SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    957801 9dqz:P (2.9) BS01 CA N/A N/A P98155 N/A
    957802 9dr1:I (3.7) BS01 dna N/A GO:0000345 ... P0A8V2 N/A
    957803 9dr1:I (3.7) BS02 rna N/A GO:0000345 ... P0A8V2 N/A
    957804 9dr1:J (3.7) BS01 dna N/A GO:0000287 ... P0A8T7 N/A
    957805 9dr1:J (3.7) BS02 dna N/A GO:0000287 ... P0A8T7 N/A
    957806 9dr1:J (3.7) BS03 rna N/A GO:0000287 ... P0A8T7 N/A
    957807 9dr1:J (3.7) BS04 MG N/A GO:0000287 ... P0A8T7 N/A
    957808 9dr4:A (1.85) BS01 COA N/A GO:0000287 ... Q2G0S3 40143772
    957809 9dr4:A (1.85) BS02 UTP N/A GO:0000287 ... Q2G0S3 40143772
    957810 9dr5:A (1.71) BS01 ZN N/A GO:0003824 ... A0A0H3KXJ8 N/A
    957811 9dr5:B (1.71) BS01 ZN N/A GO:0003824 ... A0A0H3KXJ8 N/A
    957812 9dr5:C (1.71) BS01 ZN N/A GO:0003824 ... A0A0H3KXJ8 N/A
    957813 9dr5:D (1.71) BS01 ZN N/A GO:0003824 ... A0A0H3KXJ8 N/A
    957814 9dr5:E (1.71) BS01 ZN N/A GO:0003824 ... A0A0H3KXJ8 N/A
    957815 9dr5:F (1.71) BS01 ZN N/A GO:0003824 ... A0A0H3KXJ8 N/A
    957816 9dr5:G (1.71) BS01 ZN N/A GO:0003824 ... A0A0H3KXJ8 N/A
    957817 9dr5:H (1.71) BS01 ZN N/A GO:0003824 ... A0A0H3KXJ8 N/A
    957818 9dr6:A (1.75) BS01 ZN N/A GO:0003824 ... A0A0H3KXJ8 N/A
    957819 9dr6:B (1.75) BS01 ZN N/A GO:0003824 ... A0A0H3KXJ8 N/A
    957820 9dr7:A (2.45) BS01 dna N/A GO:0003684 ... Q9UNA4 40593703
    957821 9dr7:A (2.45) BS02 PO4 N/A GO:0003684 ... Q9UNA4 40593703
    957822 9dr7:A (2.45) BS03 MG N/A GO:0003684 ... Q9UNA4 40593703
    957823 9dr7:A (2.45) BS04 MG N/A GO:0003684 ... Q9UNA4 40593703
    957824 9dr7:A (2.45) BS05 MG N/A GO:0003684 ... Q9UNA4 40593703
    957825 9dr7:A (2.45) BS06 PO4 N/A GO:0003684 ... Q9UNA4 40593703
    957826 9dr8:A (1.42) BS01 FE N/A GO:0003824 ... A0A0H3KXJ8 N/A
    957827 9dr8:B (1.42) BS01 FE N/A GO:0003824 ... A0A0H3KXJ8 N/A
    957828 9dr9:A (2.21) BS01 dna N/A GO:0003684 ... Q9UNA4 40593703
    957829 9dra:A (1.62) BS01 FE N/A GO:0003824 ... A0A0H3KXJ8 N/A
    957830 9dra:A (1.62) BS02 A1BA2 N/A GO:0003824 ... A0A0H3KXJ8 N/A
    957831 9dra:B (1.62) BS01 FE N/A GO:0003824 ... A0A0H3KXJ8 N/A
    957832 9dra:B (1.62) BS02 A1BA2 N/A GO:0003824 ... A0A0H3KXJ8 N/A
    957833 9drb:A (2.36) BS01 dna N/A GO:0003684 ... Q9UNA4 40593703
    957834 9drc:A (2.45) BS01 dna N/A GO:0003684 ... Q9UNA4 40593703
    957835 9drc:A (2.45) BS02 TTP N/A GO:0003684 ... Q9UNA4 40593703
    957836 9drc:A (2.45) BS03 CA N/A GO:0003684 ... Q9UNA4 40593703
    957837 9drc:A (2.45) BS04 CA N/A GO:0003684 ... Q9UNA4 40593703
    957838 9dre:A (1.69) BS01 ADP N/A GO:0005829 ... B5XU49 N/A
