SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    959001 9dyi:A (3.03) BS01 GLU N/A GO:0005217 ... Q8NFU1 39737942
    959002 9dyi:A (3.03) BS02 CA N/A GO:0005217 ... Q8NFU1 39737942
    959003 9dyi:B (3.03) BS01 GLU N/A GO:0005217 ... Q8NFU1 39737942
    959004 9dyi:B (3.03) BS02 CA N/A GO:0005217 ... Q8NFU1 39737942
    959005 9dyi:C (3.03) BS01 GLU N/A GO:0005217 ... Q8NFU1 39737942
    959006 9dyi:C (3.03) BS02 CA N/A GO:0005217 ... Q8NFU1 39737942
    959007 9dyi:D (3.03) BS01 GLU N/A GO:0005217 ... Q8NFU1 39737942
    959008 9dyi:D (3.03) BS02 CA N/A GO:0005217 ... Q8NFU1 39737942
    959009 9dyi:E (3.03) BS01 GLU N/A GO:0005217 ... Q8NFU1 39737942
    959010 9dyi:E (3.03) BS02 CA N/A GO:0005217 ... Q8NFU1 39737942
    959011 9dyj:A (2.31) BS01 ABU N/A GO:0005217 ... Q8NFU1 39737942
    959012 9dyj:A (2.31) BS02 CA N/A GO:0005217 ... Q8NFU1 39737942
    959013 9dyj:A (2.31) BS03 ABU N/A GO:0005217 ... Q8NFU1 39737942
    959014 9dyj:B (2.31) BS01 CA N/A GO:0005217 ... Q8NFU1 39737942
    959015 9dyj:B (2.31) BS02 ABU N/A GO:0005217 ... Q8NFU1 39737942
    959016 9dyj:B (2.31) BS03 ABU N/A GO:0005217 ... Q8NFU1 39737942
    959017 9dyj:C (2.31) BS01 ABU N/A GO:0005217 ... Q8NFU1 39737942
    959018 9dyj:C (2.31) BS02 CA N/A GO:0005217 ... Q8NFU1 39737942
    959019 9dyj:C (2.31) BS03 ABU N/A GO:0005217 ... Q8NFU1 39737942
    959020 9dyj:D (2.31) BS01 ABU N/A GO:0005217 ... Q8NFU1 39737942
    959021 9dyj:D (2.31) BS02 CA N/A GO:0005217 ... Q8NFU1 39737942
    959022 9dyj:D (2.31) BS03 ABU N/A GO:0005217 ... Q8NFU1 39737942
    959023 9dyj:E (2.31) BS01 CA N/A GO:0005217 ... Q8NFU1 39737942
    959024 9dyj:E (2.31) BS02 ABU N/A GO:0005217 ... Q8NFU1 39737942
    959025 9dyj:E (2.31) BS03 ABU N/A GO:0005217 ... Q8NFU1 39737942
    959026 9dyk:A (2.27) BS01 CA N/A GO:0005254 ... Q8NFU1 39737942
    959027 9dyk:B (2.27) BS01 CA N/A GO:0005254 ... Q8NFU1 39737942
    959028 9dyk:C (2.27) BS01 CA N/A GO:0005254 ... Q8NFU1 39737942
    959029 9dyk:D (2.27) BS01 CA N/A GO:0005254 ... Q8NFU1 39737942
    959030 9dyk:E (2.27) BS01 CA N/A GO:0005254 ... Q8NFU1 39737942
    959031 9dyl:A (2.6) BS01 CA N/A GO:0005229 ... O76090 39737942
    959032 9dyl:A (2.6) BS02 PAB N/A GO:0005229 ... O76090 39737942
    959033 9dyl:A (2.6) BS03 PAB N/A GO:0005229 ... O76090 39737942
    959034 9dyl:B (2.6) BS01 CA N/A GO:0005229 ... O76090 39737942
    959035 9dyl:B (2.6) BS02 PAB N/A GO:0005229 ... O76090 39737942
    959036 9dyl:B (2.6) BS03 PAB N/A GO:0005229 ... O76090 39737942
