SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    956401 9dfe:1E (2.6) BS01 rna N/A GO:0003735 ... Q5SHN8 39372947
    956402 9dfe:1E (2.6) BS02 MG N/A GO:0003735 ... Q5SHN8 39372947
    956403 9dfe:1E (2.6) BS03 MG N/A GO:0003735 ... Q5SHN8 39372947
    956404 9dfe:1E (2.6) BS04 MG N/A GO:0003735 ... Q5SHN8 39372947
    956405 9dfe:1E (2.6) BS05 MG N/A GO:0003735 ... Q5SHN8 39372947
    956406 9dfe:1F (2.6) BS01 rna N/A GO:0003735 ... Q5SHN9 39372947
    956407 9dfe:1F (2.6) BS02 MG N/A GO:0003735 ... Q5SHN9 39372947
    956408 9dfe:1F (2.6) BS03 MG N/A GO:0003735 ... Q5SHN9 39372947
    956409 9dfe:1F (2.6) BS04 MG N/A GO:0003735 ... Q5SHN9 39372947
    956410 9dfe:1F (2.6) BS05 MG N/A GO:0003735 ... Q5SHN9 39372947
    956411 9dfe:1F (2.6) BS06 MG N/A GO:0003735 ... Q5SHN9 39372947
    956412 9dfe:1F (2.6) BS07 MG N/A GO:0003735 ... Q5SHN9 39372947
    956413 9dfe:1F (2.6) BS08 MG N/A GO:0003735 ... Q5SHN9 39372947
    956414 9dfe:1F (2.6) BS09 MG N/A GO:0003735 ... Q5SHN9 39372947
    956415 9dfe:1F (2.6) BS10 MG N/A GO:0003735 ... Q5SHN9 39372947
    956416 9dfe:1F (2.6) BS11 MG N/A GO:0003735 ... Q5SHN9 39372947
    956417 9dfe:1F (2.6) BS12 MG N/A GO:0003735 ... Q5SHN9 39372947
    956418 9dfe:1F (2.6) BS13 MG N/A GO:0003735 ... Q5SHN9 39372947
    956419 9dfe:1F (2.6) BS14 MG N/A GO:0003735 ... Q5SHN9 39372947
    956420 9dfe:1G (2.6) BS01 rna N/A GO:0000049 ... Q5SHQ0 39372947
    956421 9dfe:1G (2.6) BS02 rna N/A GO:0000049 ... Q5SHQ0 39372947
    956422 9dfe:1G (2.6) BS03 MG N/A GO:0000049 ... Q5SHQ0 39372947
    956423 9dfe:1G (2.6) BS04 MG N/A GO:0000049 ... Q5SHQ0 39372947
    956424 9dfe:1G (2.6) BS05 MG N/A GO:0000049 ... Q5SHQ0 39372947
    956425 9dfe:1H (2.6) BS01 rna N/A GO:0002181 ... P0DOY8 39372947
    956426 9dfe:1I (2.6) BS01 rna N/A GO:0003735 ... Q5SLQ1 39372947
    956427 9dfe:1N (2.6) BS01 rna N/A GO:0003729 ... P60488 39372947
    956428 9dfe:1N (2.6) BS02 MG N/A GO:0003729 ... P60488 39372947
    956429 9dfe:1N (2.6) BS03 MG N/A GO:0003729 ... P60488 39372947
    956430 9dfe:1O (2.6) BS01 rna N/A GO:0003735 ... Q5SHP8 39372947
    956431 9dfe:1O (2.6) BS02 rna N/A GO:0003735 ... Q5SHP8 39372947
    956432 9dfe:1P (2.6) BS01 rna N/A GO:0003735 ... Q5SHQ7 39372947
    956433 9dfe:1P (2.6) BS02 MG N/A GO:0003735 ... Q5SHQ7 39372947
    956434 9dfe:1P (2.6) BS03 MG N/A GO:0003735 ... Q5SHQ7 39372947
    956435 9dfe:1Q (2.6) BS01 rna N/A GO:0003735 ... P60489 39372947
    956436 9dfe:1Q (2.6) BS02 rna N/A GO:0003735 ... P60489 39372947
    956437 9dfe:1Q (2.6) BS03 MG N/A GO:0003735 ... P60489 39372947
    956438 9dfe:1Q (2.6) BS04 MG N/A GO:0003735 ... P60489 39372947
    956439 9dfe:1Q (2.6) BS05 MG N/A GO:0003735 ... P60489 39372947
    956440 9dfe:1Q (2.6) BS06 MG N/A GO:0003735 ... P60489 39372947