    957839 9dre:A (1.69) BS02 ADP N/A GO:0005829 ... B5XU49 N/A
    957840 9dre:B (1.69) BS01 ADP N/A GO:0005829 ... B5XU49 N/A
    957841 9dre:B (1.69) BS02 ADP N/A GO:0005829 ... B5XU49 N/A
    957842 9dre:B (1.69) BS03 MG N/A GO:0005829 ... B5XU49 N/A
    957843 9dre:C (1.69) BS01 ADP N/A GO:0005829 ... B5XU49 N/A
    957844 9dre:C (1.69) BS02 MG N/A GO:0005829 ... B5XU49 N/A
    957845 9dre:C (1.69) BS03 ADP N/A GO:0005829 ... B5XU49 N/A
    957846 9dre:D (1.69) BS01 ADP N/A GO:0005829 ... B5XU49 N/A
    957847 9dre:D (1.69) BS02 ADP N/A GO:0005829 ... B5XU49 N/A
    957848 9dre:E (1.69) BS01 ADP N/A GO:0005829 ... B5XU49 N/A
    957849 9dre:E (1.69) BS02 MG N/A GO:0005829 ... B5XU49 N/A
    957850 9dre:E (1.69) BS03 ADP N/A GO:0005829 ... B5XU49 N/A
    957851 9dre:F (1.69) BS01 ADP N/A GO:0005829 ... B5XU49 N/A
    957852 9dre:F (1.69) BS02 ADP N/A GO:0005829 ... B5XU49 N/A
    957853 9dre:F (1.69) BS03 MG N/A GO:0005829 ... B5XU49 N/A
    957854 9dre:F (1.69) BS04 MG N/A GO:0005829 ... B5XU49 N/A
    957855 9dre:G (1.69) BS01 ADP N/A GO:0005829 ... B5XU49 N/A
    957856 9dre:G (1.69) BS02 MG N/A GO:0005829 ... B5XU49 N/A
    957857 9dre:G (1.69) BS03 ADP N/A GO:0005829 ... B5XU49 N/A
    957858 9dre:H (1.69) BS01 ADP N/A GO:0005829 ... B5XU49 N/A
    957859 9dre:H (1.69) BS02 ADP N/A GO:0005829 ... B5XU49 N/A
    957860 9dre:H (1.69) BS03 MG N/A GO:0005829 ... B5XU49 N/A
    957861 9drf:A (1.78) BS01 DTP N/A GO:0005829 ... B5XU49 N/A
    957862 9drf:A (1.78) BS02 DTP N/A GO:0005829 ... B5XU49 N/A
    957863 9drf:B (1.78) BS01 DTP N/A GO:0005829 ... B5XU49 N/A
    957864 9drf:B (1.78) BS02 DTP N/A GO:0005829 ... B5XU49 N/A
    957865 9drf:C (1.78) BS01 DTP N/A GO:0005829 ... B5XU49 N/A
    957866 9drf:C (1.78) BS02 DTP N/A GO:0005829 ... B5XU49 N/A
    957867 9drf:C (1.78) BS03 MG N/A GO:0005829 ... B5XU49 N/A
    957868 9drf:D (1.78) BS01 DTP N/A GO:0005829 ... B5XU49 N/A
    957869 9drf:D (1.78) BS02 DTP N/A GO:0005829 ... B5XU49 N/A
    957870 9drf:E (1.78) BS01 DTP N/A GO:0005829 ... B5XU49 N/A
    957871 9drf:E (1.78) BS02 DTP N/A GO:0005829 ... B5XU49 N/A
    957872 9drf:F (1.78) BS01 DTP N/A GO:0005829 ... B5XU49 N/A
    957873 9drf:F (1.78) BS02 DTP N/A GO:0005829 ... B5XU49 N/A
    957874 9drf:F (1.78) BS03 MG N/A GO:0005829 ... B5XU49 N/A
    957875 9drf:F (1.78) BS04 MG N/A GO:0005829 ... B5XU49 N/A
    957876 9drf:G (1.78) BS01 DTP N/A GO:0005829 ... B5XU49 N/A
    957877 9drf:G (1.78) BS02 DTP N/A GO:0005829 ... B5XU49 N/A
    957878 9drf:G (1.78) BS03 MG N/A GO:0005829 ... B5XU49 N/A
    957879 9drf:H (1.78) BS01 DTP N/A GO:0005829 ... B5XU49 N/A
    957880 9drf:H (1.78) BS02 DTP N/A GO:0005829 ... B5XU49 N/A
