SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    956801 9dgv:Y (8.8) BS02 ZN N/A GO:0001725 ... A0A4X1TB62 39803430
    956802 9dgv:Y (8.8) BS03 ZN N/A GO:0001725 ... A0A4X1TB62 39803430
    956803 9dgw:A (1.72) BS01 CTP N/A GO:0003824 ... G9MQB8 40373765
    956804 9dgw:A (1.72) BS02 SF4 N/A GO:0003824 ... G9MQB8 40373765
    956805 9dgw:A (1.72) BS03 SAM N/A GO:0003824 ... G9MQB8 40373765
    956806 9dgw:B (1.72) BS01 SF4 N/A GO:0003824 ... G9MQB8 40373765
    956807 9dgw:B (1.72) BS02 SAM N/A GO:0003824 ... G9MQB8 40373765
    956808 9dgw:B (1.72) BS03 CTP N/A GO:0003824 ... G9MQB8 40373765
    956809 9dgw:C (1.72) BS01 SAM N/A GO:0003824 ... G9MQB8 40373765
    956810 9dgw:C (1.72) BS02 CTP N/A GO:0003824 ... G9MQB8 40373765
    956811 9dgw:C (1.72) BS03 SF4 N/A GO:0003824 ... G9MQB8 40373765
    956812 9dgx:A (1.691) BS01 ZN N/A N/A N/A N/A
    956813 9dgx:A (1.691) BS02 CA N/A N/A N/A N/A
    956814 9dgx:B (1.691) BS01 ZN N/A N/A N/A N/A
    956815 9dgx:B (1.691) BS02 CA N/A N/A N/A N/A
    956816 9dgy:C (7.0) BS01 dna N/A GO:0000287 ... P9WMQ1 40048277
    956817 9dgy:C (7.0) BS02 dna N/A GO:0000287 ... P9WMQ1 40048277
    956818 9dh0:A (2.38) BS01 A1BCU N/A GO:0001702 ... O60701 39680853
    956819 9dh0:B (2.38) BS01 A1BCU N/A GO:0001702 ... O60701 39680853
    956820 9dh0:C (2.38) BS01 A1BCU N/A GO:0001702 ... O60701 39680853
    956821 9dh0:F (2.38) BS01 A1BCU N/A GO:0001702 ... O60701 39680853
    956822 9dh3:A (3.76) BS01 ADP N/A GO:0005515 ... P0AEX9
    Q96P20
    39653810
    956823 9dh3:A (3.76) BS02 A1A4L N/A GO:0005515 ... P0AEX9
    Q96P20
    39653810
    956824 9dh3:B (3.76) BS01 ADP N/A GO:0005515 ... P0AEX9
    Q96P20
    39653810
    956825 9dh3:B (3.76) BS02 A1A4L N/A GO:0005515 ... P0AEX9
    Q96P20
    39653810
    956826 9dh3:C (3.76) BS01 ADP N/A GO:0005515 ... P0AEX9
    Q96P20
    39653810
    956827 9dh3:C (3.76) BS02 A1A4L N/A GO:0005515 ... P0AEX9
    Q96P20
    39653810
    956828 9dh3:D (3.76) BS01 ADP N/A GO:0005515 ... P0AEX9
    Q96P20
    39653810
    956829 9dh3:D (3.76) BS02 A1A4L N/A GO:0005515 ... P0AEX9
    Q96P20
    39653810
    956830 9dh4:A (3.3) BS01 PO4 N/A N/A A0A1G5Q840 40893210
    956831 9dh4:A (3.3) BS02 TYR N/A N/A A0A1G5Q840 40893210
    956832 9dh4:B (3.3) BS01 PO4 N/A N/A A0A1G5Q840 40893210
    956833 9dh5:A (2.6) BS01 ADP N/A GO:0001673 ... Q14204 40263469
    956834 9dh5:A (2.6) BS02 ATP N/A GO:0001673 ... Q14204 40263469
    956835 9dh5:A (2.6) BS03 ADP N/A GO:0001673 ... Q14204 40263469
    956836 9dh5:A (2.6) BS04 ADP N/A GO:0001673 ... Q14204 40263469
    956837 9dh5:A (2.6) BS05 MG N/A GO:0001673 ... Q14204 40263469
    956838 9dh6:A (3.4) BS01 ADP N/A GO:0001673 ... Q14204 40263469
