SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    958001 9dsz:F (1.9) BS01 DTP N/A GO:0005829 ... B5XU49 N/A
    958002 9dsz:F (1.9) BS02 DTP N/A GO:0005829 ... B5XU49 N/A
    958003 9dsz:F (1.9) BS03 MG N/A GO:0005829 ... B5XU49 N/A
    958004 9dsz:F (1.9) BS04 MG N/A GO:0005829 ... B5XU49 N/A
    958005 9dsz:G (1.9) BS01 MG N/A GO:0005829 ... B5XU49 N/A
    958006 9dsz:G (1.9) BS02 MG N/A GO:0005829 ... B5XU49 N/A
    958007 9dsz:G (1.9) BS03 DTP N/A GO:0005829 ... B5XU49 N/A
    958008 9dsz:G (1.9) BS04 DTP N/A GO:0005829 ... B5XU49 N/A
    958009 9dsz:H (1.9) BS01 DTP N/A GO:0005829 ... B5XU49 N/A
    958010 9dsz:H (1.9) BS02 DTP N/A GO:0005829 ... B5XU49 N/A
    958011 9dt3:A (2.8) BS01 RXF N/A GO:0000976 ... P04483 N/A
    958012 9dt3:A (2.8) BS02 RXF N/A GO:0000976 ... P04483 N/A
    958013 9dt3:B (2.8) BS01 RXF N/A GO:0000976 ... P04483 N/A
    958014 9dt3:B (2.8) BS02 RXF N/A GO:0000976 ... P04483 N/A
    958015 9dt3:C (2.8) BS01 RXF N/A GO:0000976 ... P04483 N/A
    958016 9dt3:C (2.8) BS02 RXF N/A GO:0000976 ... P04483 N/A
    958017 9dt3:D (2.8) BS01 RXF N/A GO:0000976 ... P04483 N/A
    958018 9dt5:A (2.0) BS01 1CS N/A GO:0000976 ... P04483 N/A
    958019 9dt5:A (2.0) BS02 1CS N/A GO:0000976 ... P04483 N/A
    958020 9dt5:B (2.0) BS01 1CS N/A GO:0000976 ... P04483 N/A
    958021 9dt5:B (2.0) BS02 1CS N/A GO:0000976 ... P04483 N/A
    958022 9dt5:C (2.0) BS01 1CS N/A GO:0000976 ... P04483 N/A
    958023 9dt5:C (2.0) BS02 1CS N/A GO:0000976 ... P04483 N/A
    958024 9dt5:D (2.0) BS01 1CS N/A GO:0000976 ... P04483 N/A
    958025 9dt5:D (2.0) BS02 1CS N/A GO:0000976 ... P04483 N/A
    958026 9dt6:C (1.59) BS01 C5P N/A GO:0005829 ... B5XU49 N/A
    958027 9dt6:D (1.59) BS01 C5P N/A GO:0005829 ... B5XU49 N/A
    958028 9dt6:E (1.59) BS01 C5P N/A GO:0005829 ... B5XU49 N/A
    958029 9dt6:F (1.59) BS01 C5P N/A GO:0005829 ... B5XU49 N/A
    958030 9dt6:F (1.59) BS02 C5P N/A GO:0005829 ... B5XU49 N/A
    958031 9dt6:G (1.59) BS01 C5P N/A GO:0005829 ... B5XU49 N/A
    958032 9dt6:H (1.59) BS01 C5P N/A GO:0005829 ... B5XU49 N/A
    958033 9dt7:A (1.15) BS01 MG N/A GO:0005829 ... B5XU49 N/A
    958034 9dt7:A (1.15) BS02 HSX N/A GO:0005829 ... B5XU49 N/A
    958035 9dt7:A (1.15) BS03 HSX N/A GO:0005829 ... B5XU49 N/A
    958036 9dt7:B (1.15) BS01 MG N/A GO:0005829 ... B5XU49 N/A
    958037 9dt7:B (1.15) BS02 HSX N/A GO:0005829 ... B5XU49 N/A
    958038 9dt7:B (1.15) BS03 HSX N/A GO:0005829 ... B5XU49 N/A
    958039 9dt8:A (1.15) BS01 ADP N/A GO:0005829 ... B5XU49 N/A
    958040 9dt8:A (1.15) BS02 ADP N/A GO:0005829 ... B5XU49 N/A
    958041 9dt8:B (1.15) BS01 ADP N/A GO:0005829 ... B5XU49 N/A