    959037 9dyl:C (2.6) BS01 PAB N/A GO:0005229 ... O76090 39737942
    959038 9dyl:C (2.6) BS02 CA N/A GO:0005229 ... O76090 39737942
    959039 9dyl:C (2.6) BS03 PAB N/A GO:0005229 ... O76090 39737942
    959040 9dyl:D (2.6) BS01 PAB N/A GO:0005229 ... O76090 39737942
    959041 9dyl:D (2.6) BS02 CA N/A GO:0005229 ... O76090 39737942
    959042 9dyl:D (2.6) BS03 PAB N/A GO:0005229 ... O76090 39737942
    959043 9dyl:E (2.6) BS01 PAB N/A GO:0005229 ... O76090 39737942
    959044 9dyl:E (2.6) BS02 CA N/A GO:0005229 ... O76090 39737942
    959045 9dyl:E (2.6) BS03 PAB N/A GO:0005229 ... O76090 39737942
    959046 9dym:A (2.67) BS01 PAB N/A GO:0005229 ... O76090 39737942
    959047 9dym:A (2.67) BS02 CA N/A GO:0005229 ... O76090 39737942
    959048 9dym:A (2.67) BS03 PAB N/A GO:0005229 ... O76090 39737942
    959049 9dym:B (2.67) BS01 CA N/A GO:0005229 ... O76090 39737942
    959050 9dym:B (2.67) BS02 PAB N/A GO:0005229 ... O76090 39737942
    959051 9dym:C (2.67) BS01 PAB N/A GO:0005229 ... O76090 39737942
    959052 9dym:C (2.67) BS02 CA N/A GO:0005229 ... O76090 39737942
    959053 9dym:D (2.67) BS01 CA N/A GO:0005229 ... O76090 39737942
    959054 9dym:D (2.67) BS02 PAB N/A GO:0005229 ... O76090 39737942
    959055 9dym:E (2.67) BS01 CA N/A GO:0005229 ... O76090 39737942
    959056 9dym:E (2.67) BS02 PAB N/A GO:0005229 ... O76090 39737942
    959057 9dyn:A (2.44) BS01 CA N/A GO:0005217 ... Q8NFU1 39737942
    959058 9dyn:A (2.44) BS02 PAB N/A GO:0005217 ... Q8NFU1 39737942
    959059 9dyn:A (2.44) BS03 PAB N/A GO:0005217 ... Q8NFU1 39737942
    959060 9dyn:A (2.44) BS04 CA N/A GO:0005217 ... Q8NFU1 39737942
    959061 9dyn:B (2.44) BS01 PAB N/A GO:0005217 ... Q8NFU1 39737942
    959062 9dyn:B (2.44) BS02 CA N/A GO:0005217 ... Q8NFU1 39737942
    959063 9dyn:B (2.44) BS03 PAB N/A GO:0005217 ... Q8NFU1 39737942
    959064 9dyn:B (2.44) BS04 CA N/A GO:0005217 ... Q8NFU1 39737942
    959065 9dyn:C (2.44) BS01 CA N/A GO:0005217 ... Q8NFU1 39737942
    959066 9dyn:C (2.44) BS02 PAB N/A GO:0005217 ... Q8NFU1 39737942
    959067 9dyn:C (2.44) BS03 CA N/A GO:0005217 ... Q8NFU1 39737942
    959068 9dyn:C (2.44) BS04 PAB N/A GO:0005217 ... Q8NFU1 39737942
    959069 9dyn:D (2.44) BS01 CA N/A GO:0005217 ... Q8NFU1 39737942
    959070 9dyn:D (2.44) BS02 CA N/A GO:0005217 ... Q8NFU1 39737942
    959071 9dyn:D (2.44) BS03 PAB N/A GO:0005217 ... Q8NFU1 39737942
    959072 9dyn:D (2.44) BS04 PAB N/A GO:0005217 ... Q8NFU1 39737942
