SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    957401 9dmg:D (2.05) BS02 CLR N/A GO:0004888 ... Q07001 40203823
    957402 9dmg:E (2.05) BS01 CLR N/A GO:0004888 ... P11230 40203823
    957403 9dmg:E (2.05) BS02 CLR N/A GO:0004888 ... P11230 40203823
    957404 9dmh:A (2.06) BS01 MAN N/A GO:0004888 ... P02708 40203823
    957405 9dmh:A (2.06) BS02 ACH N/A GO:0004888 ... P02708 40203823
    957406 9dmh:B (2.06) BS01 ACH N/A GO:0004888 ... Q04844 40203823
    957407 9dmh:C (2.06) BS01 ACH N/A GO:0004888 ... P02708 40203823
    957408 9dmh:D (2.06) BS01 ACH N/A GO:0004888 ... Q07001 40203823
    957409 9dmi:A (3.35) BS01 A1A7Q N/A GO:0004672 ... Q5S007 40465731
    957410 9dmj:B (2.19) BS01 CLR N/A GO:0004888 ... Q04844 40203823
    957411 9dmj:E (2.19) BS01 CLR N/A GO:0004888 ... P11230 40203823
    957412 9dmk:B (2.46) BS01 CLR N/A GO:0004888 ... Q04844 40203823
    957413 9dml:I (2.24) BS01 CLR N/A GO:0004888 ... Q04844 40203823
    957414 9dml:I (2.24) BS02 CLR N/A GO:0004888 ... Q04844 40203823
    957415 9dmm:A (1.9) BS01 A1AWR N/A GO:0003924 ... P01116 40391409
    957416 9dmm:A (1.9) BS02 GDP N/A GO:0003924 ... P01116 40391409
    957417 9dmq:A (2.06) BS01 ACH N/A GO:0004888 ... P02708 40203823
    957418 9dmq:B (2.06) BS01 ACH N/A GO:0004888 ... Q04844 40203823
    957419 9dmq:B (2.06) BS02 CLR N/A GO:0004888 ... Q04844 40203823
    957420 9dmq:D (2.06) BS01 CLR N/A GO:0004888 ... Q07001 40203823
    957421 9dmq:D (2.06) BS02 CLR N/A GO:0004888 ... Q07001 40203823
    957422 9dmq:D (2.06) BS03 CLR N/A GO:0004888 ... Q07001 40203823
    957423 9dmq:E (2.06) BS01 CLR N/A GO:0004888 ... P11230 40203823
    957424 9dms:A (1.92) BS01 MAN N/A GO:0004888 ... P02708 40203823
    957425 9dms:B (1.92) BS01 CLR N/A GO:0004888 ... Q04844 40203823
    957426 9dms:C (1.92) BS01 MAN N/A GO:0004888 ... P02708 40203823
    957427 9dms:C (1.92) BS02 CLR N/A GO:0004888 ... P02708 40203823
    957428 9dms:D (1.92) BS01 MAN N/A GO:0004888 ... Q07001 40203823
    957429 9dms:D (1.92) BS02 CLR N/A GO:0004888 ... Q07001 40203823
    957430 9dms:D (1.92) BS03 CLR N/A GO:0004888 ... Q07001 40203823
    957431 9dmt:B (2.18) BS01 CLR N/A GO:0004888 ... Q04844 40203823
    957432 9dmt:C (2.18) BS01 CLR N/A GO:0004888 ... P02708 40203823
    957433 9dmt:D (2.18) BS01 MAN N/A GO:0004888 ... Q07001 40203823
    957434 9dmt:D (2.18) BS02 CLR N/A GO:0004888 ... Q07001 40203823
    957435 9dmt:D (2.18) BS03 CLR N/A GO:0004888 ... Q07001 40203823
    957436 9dmt:E (2.18) BS01 CLR N/A GO:0004888 ... P11230 40203823
    957437 9dmu:A (1.82) BS01 IMP N/A GO:0000166 ... P12268 39567689
    957438 9dmu:A (1.82) BS02 A1A7T N/A GO:0000166 ... P12268 39567689
    957439 9dmu:B (1.82) BS01 IMP N/A GO:0000166 ... P12268 39567689