    957881 9drf:H (1.78) BS03 MG N/A GO:0005829 ... B5XU49 N/A
    957882 9drh:A (3.3) BS01 A1BDP N/A GO:0000166 ... Q7X2A0 39912785
    957883 9drh:A (3.3) BS02 FAD N/A GO:0000166 ... Q7X2A0 39912785
    957884 9dri:B (1.85) BS01 A1BC7 N/A N/A N/A 41769737
    957885 9dri:B (1.85) BS02 A1BC7 N/A N/A N/A 41769737
    957886 9dri:C (1.85) BS01 A1BC7 N/A N/A N/A 41769737
    957887 9dri:C (1.85) BS02 A1BC7 N/A N/A N/A 41769737
    957888 9drj:B (2.7) BS01 ZN N/A GO:0008641 ... Q9UBT2 40999065
    957889 9drj:B (2.7) BS02 AMP N/A GO:0008641 ... Q9UBT2 40999065
    957890 9drk:A (2.13) BS01 A1BGE N/A GO:0004077 ... I6YFP0 39823202
    957891 9drk:B (2.13) BS01 A1BGE N/A GO:0004077 ... I6YFP0 39823202
    957892 9drn:A (2.98) BS01 A1BGF N/A GO:0004077 ... I6YFP0 39823202
    957893 9drn:B (2.98) BS01 A1BGF N/A GO:0004077 ... I6YFP0 39823202
    957894 9dro:A (1.54) BS01 A1BA1 N/A N/A Q2FV39 40013487
    957895 9dro:A (1.54) BS02 A1BA1 N/A N/A Q2FV39 40013487
    957896 9dro:B (1.54) BS01 A1BA1 N/A N/A Q2FV39 40013487
    957897 9dro:B (1.54) BS02 A1BA1 N/A N/A Q2FV39 40013487
    957898 9drs:A (2.35) BS01 rna N/A GO:0000049 ... P9WFU3 39919438
    957899 9drs:A (2.35) BS02 AX7 N/A GO:0000049 ... P9WFU3 39919438
    957900 9drs:B (2.35) BS01 rna N/A GO:0000049 ... P9WFU1 39919438
    957901 9drs:B (2.35) BS02 rna N/A GO:0000049 ... P9WFU1 39919438
    957902 9drs:D (2.35) BS01 rna N/A GO:0000049 ... P9WFU3 39919438
    957903 9drs:D (2.35) BS02 AX7 N/A GO:0000049 ... P9WFU3 39919438
    957904 9drs:E (2.35) BS01 rna N/A GO:0000049 ... P9WFU1 39919438
    957905 9drs:E (2.35) BS02 rna N/A GO:0000049 ... P9WFU1 39919438
    957906 9drt:A (2.51) BS01 rna N/A GO:0000049 ... P9WFU3 39919438
    957907 9drt:A (2.51) BS02 A1BA3 N/A GO:0000049 ... P9WFU3 39919438
    957908 9drt:A (2.51) BS03 MG N/A GO:0000049 ... P9WFU3 39919438
    957909 9drt:B (2.51) BS01 rna N/A GO:0000049 ... P9WFU1 39919438
    957910 9drt:B (2.51) BS02 rna N/A GO:0000049 ... P9WFU1 39919438
    957911 9drt:D (2.51) BS01 rna N/A GO:0000049 ... P9WFU3 39919438
    957912 9drt:D (2.51) BS02 A1BA3 N/A GO:0000049 ... P9WFU3 39919438
    957913 9drt:D (2.51) BS03 MG N/A GO:0000049 ... P9WFU3 39919438
    957914 9drt:E (2.51) BS01 rna N/A GO:0000049 ... P9WFU1 39919438
    957915 9drt:E (2.51) BS02 rna N/A GO:0000049 ... P9WFU1 39919438
    957916 9drv:A (2.46) BS01 rna N/A GO:0000049 ... P9WFU3 39919438
    957917 9drv:A (2.46) BS02 2AQ N/A GO:0000049 ... P9WFU3 39919438
    957918 9drv:B (2.46) BS01 rna N/A GO:0000049 ... P9WFU1 39919438
    957919 9drv:B (2.46) BS02 rna N/A GO:0000049 ... P9WFU1 39919438