    958042 9dt8:B (1.15) BS02 ADP N/A GO:0005829 ... B5XU49 N/A
    958043 9dta:A (2.1) BS01 A1BBV N/A GO:0045022 ... A4D1P6 N/A
    958044 9dta:B (2.1) BS01 A1BBV N/A GO:0045022 ... A4D1P6 N/A
    958045 9dtb:A (2.31) BS01 A1BBW N/A GO:0045022 ... A4D1P6 N/A
    958046 9dtc:A (1.4) BS01 AR6 N/A GO:0005829 ... B5XU49 N/A
    958047 9dtc:A (1.4) BS02 AMP N/A GO:0005829 ... B5XU49 N/A
    958048 9dtc:A (1.4) BS03 MG N/A GO:0005829 ... B5XU49 N/A
    958049 9dtc:A (1.4) BS04 MG N/A GO:0005829 ... B5XU49 N/A
    958050 9dtc:A (1.4) BS05 AR6 N/A GO:0005829 ... B5XU49 N/A
    958051 9dtc:A (1.4) BS06 AMP N/A GO:0005829 ... B5XU49 N/A
    958052 9dtc:B (1.4) BS01 AR6 N/A GO:0005829 ... B5XU49 N/A
    958053 9dtc:B (1.4) BS02 AMP N/A GO:0005829 ... B5XU49 N/A
    958054 9dtc:B (1.4) BS03 AR6 N/A GO:0005829 ... B5XU49 N/A
    958055 9dtc:B (1.4) BS04 AMP N/A GO:0005829 ... B5XU49 N/A
    958056 9dtc:B (1.4) BS05 MG N/A GO:0005829 ... B5XU49 N/A
    958057 9dtc:B (1.4) BS06 MG N/A GO:0005829 ... B5XU49 N/A
    958058 9dtf:A (2.45) BS01 rna N/A GO:0000049 ... P9WFU3 39919438
    958059 9dtf:A (2.45) BS02 A1BCA N/A GO:0000049 ... P9WFU3 39919438
    958060 9dtf:B (2.45) BS01 rna N/A GO:0000049 ... P9WFU1 39919438
    958061 9dtf:B (2.45) BS02 rna N/A GO:0000049 ... P9WFU1 39919438
    958062 9dtf:D (2.45) BS01 rna N/A GO:0000049 ... P9WFU3 39919438
    958063 9dtf:D (2.45) BS02 A1BCA N/A GO:0000049 ... P9WFU3 39919438
    958064 9dtf:E (2.45) BS01 rna N/A GO:0000049 ... P9WFU1 39919438
    958065 9dtf:E (2.45) BS02 rna N/A GO:0000049 ... P9WFU1 39919438
    958066 9dth:A (1.8) BS01 HEM N/A GO:0004601 ... P02185 41047894
    958067 9dti:A (1.681) BS01 HEM N/A GO:0004601 ... P02185 41047894
    958068 9dtj:A (1.77) BS01 A1A3B N/A N/A N/A 41835567
    958069 9dtk:A (2.27) BS01 FAD N/A GO:0005737 ... A5VRH5 39761724
    958070 9dtk:A (2.27) BS02 EPU N/A GO:0005737 ... A5VRH5 39761724
    958071 9dtp:A (3.11) BS01 MG N/A N/A K0EQQ2 N/A
    958072 9dtp:A (3.11) BS02 TRT N/A N/A K0EQQ2 N/A
    958073 9dtp:B (3.11) BS01 MG N/A N/A K0EQQ2 N/A
    958074 9dtp:B (3.11) BS02 TRT N/A N/A K0EQQ2 N/A
    958075 9dtp:C (3.11) BS01 MG N/A N/A K0EQQ2 N/A
    958076 9dtp:C (3.11) BS02 TRT N/A N/A K0EQQ2 N/A
    958077 9dtp:D (3.11) BS01 MG N/A N/A K0EQQ2 N/A
    958078 9dtp:D (3.11) BS02 TRT N/A N/A K0EQQ2 N/A
    958079 9dtp:E (3.11) BS01 MG N/A N/A K0EQQ2 N/A
    958080 9dtp:E (3.11) BS02 TRT N/A N/A K0EQQ2 N/A
    958081 9dtp:F (3.11) BS01 MG N/A N/A K0EQQ2 N/A
    958082 9dtp:F (3.11) BS02 TRT N/A N/A K0EQQ2 N/A
    958083 9dtp:G (3.11) BS01 MG N/A N/A K0EQQ2 N/A
    958084 9dtp:G (3.11) BS02 TRT N/A N/A K0EQQ2 N/A