    956839 9dh6:A (3.4) BS02 ATP N/A GO:0001673 ... Q14204 40263469
    956840 9dh6:A (3.4) BS03 ADP N/A GO:0001673 ... Q14204 40263469
    956841 9dh6:A (3.4) BS04 ADP N/A GO:0001673 ... Q14204 40263469
    956842 9dh7:A (3.4) BS01 ADP N/A GO:0001673 ... Q14204 40263469
    956843 9dh7:A (3.4) BS02 ATP N/A GO:0001673 ... Q14204 40263469
    956844 9dh7:A (3.4) BS03 ADP N/A GO:0001673 ... Q14204 40263469
    956845 9dh7:A (3.4) BS04 ADP N/A GO:0001673 ... Q14204 40263469
    956846 9dh7:A (3.4) BS05 MG N/A GO:0001673 ... Q14204 40263469
    956847 9dh8:A (3.5) BS01 ADP N/A GO:0001673 ... Q14204 40263469
    956848 9dh8:A (3.5) BS02 ATP N/A GO:0001673 ... Q14204 40263469
    956849 9dh8:A (3.5) BS03 ADP N/A GO:0001673 ... Q14204 40263469
    956850 9dh8:A (3.5) BS04 ADP N/A GO:0001673 ... Q14204 40263469
    956851 9dh9:A (3.4) BS01 ADP N/A GO:0001673 ... Q14204 40263469
    956852 9dh9:A (3.4) BS02 ATP N/A GO:0001673 ... Q14204 40263469
    956853 9dh9:A (3.4) BS03 ANP N/A GO:0001673 ... Q14204 40263469
    956854 9dh9:A (3.4) BS04 ADP N/A GO:0001673 ... Q14204 40263469
    956855 9dh9:A (3.4) BS05 MG N/A GO:0001673 ... Q14204 40263469
    956856 9dha:A (3.6) BS01 ADP N/A GO:0001673 ... Q14204 40263469
    956857 9dha:A (3.6) BS02 ATP N/A GO:0001673 ... Q14204 40263469
    956858 9dha:A (3.6) BS03 ANP N/A GO:0001673 ... Q14204 40263469
    956859 9dha:A (3.6) BS04 ADP N/A GO:0001673 ... Q14204 40263469
    956860 9dha:A (3.6) BS05 MG N/A GO:0001673 ... Q14204 40263469
    956861 9dhb:A (1.96) BS01 PLG N/A GO:0004372 ... A0A0R4J3C9 N/A
    956862 9dhb:A (1.96) BS02 FFO N/A GO:0004372 ... A0A0R4J3C9 N/A
    956863 9dhb:A (1.96) BS03 PLG N/A GO:0004372 ... A0A0R4J3C9 N/A
    956864 9dhb:A (1.96) BS04 FFO N/A GO:0004372 ... A0A0R4J3C9 N/A
    956865 9dhb:B (1.96) BS01 PLG N/A GO:0004372 ... A0A0R4J3C9 N/A
    956866 9dhb:B (1.96) BS02 FFO N/A GO:0004372 ... A0A0R4J3C9 N/A
    956867 9dhb:B (1.96) BS03 PLG N/A GO:0004372 ... A0A0R4J3C9 N/A
    956868 9dhb:B (1.96) BS04 FFO N/A GO:0004372 ... A0A0R4J3C9 N/A
    956869 9dhb:C (1.96) BS01 PLG N/A GO:0004372 ... A0A0R4J3C9 N/A
    956870 9dhb:C (1.96) BS02 FFO N/A GO:0004372 ... A0A0R4J3C9 N/A
    956871 9dhb:C (1.96) BS03 PLG N/A GO:0004372 ... A0A0R4J3C9 N/A
    956872 9dhb:C (1.96) BS04 FFO N/A GO:0004372 ... A0A0R4J3C9 N/A
    956873 9dhb:D (1.96) BS01 PLG N/A GO:0004372 ... A0A0R4J3C9 N/A
    956874 9dhb:D (1.96) BS02 FFO N/A GO:0004372 ... A0A0R4J3C9 N/A
    956875 9dhb:D (1.96) BS03 PLG N/A GO:0004372 ... A0A0R4J3C9 N/A
    956876 9dhb:D (1.96) BS04 FFO N/A GO:0004372 ... A0A0R4J3C9 N/A
    956877 9dhe:A (3.2) BS01 HEM N/A GO:0006811 ... A0A023L3G7 40634285
    956878 9dhg:A (1.386) BS01 FMN N/A GO:0004152 ... Q02127 39284456
    956879 9dhg:A (1.386) BS02 A1A4P N/A GO:0004152 ... Q02127 39284456