    956441 9dfe:1R (2.6) BS01 rna N/A GO:0003735 ... Q9Z9H5 39372947
    956442 9dfe:1R (2.6) BS02 MG N/A GO:0003735 ... Q9Z9H5 39372947
    956443 9dfe:1R (2.6) BS03 MG N/A GO:0003735 ... Q9Z9H5 39372947
    956444 9dfe:1R (2.6) BS04 MG N/A GO:0003735 ... Q9Z9H5 39372947
    956445 9dfe:1S (2.6) BS01 rna N/A GO:0003735 ... Q5SHQ4 39372947
    956446 9dfe:1S (2.6) BS02 rna N/A GO:0003735 ... Q5SHQ4 39372947
    956447 9dfe:1T (2.6) BS01 rna N/A GO:0003735 ... P60490 39372947
    956448 9dfe:1T (2.6) BS02 rna N/A GO:0003735 ... P60490 39372947
    956449 9dfe:1U (2.6) BS01 rna N/A GO:0000027 ... P60491 39372947
    956450 9dfe:1U (2.6) BS02 MG N/A GO:0000027 ... P60491 39372947
    956451 9dfe:1U (2.6) BS03 MG N/A GO:0000027 ... P60491 39372947
    956452 9dfe:1U (2.6) BS04 MG N/A GO:0000027 ... P60491 39372947
    956453 9dfe:1U (2.6) BS05 MG N/A GO:0000027 ... P60491 39372947
    956454 9dfe:1U (2.6) BS06 MG N/A GO:0000027 ... P60491 39372947
    956455 9dfe:1V (2.6) BS01 rna N/A GO:0003723 ... P60492 39372947
    956456 9dfe:1V (2.6) BS02 MG N/A GO:0003723 ... P60492 39372947
    956457 9dfe:1V (2.6) BS03 MG N/A GO:0003723 ... P60492 39372947
    956458 9dfe:1V (2.6) BS04 MG N/A GO:0003723 ... P60492 39372947
    956459 9dfe:1W (2.6) BS01 rna N/A GO:0003735 ... Q5SHP3 39372947
    956460 9dfe:1W (2.6) BS02 MG N/A GO:0003735 ... Q5SHP3 39372947
    956461 9dfe:1X (2.6) BS01 rna N/A GO:0003735 ... Q5SHP0 39372947
    956462 9dfe:1Y (2.6) BS01 rna N/A GO:0003723 ... Q5SHP9 39372947
    956463 9dfe:1Y (2.6) BS02 ZN N/A GO:0003723 ... Q5SHP9 39372947
    956464 9dfe:1Z (2.6) BS01 rna N/A GO:0003723 ... Q5SHZ1 39372947
    956465 9dfe:1Z (2.6) BS02 rna N/A GO:0003723 ... Q5SHZ1 39372947
    956466 9dfe:1b (2.6) BS01 rna N/A GO:0003735 ... P80371 39372947
    956467 9dfe:1b (2.6) BS02 MG N/A GO:0003735 ... P80371 39372947
    956468 9dfe:1c (2.6) BS01 rna N/A GO:0003676 ... P80372 39372947
    956469 9dfe:1d (2.6) BS01 rna N/A GO:0003723 ... P80373 39372947
    956470 9dfe:1d (2.6) BS02 SF4 N/A GO:0003723 ... P80373 39372947
    956471 9dfe:1e (2.6) BS01 rna N/A GO:0003723 ... Q5SHQ5 39372947
    956472 9dfe:1e (2.6) BS02 MG N/A GO:0003723 ... Q5SHQ5 39372947
    956473 9dfe:1f (2.6) BS01 rna N/A GO:0003735 ... Q5SLP8 39372947
    956474 9dfe:1f (2.6) BS02 MG N/A GO:0003735 ... Q5SLP8 39372947
    956475 9dfe:1g (2.6) BS01 rna N/A GO:0000049 ... P17291 39372947
    956476 9dfe:1h (2.6) BS01 rna N/A GO:0003735 ... P0DOY9 39372947
    956477 9dfe:1i (2.6) BS01 rna N/A GO:0003723 ... P80374 39372947
    956478 9dfe:1j (2.6) BS01 rna N/A GO:0000049 ... Q5SHN7 39372947
    956479 9dfe:1k (2.6) BS01 rna N/A GO:0003735 ... P80376 39372947
    956480 9dfe:1k (2.6) BS02 MG N/A GO:0003735 ... P80376 39372947