    958085 9dtp:H (3.11) BS01 MG N/A N/A K0EQQ2 N/A
    958086 9dtp:H (3.11) BS02 TRT N/A N/A K0EQQ2 N/A
    958087 9dtq:A (2.87) BS01 IHP N/A GO:0000118 ... Q92769 39939763
    958088 9dtq:D (2.87) BS01 IHP N/A N/A Q9UKL0 39939763
    958089 9dtr:A (2.31) BS01 rna N/A GO:0000244 ... P33334 38746449
    958090 9dtr:A (2.31) BS02 rna N/A GO:0000244 ... P33334 38746449
    958091 9dtr:A (2.31) BS03 rna N/A GO:0000244 ... P33334 38746449
    958092 9dtr:A (2.31) BS04 rna N/A GO:0000244 ... P33334 38746449
    958093 9dtr:A (2.31) BS05 rna N/A GO:0000244 ... P33334 38746449
    958094 9dtr:A (2.31) BS06 IHP N/A GO:0000244 ... P33334 38746449
    958095 9dtr:C (2.31) BS01 rna N/A GO:0000244 ... P36048 38746449
    958096 9dtr:C (2.31) BS02 GTP N/A GO:0000244 ... P36048 38746449
    958097 9dtr:C (2.31) BS03 MG N/A GO:0000244 ... P36048 38746449
    958098 9dtr:D (2.31) BS01 rna N/A GO:0000781 ... P53913 38746449
    958099 9dtr:H (2.31) BS01 rna N/A GO:0000398 ... P53333 38746449
    958100 9dtr:K (2.31) BS01 rna N/A GO:0000350 ... P28004 38746449
    958101 9dtr:K (2.31) BS02 rna N/A GO:0000350 ... P28004 38746449
    958102 9dtr:K (2.31) BS03 rna N/A GO:0000350 ... P28004 38746449
    958103 9dtr:L (2.31) BS01 rna N/A GO:0000282 ... P25337 38746449
    958104 9dtr:L (2.31) BS02 rna N/A GO:0000282 ... P25337 38746449
    958105 9dtr:L (2.31) BS03 ZN N/A GO:0000282 ... P25337 38746449
    958106 9dtr:L (2.31) BS04 ZN N/A GO:0000282 ... P25337 38746449
    958107 9dtr:L (2.31) BS05 ZN N/A GO:0000282 ... P25337 38746449
    958108 9dtr:M (2.31) BS01 rna N/A GO:0000387 ... Q12046 38746449
    958109 9dtr:M (2.31) BS02 rna N/A GO:0000387 ... Q12046 38746449
    958110 9dtr:M (2.31) BS03 ZN N/A GO:0000387 ... Q12046 38746449
    958111 9dtr:N (2.31) BS01 rna N/A GO:0000398 ... P38241 38746449
    958112 9dtr:N (2.31) BS02 ZN N/A GO:0000398 ... P38241 38746449
    958113 9dtr:N (2.31) BS03 ZN N/A GO:0000398 ... P38241 38746449
    958114 9dtr:O (2.31) BS01 rna N/A GO:0000350 ... Q03654 38746449
    958115 9dtr:O (2.31) BS02 rna N/A GO:0000350 ... Q03654 38746449
    958116 9dtr:P (2.31) BS01 rna N/A GO:0000398 ... Q03772 38746449
    958117 9dtr:P (2.31) BS02 rna N/A GO:0000398 ... Q03772 38746449
    958118 9dtr:P (2.31) BS03 rna N/A GO:0000398 ... Q03772 38746449
    958119 9dtr:R (2.31) BS01 rna N/A GO:0000398 ... Q03375 38746449
    958120 9dtr:R (2.31) BS02 rna N/A GO:0000398 ... Q03375 38746449
    958121 9dtr:S (2.31) BS01 rna N/A GO:0000245 ... Q12309 38746449
    958122 9dtr:S (2.31) BS02 IHP N/A GO:0000245 ... Q12309 38746449
    958123 9dtr:T (2.31) BS01 peptide N/A GO:0000349 ... Q04048 38746449