    956880 9dhh:A (1.49) BS01 FMN N/A GO:0004152 ... Q02127 39284456
    956881 9dhh:A (1.49) BS02 A1A4O N/A GO:0004152 ... Q02127 39284456
    956882 9dhi:A (1.38) BS01 FMN N/A GO:0004152 ... Q02127 39284456
    956883 9dhi:A (1.38) BS02 A1A4N N/A GO:0004152 ... Q02127 39284456
    956884 9dhj:A (1.4) BS01 FMN N/A GO:0004152 ... Q02127 39284456
    956885 9dhj:A (1.4) BS02 A1A4M N/A GO:0004152 ... Q02127 39284456
    956886 9dhk:A (2.35) BS01 peptide N/A GO:0000166 ... Q9H9A7 40479515
    956887 9dhk:B (2.35) BS01 peptide N/A GO:0000724 ... Q96E14 40479515
    956888 9dhk:D (2.35) BS01 peptide N/A GO:0000166 ... Q9H9A7 40479515
    956889 9dhk:E (2.35) BS01 peptide N/A GO:0000724 ... Q96E14 40479515
    956890 9dhk:G (2.35) BS01 peptide N/A GO:0000166 ... Q9H9A7 40479515
    956891 9dhk:H (2.35) BS01 peptide N/A GO:0000724 ... Q96E14 40479515
    956892 9dhk:J (2.35) BS01 peptide N/A GO:0000166 ... Q9H9A7 40479515
    956893 9dhk:K (2.35) BS01 peptide N/A GO:0000724 ... Q96E14 40479515
    956894 9dhl:A (1.88) BS01 A1AU5 N/A GO:0008800 ... P00811 39753705
    956895 9dhl:B (1.88) BS01 A1AU5 N/A GO:0008800 ... P00811 39753705
    956896 9dhm:A (3.21) BS01 PO4 N/A N/A A0A1G5Q840 40893210
    956897 9dhm:A (3.21) BS02 I3J N/A N/A A0A1G5Q840 40893210
    956898 9dhm:B (3.21) BS01 PO4 N/A N/A A0A1G5Q840 40893210
    956899 9dhn:A (2.94) BS01 A1A46 N/A N/A A0A1G5Q840 40893210
    956900 9dhn:A (2.94) BS02 PO4 N/A N/A A0A1G5Q840 40893210
    956901 9dhn:B (2.94) BS01 PO4 N/A N/A A0A1G5Q840 40893210
    956902 9dho:A (1.09) BS01 CA N/A GO:0004252 ... P06873 40050283
    956903 9dho:A (1.09) BS02 CA N/A GO:0004252 ... P06873 40050283
    956904 9dhr:A (3.54) BS01 GLU N/A GO:0005216 ... P19491 40140570
    956905 9dhr:B (3.54) BS01 GLU N/A GO:0005216 ... P19491 40140570
    956906 9dhr:C (3.54) BS01 GLU N/A GO:0005216 ... P19491 40140570
    956907 9dhr:D (3.54) BS01 GLU N/A GO:0005216 ... P19491 40140570
    956908 9dhs:A (4.48) BS01 GLU N/A GO:0005216 ... P19491 40140570
    956909 9dhs:B (4.48) BS01 GLU N/A GO:0005216 ... P19491 40140570
    956910 9dhs:C (4.48) BS01 GLU N/A GO:0005216 ... P19491 40140570
    956911 9dhs:D (4.48) BS01 GLU N/A GO:0005216 ... P19491 40140570
    956912 9dht:A (4.31) BS01 GLU N/A GO:0005216 ... P19491 40140570
    956913 9dht:B (4.31) BS01 GLU N/A GO:0005216 ... P19491 40140570
    956914 9dht:C (4.31) BS01 GLU N/A GO:0005216 ... P19491 40140570
    956915 9dht:D (4.31) BS01 GLU N/A GO:0005216 ... P19491 40140570
    956916 9dhw:D (3.35) BS01 FUC N/A N/A O55774 41332666
    956917 9dhw:H (3.35) BS01 MAN N/A N/A N/A 41332666
    956918 9dhw:H (3.35) BS02 MAN N/A N/A N/A 41332666
    956919 9dhx:A (3.1) BS01 rna N/A GO:0000340 ... Q9UKV8 N/A