    957920 9drv:D (2.46) BS01 rna N/A GO:0000049 ... P9WFU3 39919438
    957921 9drv:D (2.46) BS02 2AQ N/A GO:0000049 ... P9WFU3 39919438
    957922 9drv:E (2.46) BS01 rna N/A GO:0000049 ... P9WFU1 39919438
    957923 9drv:E (2.46) BS02 rna N/A GO:0000049 ... P9WFU1 39919438
    957924 9drw:A (1.45) BS01 CA N/A N/A Q99972 N/A
    957925 9drw:B (1.45) BS01 CA N/A N/A Q99972 N/A
    957926 9drw:C (1.45) BS01 CA N/A N/A Q99972 N/A
    957927 9drw:D (1.45) BS01 CA N/A N/A Q99972 N/A
    957928 9drx:A (2.95) BS01 ABU N/A GO:0004888 ... P47870 39843743
    957929 9drx:C (2.95) BS01 ABU N/A GO:0004888 ... P47870 39843743
    957930 9drx:D (2.95) BS01 ABU N/A GO:0004888 ... P14867 39843743
    957931 9drx:D (2.95) BS02 IYJ N/A GO:0004888 ... P14867 39843743
    957932 9drx:E (2.95) BS01 MAN N/A GO:0004888 ... P18507 39843743
    957933 9drz:A (2.7) BS01 GDP N/A GO:0003690 ... A0A077WSJ1 N/A
    957934 9drz:B (2.7) BS01 GDP N/A GO:0003690 ... A0A077WSJ1 N/A
    957935 9drz:C (2.7) BS01 GDP N/A GO:0003690 ... A0A077WSJ1 N/A
    957936 9ds0:A (2.14) BS01 A1BDC N/A GO:0009058 ... Q4WYY5 N/A
    957937 9ds0:A (2.14) BS02 A1BDC N/A GO:0009058 ... Q4WYY5 N/A
    957938 9ds0:B (2.14) BS01 A1BDC N/A GO:0009058 ... Q4WYY5 N/A
    957939 9ds0:B (2.14) BS02 A1BDC N/A GO:0009058 ... Q4WYY5 N/A
    957940 9ds0:C (2.14) BS01 A1BDC N/A GO:0009058 ... Q4WYY5 N/A
    957941 9ds0:C (2.14) BS02 A1BDC N/A GO:0009058 ... Q4WYY5 N/A
    957942 9ds0:D (2.14) BS01 A1BDC N/A GO:0009058 ... Q4WYY5 N/A
    957943 9ds0:D (2.14) BS02 A1BDC N/A GO:0009058 ... Q4WYY5 N/A
    957944 9dse:A (2.08) BS01 HEM N/A N/A Q7VTL8 41371339
    957945 9dse:B (2.08) BS01 HEM N/A N/A Q7VTL8 41371339
    957946 9dse:C (2.08) BS01 HEM N/A N/A Q7VTL8 41371339
    957947 9dsf:A (1.85) BS01 HEM N/A N/A Q7VTL8 41371339
    957948 9dsf:B (1.85) BS01 HEM N/A N/A Q7VTL8 41371339
    957949 9dsf:C (1.85) BS01 HEM N/A N/A Q7VTL8 41371339
    957950 9dsn:A (2.3) BS01 TPP N/A GO:0000287 ... P9WK11 39945237
    957951 9dsn:B (2.3) BS01 TPP N/A GO:0000287 ... P9WK11 39945237
    957952 9dsn:C (2.3) BS01 TPP N/A GO:0000287 ... P9WK11 39945237
    957953 9dsn:C (2.3) BS02 DNA N/A GO:0000287 ... P9WK11 39945237
    957954 9dsn:C (2.3) BS03 MG N/A GO:0000287 ... P9WK11 39945237
    957955 9dsn:D (2.3) BS01 TPP N/A GO:0000287 ... P9WK11 39945237
    957956 9dsn:D (2.3) BS02 DNA N/A GO:0000287 ... P9WK11 39945237
    957957 9dsn:D (2.3) BS03 MG N/A GO:0000287 ... P9WK11 39945237
    957958 9dso:B (2.85) BS01 peptide N/A GO:0000448 ... P53063 40188244
    957959 9dso:B (2.85) BS02 MG N/A GO:0000448 ... P53063 40188244