    956481 9dfe:1l (2.6) BS01 rna N/A GO:0000049 ... Q5SHN3 39372947
    956482 9dfe:1l (2.6) BS02 MG N/A GO:0000049 ... Q5SHN3 39372947
    956483 9dfe:1m (2.6) BS01 rna N/A GO:0000049 ... P80377 39372947
    956484 9dfe:1m (2.6) BS02 rna N/A GO:0000049 ... P80377 39372947
    956485 9dfe:1m (2.6) BS03 MG N/A GO:0000049 ... P80377 39372947
    956486 9dfe:1n (2.6) BS01 rna N/A GO:0003735 ... P0DOY6 39372947
    956487 9dfe:1n (2.6) BS02 MG N/A GO:0003735 ... P0DOY6 39372947
    956488 9dfe:1n (2.6) BS03 ZN N/A GO:0003735 ... P0DOY6 39372947
    956489 9dfe:1o (2.6) BS01 rna N/A GO:0003735 ... Q5SJ76 39372947
    956490 9dfe:1o (2.6) BS02 rna N/A GO:0003735 ... Q5SJ76 39372947
    956491 9dfe:1p (2.6) BS01 rna N/A GO:0003735 ... Q5SJH3 39372947
    956492 9dfe:1q (2.6) BS01 rna N/A GO:0003735 ... P0DOY7 39372947
    956493 9dfe:1r (2.6) BS01 rna N/A GO:0003735 ... Q5SLQ0 39372947
    956494 9dfe:1s (2.6) BS01 rna N/A GO:0000028 ... Q5SHP2 39372947
    956495 9dfe:1t (2.6) BS01 rna N/A GO:0003723 ... P80380 39372947
    956496 9dfe:1t (2.6) BS02 MG N/A GO:0003723 ... P80380 39372947
    956497 9dfe:1y (2.6) BS01 rna N/A GO:0005515 ... P0AD49 39372947
    956498 9dfe:1y (2.6) BS02 MG N/A GO:0005515 ... P0AD49 39372947
    956499 9dfe:1y (2.6) BS03 MG N/A GO:0005515 ... P0AD49 39372947
    956500 9dfe:1y (2.6) BS04 MG N/A GO:0005515 ... P0AD49 39372947
    956501 9dfe:20 (2.6) BS01 rna N/A GO:0003735 ... P60493 39372947
    956502 9dfe:20 (2.6) BS02 rna N/A GO:0003735 ... P60493 39372947
    956503 9dfe:20 (2.6) BS03 MG N/A GO:0003735 ... P60493 39372947
    956504 9dfe:21 (2.6) BS01 rna N/A GO:0003735 ... P60494 39372947
    956505 9dfe:22 (2.6) BS01 rna N/A GO:0003735 ... Q5SHP6 39372947
    956506 9dfe:23 (2.6) BS01 rna N/A GO:0003735 ... Q5SHQ6 39372947
    956507 9dfe:23 (2.6) BS02 rna N/A GO:0003735 ... Q5SHQ6 39372947
    956508 9dfe:23 (2.6) BS03 MG N/A GO:0003735 ... Q5SHQ6 39372947
    956509 9dfe:24 (2.6) BS01 rna N/A GO:0003735 ... Q5SJE1 39372947
    956510 9dfe:24 (2.6) BS02 ZN N/A GO:0003735 ... Q5SJE1 39372947
    956511 9dfe:25 (2.6) BS01 rna N/A GO:0003735 ... P80339 39372947
    956512 9dfe:25 (2.6) BS02 MG N/A GO:0003735 ... P80339 39372947
    956513 9dfe:25 (2.6) BS03 ZN N/A GO:0003735 ... P80339 39372947
    956514 9dfe:26 (2.6) BS01 rna N/A GO:0003735 ... P35871 39372947
    956515 9dfe:26 (2.6) BS02 ZN N/A GO:0003735 ... P35871 39372947
    956516 9dfe:27 (2.6) BS01 rna N/A GO:0003735 ... P80340 39372947
    956517 9dfe:27 (2.6) BS02 MG N/A GO:0003735 ... P80340 39372947
    956518 9dfe:27 (2.6) BS03 MG N/A GO:0003735 ... P80340 39372947
    956519 9dfe:28 (2.6) BS01 rna N/A GO:0003735 ... Q5SKU1 39372947
    956520 9dfe:29 (2.6) BS01 rna N/A GO:0003735 ... Q5SHR2 39372947