    957440 9dmu:B (1.82) BS02 A1A7T N/A GO:0000166 ... P12268 39567689
    957441 9dmu:C (1.82) BS01 IMP N/A GO:0000166 ... P12268 39567689
    957442 9dmu:C (1.82) BS02 A1A7T N/A GO:0000166 ... P12268 39567689
    957443 9dmu:D (1.82) BS01 IMP N/A GO:0000166 ... P12268 39567689
    957444 9dmu:D (1.82) BS02 A1A7T N/A GO:0000166 ... P12268 39567689
    957445 9dmu:E (1.82) BS01 IMP N/A GO:0000166 ... P12268 39567689
    957446 9dmu:E (1.82) BS02 A1A7T N/A GO:0000166 ... P12268 39567689
    957447 9dmu:F (1.82) BS01 IMP N/A GO:0000166 ... P12268 39567689
    957448 9dmu:F (1.82) BS02 A1A7T N/A GO:0000166 ... P12268 39567689
    957449 9dmu:G (1.82) BS01 IMP N/A GO:0000166 ... P12268 39567689
    957450 9dmu:G (1.82) BS02 A1A7T N/A GO:0000166 ... P12268 39567689
    957451 9dmu:H (1.82) BS01 IMP N/A GO:0000166 ... P12268 39567689
    957452 9dmu:H (1.82) BS02 A1A7T N/A GO:0000166 ... P12268 39567689
    957453 9dmv:B (2.13) BS01 CLR N/A GO:0004888 ... Q04844 N/A
    957454 9dmv:B (2.13) BS02 CLR N/A GO:0004888 ... Q04844 N/A
    957455 9dmv:D (2.13) BS01 CLR N/A GO:0004888 ... Q07001 N/A
    957456 9dmv:D (2.13) BS02 CLR N/A GO:0004888 ... Q07001 N/A
    957457 9dmv:E (2.13) BS01 CLR N/A GO:0004888 ... P11230 N/A
    957458 9dmw:A (3.7) BS01 ATP N/A GO:0005524 ... P36022 40410592
    957459 9dmw:A (3.7) BS02 ADP N/A GO:0005524 ... P36022 40410592
    957460 9dmw:A (3.7) BS03 ADP N/A GO:0005524 ... P36022 40410592
    957461 9dmw:A (3.7) BS04 ADP N/A GO:0005524 ... P36022 40410592
    957462 9dn3:A (2.25) BS01 A1A7Y N/A GO:0000287 ... Q13572 39922495
    957463 9dn4:A (1.9) BS01 rna N/A N/A N/A 40557870
    957464 9dn4:B (1.9) BS01 rna N/A N/A N/A 40557870
    957465 9dn4:C (1.9) BS01 rna N/A N/A N/A 40557870
    957466 9dn4:D (1.9) BS01 rna N/A N/A N/A 40557870
    957467 9dn5:A (3.3) BS01 ATP N/A GO:0005524 ... P36022 40410592
    957468 9dn5:A (3.3) BS02 ADP N/A GO:0005524 ... P36022 40410592
    957469 9dn5:A (3.3) BS03 ADP N/A GO:0005524 ... P36022 40410592
    957470 9dn5:A (3.3) BS04 ADP N/A GO:0005524 ... P36022 40410592
    957471 9dn5:A (3.3) BS05 MG N/A GO:0005524 ... P36022 40410592
    957472 9dn7:A (3.25) BS01 ATP N/A GO:0005524 ... P36022 40410592
    957473 9dn7:A (3.25) BS02 ADP N/A GO:0005524 ... P36022 40410592
    957474 9dn7:A (3.25) BS03 ADP N/A GO:0005524 ... P36022 40410592
    957475 9dn7:A (3.25) BS04 ADP N/A GO:0005524 ... P36022 40410592
    957476 9dn7:A (3.25) BS05 MG N/A GO:0005524 ... P36022 40410592
    957477 9dnb:A (3.0) BS01 ATP N/A GO:0005524 ... P36022 40410592
    957478 9dnb:A (3.0) BS02 ADP N/A GO:0005524 ... P36022 40410592
    957479 9dnb:A (3.0) BS03 ADP N/A GO:0005524 ... P36022 40410592
    957480 9dnb:A (3.0) BS04 ADP N/A GO:0005524 ... P36022 40410592