    956920 9dhx:A (3.1) BS02 rna N/A GO:0000340 ... Q9UKV8 N/A
    956921 9dhx:A (3.1) BS03 MG N/A GO:0000340 ... Q9UKV8 N/A
    956922 9dhz:A (3.1) BS01 TA1 N/A GO:0000226 ... P02554 39516196
    956923 9dhz:A (3.1) BS02 GDP N/A GO:0000226 ... P02554 39516196
    956924 9dhz:B (3.1) BS01 GTP N/A GO:0000226 ... Q2XVP4 39516196
    956925 9dhz:K (3.1) BS01 TA1 N/A GO:0000226 ... P02554 39516196
    956926 9dhz:K (3.1) BS02 GDP N/A GO:0000226 ... P02554 39516196
    956927 9dhz:K (3.1) BS03 GTP N/A GO:0000226 ... P02554 39516196
    956928 9dhz:L (3.1) BS01 GTP N/A GO:0000226 ... Q2XVP4 39516196
    956929 9di0:A (3.1) BS01 ADP N/A GO:0003777 ... P16455
    Q8NI77
    39516196
    956930 9di0:A (3.1) BS02 MG N/A GO:0003777 ... P16455
    Q8NI77
    39516196
    956931 9di0:K (3.1) BS01 TA1 N/A GO:0000226 ... P02554 39516196
    956932 9di0:K (3.1) BS02 GDP N/A GO:0000226 ... P02554 39516196
    956933 9di0:L (3.1) BS01 GTP N/A GO:0000226 ... Q2XVP4 39516196
    956934 9di1:B (2.7) BS01 ZN N/A GO:0004197 ... O94782 N/A
    956935 9di1:B (2.7) BS02 A1IB8 N/A GO:0004197 ... O94782 N/A
    956936 9di1:B (2.7) BS03 A1A4Y N/A GO:0004197 ... O94782 N/A
    956937 9di2:B (2.6) BS01 ZN N/A GO:0004197 ... O94782 N/A
    956938 9di2:B (2.6) BS02 A1A4Y N/A GO:0004197 ... O94782 N/A
    956939 9di3:A (4.1) BS01 ATP N/A GO:0005524 ... P36022 40410592
    956940 9di3:A (4.1) BS02 ADP N/A GO:0005524 ... P36022 40410592
    956941 9di3:A (4.1) BS03 ADP N/A GO:0005524 ... P36022 40410592
    956942 9di3:A (4.1) BS04 ADP N/A GO:0005524 ... P36022 40410592
    956943 9di4:A (2.696) BS01 peptide N/A GO:0000166 ... Q9H9A7 40479515
    956944 9di4:B (2.696) BS01 peptide N/A GO:0000724 ... Q96E14 40479515
    956945 9di4:B (2.696) BS02 ZN N/A GO:0000724 ... Q96E14 40479515
    956946 9di6:A (2.41) BS01 A1A51 N/A GO:0004152 ... Q08210 39710971
    956947 9di6:A (2.41) BS02 FMN N/A GO:0004152 ... Q08210 39710971
    956948 9di6:A (2.41) BS03 OG6 N/A GO:0004152 ... Q08210 39710971
    956949 9di8:A (3.1) BS01 MG N/A GO:0005216 ... Q5QJC5 40593533
    956950 9di8:A (3.1) BS02 CA N/A GO:0005216 ... Q5QJC5 40593533
    956951 9di8:A (3.1) BS03 CA N/A GO:0005216 ... Q5QJC5 40593533
    956952 9di8:B (3.1) BS01 MG N/A GO:0005216 ... Q5QJC5 40593533
    956953 9di8:B (3.1) BS02 CA N/A GO:0005216 ... Q5QJC5 40593533
    956954 9di8:B (3.1) BS03 CA N/A GO:0005216 ... Q5QJC5 40593533
    956955 9di8:C (3.1) BS01 MG N/A GO:0005216 ... Q5QJC5 40593533
    956956 9di8:C (3.1) BS02 CA N/A GO:0005216 ... Q5QJC5 40593533
    956957 9di8:D (3.1) BS01 MG N/A GO:0005216 ... Q5QJC5 40593533
    956958 9di8:D (3.1) BS02 CA N/A GO:0005216 ... Q5QJC5 40593533
    956959 9di8:D (3.1) BS03 CA N/A GO:0005216 ... Q5QJC5 40593533