    959073 9dyn:E (2.44) BS01 CA N/A GO:0005217 ... Q8NFU1 39737942
    959074 9dyn:E (2.44) BS02 CA N/A GO:0005217 ... Q8NFU1 39737942
    959075 9dyn:E (2.44) BS03 PAB N/A GO:0005217 ... Q8NFU1 39737942
    959076 9dyn:E (2.44) BS04 PAB N/A GO:0005217 ... Q8NFU1 39737942
    959077 9dyo:A (2.57) BS01 CA N/A GO:0005217 ... Q8NFU1 39737942
    959078 9dyo:B (2.57) BS01 CA N/A GO:0005217 ... Q8NFU1 39737942
    959079 9dyo:C (2.57) BS01 CA N/A GO:0005217 ... Q8NFU1 39737942
    959080 9dyo:D (2.57) BS01 CA N/A GO:0005217 ... Q8NFU1 39737942
    959081 9dyo:E (2.57) BS01 CA N/A GO:0005217 ... Q8NFU1 39737942
    959082 9dyp:A (1.5) BS01 MG N/A N/A N/A N/A
    959083 9dyp:B (1.5) BS01 MG N/A N/A N/A N/A
    959084 9dyp:C (1.5) BS01 MG N/A N/A N/A N/A
    959085 9dyp:D (1.5) BS01 MG N/A N/A N/A N/A
    959086 9dyq:A (2.05) BS01 CA N/A N/A O75923 N/A
    959087 9dyq:A (2.05) BS02 CA N/A N/A O75923 N/A
    959088 9dyq:A (2.05) BS03 CA N/A N/A O75923 N/A
    959089 9dyq:B (2.05) BS01 CA N/A N/A O75923 N/A
    959090 9dyq:B (2.05) BS02 CA N/A N/A O75923 N/A
    959091 9dyq:B (2.05) BS03 CA N/A N/A O75923 N/A
    959092 9dyr:A (2.66) BS01 CAP N/A N/A N/A N/A
    959093 9dyr:A (2.66) BS02 MG N/A N/A N/A N/A
    959094 9dyr:A (2.66) BS03 MG N/A N/A N/A N/A
    959095 9dyr:A (2.66) BS04 MG N/A N/A N/A N/A
    959096 9dyr:A (2.66) BS05 CAP N/A N/A N/A N/A
    959097 9dyr:B (2.66) BS01 CAP N/A N/A N/A N/A
    959098 9dyr:B (2.66) BS02 CAP N/A N/A N/A N/A
    959099 9dyr:B (2.66) BS03 MG N/A N/A N/A N/A
    959100 9dyr:B (2.66) BS04 MG N/A N/A N/A N/A
    959101 9dyr:B (2.66) BS05 MG N/A N/A N/A N/A
    959102 9dyr:C (2.66) BS01 MG N/A N/A N/A N/A
    959103 9dyr:C (2.66) BS02 CAP N/A N/A N/A N/A
    959104 9dyr:C (2.66) BS03 MG N/A N/A N/A N/A
    959105 9dyr:C (2.66) BS04 CAP N/A N/A N/A N/A
    959106 9dyr:C (2.66) BS05 MG N/A N/A N/A N/A
    959107 9dyr:D (2.66) BS01 MG N/A N/A N/A N/A
    959108 9dyr:D (2.66) BS02 CAP N/A N/A N/A N/A
    959109 9dyr:D (2.66) BS03 MG N/A N/A N/A N/A
    959110 9dyr:D (2.66) BS04 CAP N/A N/A N/A N/A
    959111 9dyr:E (2.66) BS01 MG N/A N/A N/A N/A
    959112 9dyr:E (2.66) BS02 CAP N/A N/A N/A N/A
    959113 9dyr:E (2.66) BS03 CAP N/A N/A N/A N/A
    959114 9dyr:E (2.66) BS04 MG N/A N/A N/A N/A
    959115 9dyr:F (2.66) BS01 CAP N/A N/A N/A N/A
    959116 9dyr:F (2.66) BS02 CAP N/A N/A N/A N/A
    959117 9dyr:F (2.66) BS03 MG N/A N/A N/A N/A
    959118 9dyr:F (2.66) BS04 MG N/A N/A N/A N/A
    959119 9dyr:G (2.66) BS01 MG N/A N/A N/A N/A