    957481 9dnb:A (3.0) BS05 MG N/A GO:0005524 ... P36022 40410592
    957482 9dnm:A (3.47) BS01 ODN N/A GO:0005506 ... P29066 39763753
    957483 9dno:A (1.33) BS01 peptide N/A GO:0008270 ... Q8IWV7 40880185
    957484 9dno:A (1.33) BS02 peptide N/A GO:0008270 ... Q8IWV7 40880185
    957485 9dno:A (1.33) BS03 ZN N/A GO:0008270 ... Q8IWV7 40880185
    957486 9dno:A (1.33) BS04 ZN N/A GO:0008270 ... Q8IWV7 40880185
    957487 9dno:A (1.33) BS05 ZN N/A GO:0008270 ... Q8IWV7 40880185
    957488 9dno:B (1.33) BS01 peptide N/A GO:0008270 ... Q8IWV7 40880185
    957489 9dno:B (1.33) BS02 ZN N/A GO:0008270 ... Q8IWV7 40880185
    957490 9dno:B (1.33) BS03 ZN N/A GO:0008270 ... Q8IWV7 40880185
    957491 9dno:B (1.33) BS04 ZN N/A GO:0008270 ... Q8IWV7 40880185
    957492 9dnp:A (1.22) BS01 peptide N/A GO:0008270 ... Q8IWV8 40880185
    957493 9dnp:A (1.22) BS02 ZN N/A GO:0008270 ... Q8IWV8 40880185
    957494 9dnp:A (1.22) BS03 ZN N/A GO:0008270 ... Q8IWV8 40880185
    957495 9dnp:A (1.22) BS04 ZN N/A GO:0008270 ... Q8IWV8 40880185
    957496 9dnp:B (1.22) BS01 peptide N/A GO:0008270 ... Q8IWV8 40880185
    957497 9dnp:B (1.22) BS02 ZN N/A GO:0008270 ... Q8IWV8 40880185
    957498 9dnp:B (1.22) BS03 ZN N/A GO:0008270 ... Q8IWV8 40880185
    957499 9dnp:B (1.22) BS04 ZN N/A GO:0008270 ... Q8IWV8 40880185
    957500 9dnq:A (1.22) BS01 peptide N/A GO:0008270 ... Q8IWV8 40880185
    957501 9dnq:A (1.22) BS02 ZN N/A GO:0008270 ... Q8IWV8 40880185
    957502 9dnq:A (1.22) BS03 ZN N/A GO:0008270 ... Q8IWV8 40880185
    957503 9dnq:A (1.22) BS04 ZN N/A GO:0008270 ... Q8IWV8 40880185
    957504 9dnq:B (1.22) BS01 peptide N/A GO:0008270 ... Q8IWV8 40880185
    957505 9dnq:B (1.22) BS02 ZN N/A GO:0008270 ... Q8IWV8 40880185
    957506 9dnq:B (1.22) BS03 ZN N/A GO:0008270 ... Q8IWV8 40880185
    957507 9dnq:B (1.22) BS04 ZN N/A GO:0008270 ... Q8IWV8 40880185
    957508 9dnr:A (1.22) BS01 peptide N/A GO:0008270 ... Q8IWV8 40880185
    957509 9dnr:A (1.22) BS02 ZN N/A GO:0008270 ... Q8IWV8 40880185
    957510 9dnr:A (1.22) BS03 ZN N/A GO:0008270 ... Q8IWV8 40880185
    957511 9dnr:A (1.22) BS04 ZN N/A GO:0008270 ... Q8IWV8 40880185
    957512 9dnu:A (2.3) BS01 A1BEG N/A GO:0006508 ... P0DTD1 39948104
    957513 9dnu:A (2.3) BS02 ZN N/A GO:0006508 ... P0DTD1 39948104
    957514 9dnu:A (2.3) BS03 ZN N/A GO:0006508 ... P0DTD1 39948104
    957515 9dnu:A (2.3) BS04 ZN N/A GO:0006508 ... P0DTD1 39948104
    957516 9dnu:A (2.3) BS05 ZN N/A GO:0006508 ... P0DTD1 39948104
    957517 9dnv:A (2.4) BS01 A1BEH N/A GO:0006508 ... P0DTD1 39948104
    957518 9dnv:A (2.4) BS02 ZN N/A GO:0006508 ... P0DTD1 39948104
    957519 9dnv:A (2.4) BS03 ZN N/A GO:0006508 ... P0DTD1 39948104
    957520 9dnv:A (2.4) BS04 ZN N/A GO:0006508 ... P0DTD1 39948104