    956960 9di9:A (2.155) BS01 ADP N/A GO:0004672 ... O14874 39560668
    956961 9di9:A (2.155) BS02 A1A40 N/A GO:0004672 ... O14874 39560668
    956962 9dia:A (2.97) BS01 CA N/A GO:0007155 ... P08648 40489013
    956963 9dia:A (2.97) BS02 CA N/A GO:0007155 ... P08648 40489013
    956964 9dia:A (2.97) BS03 CA N/A GO:0007155 ... P08648 40489013
    956965 9dia:B (2.97) BS01 MN N/A N/A P05556 40489013
    956966 9dia:B (2.97) BS02 MN N/A N/A P05556 40489013
    956967 9die:A (1.85) BS01 A1A43 N/A GO:0005576 ... A0A0D4WV12 N/A
    956968 9die:A (1.85) BS02 A1A43 N/A GO:0005576 ... A0A0D4WV12 N/A
    956969 9die:A (1.85) BS03 A1A44 N/A GO:0005576 ... A0A0D4WV12 N/A
    956970 9die:A (1.85) BS04 MG N/A GO:0005576 ... A0A0D4WV12 N/A
    956971 9die:B (1.85) BS01 A1A43 N/A GO:0005576 ... A0A0D4WV12 N/A
    956972 9die:B (1.85) BS02 A1A43 N/A GO:0005576 ... A0A0D4WV12 N/A
    956973 9die:B (1.85) BS03 A1A44 N/A GO:0005576 ... A0A0D4WV12 N/A
    956974 9die:B (1.85) BS04 MG N/A GO:0005576 ... A0A0D4WV12 N/A
    956975 9dif:A (1.67) BS01 dna N/A N/A A0A2P0QGK5 40473611
    956976 9dif:A (1.67) BS02 4UR N/A N/A A0A2P0QGK5 40473611
    956977 9dif:A (1.67) BS03 ZN N/A N/A A0A2P0QGK5 40473611
    956978 9dif:B (1.67) BS01 4UR N/A N/A A0A2P0QGK5 40473611
    956979 9dif:B (1.67) BS02 4UR N/A N/A A0A2P0QGK5 40473611
    956980 9dif:B (1.67) BS03 ZN N/A N/A A0A2P0QGK5 40473611
    956981 9dih:A (1.94) BS01 dna N/A N/A A0A2P0QGK5 40473611
    956982 9dih:A (1.94) BS02 ZN N/A N/A A0A2P0QGK5 40473611
    956983 9dih:A (1.94) BS03 Y4F N/A N/A A0A2P0QGK5 40473611
    956984 9dih:B (1.94) BS01 Y4F N/A N/A A0A2P0QGK5 40473611
    956985 9dih:B (1.94) BS02 ZN N/A N/A A0A2P0QGK5 40473611
    956986 9dih:B (1.94) BS03 Y4F N/A N/A A0A2P0QGK5 40473611
    956987 9dik:A (2.1) BS01 A1A52 N/A GO:0004152 ... Q08210 39710971
    956988 9dik:A (2.1) BS02 FMN N/A GO:0004152 ... Q08210 39710971
    956989 9dik:A (2.1) BS03 OG6 N/A GO:0004152 ... Q08210 39710971
    956990 9dik:B (2.1) BS01 A1A52 N/A GO:0004152 ... Q08210 39710971
    956991 9dik:B (2.1) BS02 FMN N/A GO:0004152 ... Q08210 39710971
    956992 9dik:B (2.1) BS03 OG6 N/A GO:0004152 ... Q08210 39710971
    956993 9dil:A (3.3) BS01 ADP N/A GO:0000153 ... P55072 40085114
    956994 9dil:A (3.3) BS02 ADP N/A GO:0000153 ... P55072 40085114
    956995 9dil:B (3.3) BS01 ADP N/A GO:0000153 ... P55072 40085114
    956996 9dil:B (3.3) BS02 ADP N/A GO:0000153 ... P55072 40085114
    956997 9dim:B (3.19) BS01 FUC N/A N/A O55774 41332666
    956998 9dim:M (3.19) BS01 MAN N/A N/A N/A 41332666
    956999 9din:A (1.64) BS01 peptide N/A N/A P9WPC9 40126472
    957000 9dio:A (2.7) BS01 SIA N/A GO:0019031 ... A0A8E4ZAK5 39636969

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).