    958124 9dtr:V (2.31) BS01 rna N/A GO:0000350 ... P24384 38746449
    958125 9dtr:V (2.31) BS02 rna N/A GO:0000350 ... P24384 38746449
    958126 9dtr:W (2.31) BS01 rna N/A GO:0000398 ... Q08963 38746449
    958127 9dtr:Y (2.31) BS01 rna N/A GO:0000398 ... P40567 38746449
    958128 9dtr:a (2.31) BS01 rna N/A GO:0000350 ... P33411 38746449
    958129 9dtr:b (2.31) BS01 rna N/A GO:0000245 ... P40018 38746449
    958130 9dtr:c (2.31) BS01 ZN N/A GO:0000350 ... Q02775 38746449
    958131 9dtr:d (2.31) BS01 rna N/A GO:0000243 ... P43321 38746449
    958132 9dtr:e (2.31) BS01 rna N/A GO:0000245 ... Q12330 38746449
    958133 9dtr:f (2.31) BS01 rna N/A GO:0000245 ... P54999 38746449
    958134 9dtr:g (2.31) BS01 rna N/A GO:0000245 ... P40204 38746449
    958135 9dtr:h (2.31) BS01 rna N/A GO:0000243 ... Q02260 38746449
    958136 9dtr:j (2.31) BS01 rna N/A GO:0000245 ... Q06217 38746449
    958137 9dtr:k (2.31) BS01 rna N/A GO:0000245 ... P40018 38746449
    958138 9dtr:l (2.31) BS01 rna N/A GO:0000243 ... Q02260 38746449
    958139 9dtr:m (2.31) BS01 rna N/A GO:0000245 ... Q06217 38746449
    958140 9dtr:n (2.31) BS01 rna N/A GO:0000243 ... P43321 38746449
    958141 9dtr:o (2.31) BS01 rna N/A GO:0000348 ... P40968 38746449
    958142 9dtr:o (2.31) BS02 rna N/A GO:0000348 ... P40968 38746449
    958143 9dtr:o (2.31) BS03 rna N/A GO:0000348 ... P40968 38746449
    958144 9dtr:p (2.31) BS01 rna N/A GO:0000245 ... Q12330 38746449
    958145 9dtr:q (2.31) BS01 rna N/A GO:0000245 ... P54999 38746449
    958146 9dtr:r (2.31) BS01 rna N/A GO:0000245 ... P40204 38746449
    958147 9dtr:y (2.31) BS01 rna N/A GO:0000384 ... P53277 38746449
    958148 9dtr:y (2.31) BS02 rna N/A GO:0000384 ... P53277 38746449
    958149 9dts:A (1.69) BS01 rna N/A GO:0000339 ... P60842 39989799
    958150 9dts:A (1.69) BS02 rna N/A GO:0000339 ... P60842 39989799
    958151 9dts:A (1.69) BS03 ANP N/A GO:0000339 ... P60842 39989799
    958152 9dts:A (1.69) BS04 A1BB1 N/A GO:0000339 ... P60842 39989799
    958153 9dts:B (1.69) BS01 rna N/A GO:0000339 ... P60842 39989799
    958154 9dts:B (1.69) BS02 rna N/A GO:0000339 ... P60842 39989799
    958155 9dts:B (1.69) BS03 ANP N/A GO:0000339 ... P60842 39989799
    958156 9dts:B (1.69) BS04 A1BB1 N/A GO:0000339 ... P60842 39989799
    958157 9dts:B (1.69) BS05 A1BB1 N/A GO:0000339 ... P60842 39989799
    958158 9dts:C (1.69) BS01 rna N/A GO:0000339 ... P60842 39989799
    958159 9dts:C (1.69) BS02 rna N/A GO:0000339 ... P60842 39989799
    958160 9dts:C (1.69) BS03 ANP N/A GO:0000339 ... P60842 39989799
    958161 9dts:C (1.69) BS04 A1BB1 N/A GO:0000339 ... P60842 39989799