    957521 9dnw:A (2.9) BS01 CLR N/A GO:0000139 ... P51790 40670814
    957522 9dnw:A (2.9) BS02 CLR N/A GO:0000139 ... P51790 40670814
    957523 9dnw:A (2.9) BS03 A1A8I N/A GO:0000139 ... P51790 40670814
    957524 9dnw:B (2.9) BS01 CLR N/A GO:0000139 ... P51790 40670814
    957525 9dnw:B (2.9) BS02 CLR N/A GO:0000139 ... P51790 40670814
    957526 9dnw:B (2.9) BS03 A1A8I N/A GO:0000139 ... P51790 40670814
    957527 9dnx:A (2.86) BS01 CLR N/A GO:0000139 ... P51790 40670814
    957528 9dnx:A (2.86) BS02 CLR N/A GO:0000139 ... P51790 40670814
    957529 9dnx:A (2.86) BS03 A1A8I N/A GO:0000139 ... P51790 40670814
    957530 9dnx:B (2.86) BS01 A1A8I N/A GO:0005765 ... Q9P0T7 40670814
    957531 9dnx:C (2.86) BS01 CLR N/A GO:0000139 ... P51790 40670814
    957532 9dnx:C (2.86) BS02 CLR N/A GO:0000139 ... P51790 40670814
    957533 9dnx:C (2.86) BS03 A1A8I N/A GO:0000139 ... P51790 40670814
    957534 9dnx:D (2.86) BS01 A1A8I N/A GO:0005765 ... Q9P0T7 40670814
    957535 9dny:A (3.01) BS01 A1A8I N/A GO:0000139 ... P51790 40670814
    957536 9dny:B (3.01) BS01 A1A8I N/A GO:0005765 ... Q9P0T7 40670814
    957537 9dny:C (3.01) BS01 CLR N/A GO:0000139 ... P51790 40670814
    957538 9dny:C (3.01) BS02 CLR N/A GO:0000139 ... P51790 40670814
    957539 9dny:C (3.01) BS03 A1A8I N/A GO:0000139 ... P51790 40670814
    957540 9dny:D (3.01) BS01 A1A8I N/A GO:0005765 ... Q9P0T7 40670814
    957541 9dnz:A (3.16) BS01 CLR N/A GO:0000139 ... P51790 40670814
    957542 9dnz:A (3.16) BS02 CLR N/A GO:0000139 ... P51790 40670814
    957543 9dnz:A (3.16) BS03 A1A8I N/A GO:0000139 ... P51790 40670814
    957544 9dnz:B (3.16) BS01 A1A8I N/A GO:0005765 ... Q9P0T7 40670814
    957545 9dnz:C (3.16) BS01 CLR N/A GO:0000139 ... P51790 40670814
    957546 9dnz:C (3.16) BS02 CLR N/A GO:0000139 ... P51790 40670814
    957547 9dnz:C (3.16) BS03 A1A8I N/A GO:0000139 ... P51790 40670814
    957548 9dnz:D (3.16) BS01 A1A8I N/A GO:0005765 ... Q9P0T7 40670814
    957549 9do0:A (2.54) BS01 CLR N/A GO:0000139 ... P51790 40670814
    957550 9do0:B (2.54) BS01 CLR N/A GO:0000139 ... P51790 40670814
    957551 9do1:A (2.4) BS01 A1BF2 N/A GO:0006508 ... P0DTD1 39948104
    957552 9do1:A (2.4) BS02 ZN N/A GO:0006508 ... P0DTD1 39948104
    957553 9do1:A (2.4) BS03 ZN N/A GO:0006508 ... P0DTD1 39948104
    957554 9do1:A (2.4) BS04 ZN N/A GO:0006508 ... P0DTD1 39948104
    957555 9do2:H (3.45) BS01 MAN N/A N/A N/A 40810533
    957556 9do2:H (3.45) BS02 MAN N/A N/A N/A 40810533
    957557 9do3:A (2.5) BS01 A1BEF N/A GO:0006508 ... P0DTD1 39948104
    957558 9do3:A (2.5) BS02 ZN N/A GO:0006508 ... P0DTD1 39948104
    957559 9do3:A (2.5) BS03 ZN N/A GO:0006508 ... P0DTD1 39948104
    957560 9do3:A (2.5) BS04 ZN N/A GO:0006508 ... P0DTD1 39948104