    959120 9dyr:G (2.66) BS02 CAP N/A N/A N/A N/A
    959121 9dyr:G (2.66) BS03 MG N/A N/A N/A N/A
    959122 9dyr:G (2.66) BS04 MG N/A N/A N/A N/A
    959123 9dyr:G (2.66) BS05 CAP N/A N/A N/A N/A
    959124 9dyr:H (2.66) BS01 CAP N/A N/A N/A N/A
    959125 9dyr:H (2.66) BS02 MG N/A N/A N/A N/A
    959126 9dyr:H (2.66) BS03 CAP N/A N/A N/A N/A
    959127 9dyr:I (2.66) BS01 CAP N/A N/A N/A N/A
    959128 9dyr:I (2.66) BS02 MG N/A N/A N/A N/A
    959129 9dyr:I (2.66) BS03 CAP N/A N/A N/A N/A
    959130 9dyr:I (2.66) BS04 MG N/A N/A N/A N/A
    959131 9dyr:J (2.66) BS01 CAP N/A N/A N/A N/A
    959132 9dyr:J (2.66) BS02 MG N/A N/A N/A N/A
    959133 9dyr:J (2.66) BS03 MG N/A N/A N/A N/A
    959134 9dyr:J (2.66) BS04 CAP N/A N/A N/A N/A
    959135 9dyr:J (2.66) BS05 MG N/A N/A N/A N/A
    959136 9dyt:A (1.8) BS01 MN N/A N/A Q5UNV6 40691173
    959137 9dyt:B (1.8) BS01 MN N/A N/A Q5UNV6 40691173
    959138 9dz3:A (2.3) BS01 3Q8 N/A GO:0006355 ... Q09E27 40506475
    959139 9dz3:B (2.3) BS01 3Q8 N/A GO:0006355 ... Q09E27 40506475
    959140 9dz6:B (3.1) BS01 GTP N/A GO:0003924 ... P32835 40089503
    959141 9dz6:B (3.1) BS02 MG N/A GO:0003924 ... P32835 40089503
    959142 9dz7:A (2.487) BS01 PLG N/A GO:0003870 ... P09950 N/A
    959143 9dz7:A (2.487) BS02 PLG N/A GO:0003870 ... P09950 N/A
    959144 9dz7:B (2.487) BS01 PLG N/A GO:0003870 ... P09950 N/A
    959145 9dz7:B (2.487) BS02 PLG N/A GO:0003870 ... P09950 N/A
    959146 9dz7:C (2.487) BS01 PLG N/A GO:0003870 ... P09950 N/A
    959147 9dz7:C (2.487) BS02 PLG N/A GO:0003870 ... P09950 N/A
    959148 9dz7:D (2.487) BS01 PLG N/A GO:0003870 ... P09950 N/A
    959149 9dz7:D (2.487) BS02 PLG N/A GO:0003870 ... P09950 N/A
    959150 9dz7:E (2.487) BS01 PLG N/A GO:0003870 ... P09950 N/A
    959151 9dz7:E (2.487) BS02 PLG N/A GO:0003870 ... P09950 N/A
    959152 9dz7:F (2.487) BS01 PLG N/A GO:0003870 ... P09950 N/A
    959153 9dz7:F (2.487) BS02 PLG N/A GO:0003870 ... P09950 N/A
    959154 9dza:A (1.4) BS01 EL5 N/A GO:0006355 ... Q09E27 40506475
    959155 9dza:B (1.4) BS01 EL5 N/A GO:0006355 ... Q09E27 40506475
    959156 9dzf:A (2.7) BS01 peptide N/A GO:0001653 ... P16066 N/A
    959157 9dzf:B (2.7) BS01 peptide N/A GO:0001653 ... P16066 N/A
    959158 9dzh:A (3.0) BS01 peptide N/A N/A P16066 N/A
    959159 9dzh:B (3.0) BS01 peptide N/A N/A P16066 N/A
    959160 9dzj:A (2.7) BS01 peptide N/A N/A P16066 N/A
    959161 9dzj:B (2.7) BS01 peptide N/A N/A P16066 N/A
    959162 9dzm:C (2.54) BS01 dna N/A GO:0000981 ... P09086 39960871