    958162 9dts:D (1.69) BS01 rna N/A GO:0000339 ... P60842 39989799
    958163 9dts:D (1.69) BS02 rna N/A GO:0000339 ... P60842 39989799
    958164 9dts:D (1.69) BS03 ANP N/A GO:0000339 ... P60842 39989799
    958165 9dts:D (1.69) BS04 A1BB1 N/A GO:0000339 ... P60842 39989799
    958166 9dts:D (1.69) BS05 A1BB1 N/A GO:0000339 ... P60842 39989799
    958167 9dtt:A (3.6) BS01 rna N/A GO:0003968 ... P14340 39677779
    958168 9dtt:A (3.6) BS02 ZN N/A GO:0003968 ... P14340 39677779
    958169 9dtt:A (3.6) BS03 ZN N/A GO:0003968 ... P14340 39677779
    958170 9dtv:A (2.42) BS01 TPP N/A GO:0000287 ... P9WK11 39945237
    958171 9dtv:B (2.42) BS01 TPP N/A GO:0000287 ... P9WK11 39945237
    958172 9dtv:C (2.42) BS01 TPP N/A GO:0000287 ... P9WK11 39945237
    958173 9dtv:C (2.42) BS02 DNA N/A GO:0000287 ... P9WK11 39945237
    958174 9dtv:C (2.42) BS03 MG N/A GO:0000287 ... P9WK11 39945237
    958175 9dtv:D (2.42) BS01 TPP N/A GO:0000287 ... P9WK11 39945237
    958176 9dtv:D (2.42) BS02 DNA N/A GO:0000287 ... P9WK11 39945237
    958177 9dtv:D (2.42) BS03 MG N/A GO:0000287 ... P9WK11 39945237
    958178 9dtw:A (1.39) BS01 A1BB9 N/A GO:0004155 ... P09417 N/A
    958179 9dtw:B (1.39) BS01 A1BB9 N/A GO:0003007 ... P62942 N/A
    958180 9dtx:C (2.11) BS01 A1BB4 N/A N/A P40337 40991405
    958181 9dtx:D (2.11) BS01 A1BB4 N/A GO:0006338 ... P51532 40991405
    958182 9dty:A (3.19) BS01 A1BB4 N/A GO:0006338 ... P51531 40991405
    958183 9dty:B (3.19) BS01 A1BB4 N/A N/A P40337 40991405
    958184 9dty:E (3.19) BS01 A1BB4 N/A GO:0006338 ... P51531 40991405
    958185 9dty:F (3.19) BS01 A1BB4 N/A N/A P40337 40991405
    958186 9dty:I (3.19) BS01 A1BB4 N/A GO:0006338 ... P51531 40991405
    958187 9dty:J (3.19) BS01 A1BB4 N/A N/A P40337 40991405
    958188 9dty:J (3.19) BS02 A1BB4 N/A N/A P40337 40991405
    958189 9dty:M (3.19) BS01 A1BB4 N/A GO:0006338 ... P51531 40991405
    958190 9dty:N (3.19) BS01 A1BB4 N/A N/A P40337 40991405
    958191 9dty:R (3.19) BS01 A1BB4 N/A N/A P40337 40991405
    958192 9dty:U (3.19) BS01 A1BB4 N/A GO:0006338 ... P51531 40991405
    958193 9dty:V (3.19) BS01 A1BB4 N/A N/A P40337 40991405
    958194 9dty:Y (3.19) BS01 A1BB4 N/A GO:0006338 ... P51531 40991405
    958195 9dty:Z (3.19) BS01 A1BB4 N/A N/A P40337 40991405
    958196 9dty:c (3.19) BS01 A1BB4 N/A GO:0006338 ... P51531 40991405
    958197 9dty:d (3.19) BS01 A1BB4 N/A N/A P40337 40991405
    958198 9dty:g (3.19) BS01 A1BB4 N/A GO:0006338 ... P51531 40991405
    958199 9dty:h (3.19) BS01 A1BB4 N/A N/A P40337 40991405
    958200 9dty:k (3.19) BS01 A1BB4 N/A GO:0006338 ... P51531 40991405

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).