    957960 9dsq:A (1.99) BS01 TXA N/A GO:0000049 ... Q9WZV6 N/A
    957961 9dsq:B (1.99) BS01 TXA N/A GO:0000049 ... Q9WZV6 N/A
    957962 9dsr:A (2.25) BS01 peptide N/A N/A N/A N/A
    957963 9dsr:B (2.25) BS01 peptide N/A N/A N/A N/A
    957964 9dss:B (2.0) BS01 peptide N/A N/A N/A N/A
    957965 9dss:C (2.0) BS01 peptide N/A N/A N/A N/A
    957966 9dst:C (1.74) BS01 peptide N/A N/A N/A N/A
    957967 9dst:D (1.74) BS01 peptide N/A N/A N/A N/A
    957968 9dsu:B (3.14) BS01 peptide N/A N/A N/A N/A
    957969 9dsu:C (3.14) BS01 peptide N/A N/A N/A N/A
    957970 9dsv:A (2.01) BS01 U6A N/A GO:0000049 ... Q9WZV6 N/A
    957971 9dsv:A (2.01) BS02 ATP N/A GO:0000049 ... Q9WZV6 N/A
    957972 9dsv:B (2.01) BS01 TXA N/A GO:0000049 ... Q9WZV6 N/A
    957973 9dsv:B (2.01) BS02 U6A N/A GO:0000049 ... Q9WZV6 N/A
    957974 9dsv:B (2.01) BS03 ATP N/A GO:0000049 ... Q9WZV6 N/A
    957975 9dsw:A (2.05) BS01 THR N/A GO:0000049 ... Q9WZV6 N/A
    957976 9dsw:B (2.05) BS01 THR N/A GO:0000049 ... Q9WZV6 N/A
    957977 9dsx:A (2.05) BS01 rna N/A GO:0000049 ... P9WFU3 39919438
    957978 9dsx:A (2.05) BS02 A1BCB N/A GO:0000049 ... P9WFU3 39919438
    957979 9dsx:B (2.05) BS01 rna N/A GO:0000049 ... P9WFU1 39919438
    957980 9dsx:B (2.05) BS02 rna N/A GO:0000049 ... P9WFU1 39919438
    957981 9dsx:D (2.05) BS01 rna N/A GO:0000049 ... P9WFU3 39919438
    957982 9dsx:D (2.05) BS02 A1BCB N/A GO:0000049 ... P9WFU3 39919438
    957983 9dsx:E (2.05) BS01 rna N/A GO:0000049 ... P9WFU1 39919438
    957984 9dsx:E (2.05) BS02 rna N/A GO:0000049 ... P9WFU1 39919438
    957985 9dsy:A (1.35) BS01 ZN N/A GO:0030288 ... Q9HU18 N/A
    957986 9dsy:A (1.35) BS02 ZN N/A GO:0030288 ... Q9HU18 N/A
    957987 9dsz:A (1.9) BS01 DTP N/A GO:0005829 ... B5XU49 N/A
    957988 9dsz:A (1.9) BS02 MG N/A GO:0005829 ... B5XU49 N/A
    957989 9dsz:A (1.9) BS03 DTP N/A GO:0005829 ... B5XU49 N/A
    957990 9dsz:B (1.9) BS01 DTP N/A GO:0005829 ... B5XU49 N/A
    957991 9dsz:B (1.9) BS02 DTP N/A GO:0005829 ... B5XU49 N/A
    957992 9dsz:B (1.9) BS03 MG N/A GO:0005829 ... B5XU49 N/A
    957993 9dsz:C (1.9) BS01 DTP N/A GO:0005829 ... B5XU49 N/A
    957994 9dsz:C (1.9) BS02 DTP N/A GO:0005829 ... B5XU49 N/A
    957995 9dsz:D (1.9) BS01 DTP N/A GO:0005829 ... B5XU49 N/A
    957996 9dsz:D (1.9) BS02 DTP N/A GO:0005829 ... B5XU49 N/A
    957997 9dsz:D (1.9) BS03 MG N/A GO:0005829 ... B5XU49 N/A
    957998 9dsz:E (1.9) BS01 DTP N/A GO:0005829 ... B5XU49 N/A
    957999 9dsz:E (1.9) BS02 MG N/A GO:0005829 ... B5XU49 N/A
    958000 9dsz:E (1.9) BS03 DTP N/A GO:0005829 ... B5XU49 N/A

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).