    959163 9dzm:C (2.54) BS02 dna N/A GO:0000981 ... P09086 39960871
    959164 9dzm:D (2.54) BS01 dna N/A GO:0000981 ... P09086 39960871
    959165 9dzm:D (2.54) BS02 dna N/A GO:0000981 ... P09086 39960871
    959166 9dzm:E (2.54) BS01 dna N/A GO:0000981 ... P09086 39960871
    959167 9dzm:E (2.54) BS02 dna N/A GO:0000981 ... P09086 39960871
    959168 9dzm:F (2.54) BS01 dna N/A GO:0000981 ... P09086 39960871
    959169 9dzm:F (2.54) BS02 dna N/A GO:0000981 ... P09086 39960871
    959170 9dzn:A (1.724) BS01 peptide N/A GO:0004402 ... Q92794 39909374
    959171 9dzn:A (1.724) BS02 CMC N/A GO:0004402 ... Q92794 39909374
    959172 9dzn:A (1.724) BS03 ZN N/A GO:0004402 ... Q92794 39909374
    959173 9dzo:A (2.691) BS01 PLP N/A GO:0003870 ... P09950 N/A
    959174 9dzo:A (2.691) BS02 SCA N/A GO:0003870 ... P09950 N/A
    959175 9dzo:A (2.691) BS03 PLP N/A GO:0003870 ... P09950 N/A
    959176 9dzo:B (2.691) BS01 PLP N/A GO:0003870 ... P09950 N/A
    959177 9dzo:B (2.691) BS02 PLP N/A GO:0003870 ... P09950 N/A
    959178 9dzo:B (2.691) BS03 SCA N/A GO:0003870 ... P09950 N/A
    959179 9dzo:C (2.691) BS01 PLP N/A GO:0003870 ... P09950 N/A
    959180 9dzo:C (2.691) BS02 SCA N/A GO:0003870 ... P09950 N/A
    959181 9dzo:C (2.691) BS03 PLP N/A GO:0003870 ... P09950 N/A
    959182 9dzo:D (2.691) BS01 PLP N/A GO:0003870 ... P09950 N/A
    959183 9dzo:D (2.691) BS02 PLP N/A GO:0003870 ... P09950 N/A
    959184 9dzo:E (2.691) BS01 PLP N/A GO:0003870 ... P09950 N/A
    959185 9dzo:E (2.691) BS02 SCA N/A GO:0003870 ... P09950 N/A
    959186 9dzo:E (2.691) BS03 SCA N/A GO:0003870 ... P09950 N/A
    959187 9dzo:F (2.691) BS01 PLP N/A GO:0003870 ... P09950 N/A
    959188 9dzo:F (2.691) BS02 SCA N/A GO:0003870 ... P09950 N/A
    959189 9dzp:A (1.93) BS01 EL5 N/A GO:0006355 ... Q09E27 40506475
    959190 9dzp:B (1.93) BS01 EL5 N/A GO:0006355 ... Q09E27 40506475
    959191 9dzr:A (1.733) BS01 4MI N/A GO:0004497 ... Q2IU02 N/A
    959192 9dzr:A (1.733) BS02 HEM N/A GO:0004497 ... Q2IU02 N/A
    959193 9dzr:B (1.733) BS01 4MI N/A GO:0004497 ... Q2IU02 N/A
    959194 9dzr:B (1.733) BS02 HEM N/A GO:0004497 ... Q2IU02 N/A
    959195 9dzs:A (1.75) BS01 UDP N/A N/A Q5UNV6 40691173
    959196 9dzs:A (1.75) BS02 MN N/A N/A Q5UNV6 40691173
    959197 9dzu:A () BS01 MAN N/A N/A N/A N/A
    959198 9dzu:A () BS02 BEF N/A N/A N/A N/A
    959199 9dzu:A () BS03 MG N/A N/A N/A N/A
    959200 9dzu:A () BS04 A1BD6 N/A N/A N/A N/A

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).