    956521 9dfe:29 (2.6) BS02 ZN N/A GO:0003735 ... Q5SHR2 39372947
    956522 9dfe:2D (2.6) BS01 rna N/A GO:0002181 ... P60405 39372947
    956523 9dfe:2D (2.6) BS02 rna N/A GO:0002181 ... P60405 39372947
    956524 9dfe:2D (2.6) BS03 MG N/A GO:0002181 ... P60405 39372947
    956525 9dfe:2D (2.6) BS04 MG N/A GO:0002181 ... P60405 39372947
    956526 9dfe:2D (2.6) BS05 MG N/A GO:0002181 ... P60405 39372947
    956527 9dfe:2D (2.6) BS06 MG N/A GO:0002181 ... P60405 39372947
    956528 9dfe:2D (2.6) BS07 MG N/A GO:0002181 ... P60405 39372947
    956529 9dfe:2D (2.6) BS08 MG N/A GO:0002181 ... P60405 39372947
    956530 9dfe:2D (2.6) BS09 MG N/A GO:0002181 ... P60405 39372947
    956531 9dfe:2E (2.6) BS01 rna N/A GO:0003735 ... Q5SHN8 39372947
    956532 9dfe:2E (2.6) BS02 MG N/A GO:0003735 ... Q5SHN8 39372947
    956533 9dfe:2E (2.6) BS03 MG N/A GO:0003735 ... Q5SHN8 39372947
    956534 9dfe:2F (2.6) BS01 rna N/A GO:0003735 ... Q5SHN9 39372947
    956535 9dfe:2F (2.6) BS02 MG N/A GO:0003735 ... Q5SHN9 39372947
    956536 9dfe:2F (2.6) BS03 MG N/A GO:0003735 ... Q5SHN9 39372947
    956537 9dfe:2F (2.6) BS04 MG N/A GO:0003735 ... Q5SHN9 39372947
    956538 9dfe:2F (2.6) BS05 MG N/A GO:0003735 ... Q5SHN9 39372947
    956539 9dfe:2G (2.6) BS01 rna N/A GO:0000049 ... Q5SHQ0 39372947
    956540 9dfe:2G (2.6) BS02 rna N/A GO:0000049 ... Q5SHQ0 39372947
    956541 9dfe:2G (2.6) BS03 MG N/A GO:0000049 ... Q5SHQ0 39372947
    956542 9dfe:2G (2.6) BS04 MG N/A GO:0000049 ... Q5SHQ0 39372947
    956543 9dfe:2H (2.6) BS01 rna N/A GO:0002181 ... P0DOY8 39372947
    956544 9dfe:2I (2.6) BS01 rna N/A GO:0003735 ... Q5SLQ1 39372947
    956545 9dfe:2N (2.6) BS01 rna N/A GO:0003729 ... P60488 39372947
    956546 9dfe:2O (2.6) BS01 rna N/A GO:0003735 ... Q5SHP8 39372947
    956547 9dfe:2O (2.6) BS02 rna N/A GO:0003735 ... Q5SHP8 39372947
    956548 9dfe:2P (2.6) BS01 rna N/A GO:0003735 ... Q5SHQ7 39372947
    956549 9dfe:2Q (2.6) BS01 rna N/A GO:0003735 ... P60489 39372947
    956550 9dfe:2Q (2.6) BS02 rna N/A GO:0003735 ... P60489 39372947
    956551 9dfe:2Q (2.6) BS03 MG N/A GO:0003735 ... P60489 39372947
    956552 9dfe:2Q (2.6) BS04 MG N/A GO:0003735 ... P60489 39372947
    956553 9dfe:2R (2.6) BS01 rna N/A GO:0003735 ... Q9Z9H5 39372947
    956554 9dfe:2R (2.6) BS02 MG N/A GO:0003735 ... Q9Z9H5 39372947
    956555 9dfe:2S (2.6) BS01 rna N/A GO:0003735 ... Q5SHQ4 39372947
    956556 9dfe:2S (2.6) BS02 rna N/A GO:0003735 ... Q5SHQ4 39372947
    956557 9dfe:2T (2.6) BS01 rna N/A GO:0003735 ... P60490 39372947
    956558 9dfe:2T (2.6) BS02 rna N/A GO:0003735 ... P60490 39372947
    956559 9dfe:2U (2.6) BS01 rna N/A GO:0000027 ... P60491 39372947
    956560 9dfe:2U (2.6) BS02 MG N/A GO:0000027 ... P60491 39372947
    956561 9dfe:2V (2.6) BS01 rna N/A GO:0003723 ... P60492 39372947
