA N/A GO:0001525 ... P05106 39366965
    955777 9deq:B (4.1) BS04 A1A5G N/A GO:0001525 ... P05106 39366965
    955778 9der:A (3.9) BS01 CA N/A GO:0001525 ... P08514 39366965
    955779 9der:A (3.9) BS02 CA N/A GO:0001525 ... P08514 39366965
    955780 9der:A (3.9) BS03 CA N/A GO:0001525 ... P08514 39366965
    955781 9der:A (3.9) BS04 CA N/A GO:0001525 ... P08514 39366965
    955782 9der:A (3.9) BS05 AGG N/A GO:0001525 ... P08514 39366965
    955783 9der:B (3.9) BS01 MG N/A GO:0001525 ... P05106 39366965
    955784 9der:B (3.9) BS02 CA N/A GO:0001525 ... P05106 39366965
    955785 9der:B (3.9) BS03 CA N/A GO:0001525 ... P05106 39366965
    955786 9der:B (3.9) BS04 AGG N/A GO:0001525 ... P05106 39366965
    955787 9des:A (7.0) BS01 dna N/A GO:0000287 ... P9WMQ1 40048277
    955788 9des:B (7.0) BS01 dna N/A GO:0000287 ... P9WMQ1 40048277
    955789 9des:B (7.0) BS02 dna N/A GO:0000287 ... P9WMQ1 40048277
    955790 9det:a (3.0) BS01 A1A4Q N/A GO:0000220 ... Q9HBG4 N/A
    955791 9det:a (3.0) BS02 WJP N/A GO:0000220 ... Q9HBG4 N/A
    955792 9det:c (3.0) BS01 A1A4Q N/A GO:0000139 ... P27449 N/A
    955793 9det:g (3.0) BS01 A1A4Q N/A GO:0000139 ... P27449 N/A
    955794 9det:h (3.0) BS01 A1A4Q N/A GO:0000139 ... P27449 N/A
    955795 9det:i (3.0) BS01 A1A4Q N/A GO:0000139 ... P27449 N/A
    955796 9det:j (3.0) BS01 A1A4Q N/A GO:0000139 ... P27449 N/A
    955797 9det:k (3.0) BS01 A1A4Q N/A GO:0000139 ... P27449 N/A
    955798 9det:l (3.0) BS01 A1A4Q N/A GO:0000139 ... P27449 N/A
    955799 9det:m (3.0) BS01 A1A4Q N/A GO:0000139 ... P27449 N/A
    955800 9det:n (3.0) BS01 A1A4Q N/A GO:0000139 ... P27449 N/A

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).