    957561 9do3:A (2.5) BS05 ZN N/A GO:0006508 ... P0DTD1 39948104
    957562 9do4:B (2.6) BS01 ATP N/A GO:0000166 ... P00971 N/A
    957563 9do5:A (3.0) BS01 A1BEE N/A GO:0006508 ... P0DTD1 39948104
    957564 9do5:A (3.0) BS02 ZN N/A GO:0006508 ... P0DTD1 39948104
    957565 9do5:A (3.0) BS03 ZN N/A GO:0006508 ... P0DTD1 39948104
    957566 9do5:A (3.0) BS04 ZN N/A GO:0006508 ... P0DTD1 39948104
    957567 9do9:A (2.91) BS01 A1A8R N/A GO:0019836 ... P83467 N/A
    957568 9do9:A (2.91) BS02 A1A8R N/A GO:0019836 ... P83467 N/A
    957569 9do9:A (2.91) BS03 A1A8R N/A GO:0019836 ... P83467 N/A
    957570 9do9:B (2.91) BS01 A1A8R N/A GO:0019836 ... P83467 N/A
    957571 9do9:B (2.91) BS02 A1A8R N/A GO:0019836 ... P83467 N/A
    957572 9do9:B (2.91) BS03 A1A8R N/A GO:0019836 ... P83467 N/A
    957573 9do9:B (2.91) BS04 CLR N/A GO:0019836 ... P83467 N/A
    957574 9do9:N (2.91) BS01 A1A8R N/A GO:0019836 ... P83467 N/A
    957575 9do9:N (2.91) BS02 A1A8R N/A GO:0019836 ... P83467 N/A
    957576 9do9:N (2.91) BS03 A1A8R N/A GO:0019836 ... P83467 N/A
    957577 9do9:N (2.91) BS04 CLR N/A GO:0019836 ... P83467 N/A
    957578 9do9:O (2.91) BS01 A1A8R N/A GO:0019836 ... P83467 N/A
    957579 9do9:O (2.91) BS02 A1A8R N/A GO:0019836 ... P83467 N/A
    957580 9do9:O (2.91) BS03 A1A8R N/A GO:0019836 ... P83467 N/A
    957581 9dob:A (2.27) BS01 A1A8R N/A GO:0019836 ... P83467 N/A
    957582 9dob:A (2.27) BS02 A1A8R N/A GO:0019836 ... P83467 N/A
    957583 9dob:A (2.27) BS03 A1A8R N/A GO:0019836 ... P83467 N/A
    957584 9dob:A (2.27) BS04 A1A8R N/A GO:0019836 ... P83467 N/A
    957585 9dob:B (2.27) BS01 A1A8R N/A GO:0019836 ... P83467 N/A
    957586 9dob:B (2.27) BS02 A1A8R N/A GO:0019836 ... P83467 N/A
    957587 9dob:B (2.27) BS03 A1A8R N/A GO:0019836 ... P83467 N/A
    957588 9dob:L (2.27) BS01 A1A8R N/A GO:0019836 ... P83467 N/A
    957589 9dob:L (2.27) BS02 A1A8R N/A GO:0019836 ... P83467 N/A
    957590 9dob:L (2.27) BS03 A1A8R N/A GO:0019836 ... P83467 N/A
    957591 9dob:M (2.27) BS01 A1A8R N/A GO:0019836 ... P83467 N/A
    957592 9dob:M (2.27) BS02 A1A8R N/A GO:0019836 ... P83467 N/A
    957593 9dob:M (2.27) BS03 A1A8R N/A GO:0019836 ... P83467 N/A
    957594 9dob:M (2.27) BS04 A1A8R N/A GO:0019836 ... P83467 N/A
    957595 9doc:A (1.19) BS01 MG N/A GO:0043565 ... P41212
    P58335
    N/A
    957596 9doc:A (1.19) BS02 MG N/A GO:0043565 ... P41212
    P58335
    N/A
    957597 9dod:A (2.5) BS01 A1A79 N/A GO:0000387 ... O14744 39856223
    957598 9doe:A (1.265) BS01 HEM N/A GO:0004497 ... Q2IU02 N/A
    957599 9doe:A (1.265) BS02 ANN N/A GO:0004497 ... Q2IU02 N/A
    957600 9doi:A (2.3) BS01 A1BEL N/A GO:0006508 ... P0DTD1 39948104

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).