    956562 9dfe:2V (2.6) BS02 MG N/A GO:0003723 ... P60492 39372947
    956563 9dfe:2V (2.6) BS03 MG N/A GO:0003723 ... P60492 39372947
    956564 9dfe:2W (2.6) BS01 rna N/A GO:0003735 ... Q5SHP3 39372947
    956565 9dfe:2W (2.6) BS02 MG N/A GO:0003735 ... Q5SHP3 39372947
    956566 9dfe:2W (2.6) BS03 MG N/A GO:0003735 ... Q5SHP3 39372947
    956567 9dfe:2X (2.6) BS01 rna N/A GO:0003735 ... Q5SHP0 39372947
    956568 9dfe:2Y (2.6) BS01 rna N/A GO:0003723 ... Q5SHP9 39372947
    956569 9dfe:2Y (2.6) BS02 ZN N/A GO:0003723 ... Q5SHP9 39372947
    956570 9dfe:2Z (2.6) BS01 rna N/A GO:0003723 ... Q5SHZ1 39372947
    956571 9dfe:2Z (2.6) BS02 rna N/A GO:0003723 ... Q5SHZ1 39372947
    956572 9dfe:2b (2.6) BS01 rna N/A GO:0003735 ... P80371 39372947
    956573 9dfe:2c (2.6) BS01 rna N/A GO:0003676 ... P80372 39372947
    956574 9dfe:2d (2.6) BS01 rna N/A GO:0003723 ... P80373 39372947
    956575 9dfe:2d (2.6) BS02 SF4 N/A GO:0003723 ... P80373 39372947
    956576 9dfe:2e (2.6) BS01 rna N/A GO:0003723 ... Q5SHQ5 39372947
    956577 9dfe:2f (2.6) BS01 rna N/A GO:0003735 ... Q5SLP8 39372947
    956578 9dfe:2f (2.6) BS02 MG N/A GO:0003735 ... Q5SLP8 39372947
    956579 9dfe:2g (2.6) BS01 rna N/A GO:0000049 ... P17291 39372947
    956580 9dfe:2h (2.6) BS01 rna N/A GO:0003735 ... P0DOY9 39372947
    956581 9dfe:2i (2.6) BS01 rna N/A GO:0003723 ... P80374 39372947
    956582 9dfe:2j (2.6) BS01 rna N/A GO:0000049 ... Q5SHN7 39372947
    956583 9dfe:2k (2.6) BS01 rna N/A GO:0003735 ... P80376 39372947
    956584 9dfe:2k (2.6) BS02 MG N/A GO:0003735 ... P80376 39372947
    956585 9dfe:2l (2.6) BS01 rna N/A GO:0000049 ... Q5SHN3 39372947
    956586 9dfe:2l (2.6) BS02 MG N/A GO:0000049 ... Q5SHN3 39372947
    956587 9dfe:2m (2.6) BS01 rna N/A GO:0000049 ... P80377 39372947
    956588 9dfe:2m (2.6) BS02 rna N/A GO:0000049 ... P80377 39372947
    956589 9dfe:2n (2.6) BS01 rna N/A GO:0003735 ... P0DOY6 39372947
    956590 9dfe:2n (2.6) BS02 ZN N/A GO:0003735 ... P0DOY6 39372947
    956591 9dfe:2o (2.6) BS01 rna N/A GO:0003735 ... Q5SJ76 39372947
    956592 9dfe:2o (2.6) BS02 rna N/A GO:0003735 ... Q5SJ76 39372947
    956593 9dfe:2p (2.6) BS01 rna N/A GO:0003735 ... Q5SJH3 39372947
    956594 9dfe:2q (2.6) BS01 rna N/A GO:0003735 ... P0DOY7 39372947
    956595 9dfe:2r (2.6) BS01 rna N/A GO:0003735 ... Q5SLQ0 39372947
    956596 9dfe:2s (2.6) BS01 rna N/A GO:0000028 ... Q5SHP2 39372947
    956597 9dfe:2t (2.6) BS01 rna N/A GO:0003723 ... P80380 39372947
    956598 9dfe:2t (2.6) BS02 MG N/A GO:0003723 ... P80380 39372947
    956599 9dfe:2y (2.6) BS01 rna N/A GO:0005515 ... P0AD49 39372947
    956600 9dff:A (2.59) BS01 GCD N/A GO:0005540 ... P16112 40273987

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).