SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    959201 9dzv:A (3.27) BS01 MAN N/A GO:0000166 ... J9VZ19 41478284
    959202 9dzv:A (3.27) BS02 MG N/A GO:0000166 ... J9VZ19 41478284
    959203 9dzx:A (1.66) BS01 peptide N/A N/A Q96WV5 N/A
    959204 9dzy:A (3.1) BS01 ATP N/A GO:0001673 ... Q14204 40750582
    959205 9dzy:A (3.1) BS02 ADP N/A GO:0001673 ... Q14204 40750582
    959206 9dzy:A (3.1) BS03 ADP N/A GO:0001673 ... Q14204 40750582
    959207 9dzy:A (3.1) BS04 MG N/A GO:0001673 ... Q14204 40750582
    959208 9dzy:A (3.1) BS05 MG N/A GO:0001673 ... Q14204 40750582
    959209 9dzy:A (3.1) BS06 ADP N/A GO:0001673 ... Q14204 40750582
    959210 9dzy:B (3.1) BS01 ADP N/A GO:0001673 ... Q14204 40750582
    959211 9dzy:B (3.1) BS02 ATP N/A GO:0001673 ... Q14204 40750582
    959212 9dzy:B (3.1) BS03 MG N/A GO:0001673 ... Q14204 40750582
    959213 9dzy:B (3.1) BS04 MG N/A GO:0001673 ... Q14204 40750582
    959214 9dzy:B (3.1) BS05 ADP N/A GO:0001673 ... Q14204 40750582
    959215 9dzy:B (3.1) BS06 ADP N/A GO:0001673 ... Q14204 40750582
    959216 9e00:A (3.75) BS01 dna N/A GO:0000786 ... Q71DI3 N/A
    959217 9e00:A (3.75) BS02 dna N/A GO:0000786 ... Q71DI3 N/A
    959218 9e00:B (3.75) BS01 dna N/A GO:0000781 ... P62805 N/A
    959219 9e00:B (3.75) BS02 dna N/A GO:0000781 ... P62805 N/A
    959220 9e00:C (3.75) BS01 dna N/A N/A N/A N/A
    959221 9e00:C (3.75) BS02 dna N/A N/A N/A N/A
    959222 9e00:D (3.75) BS01 dna N/A N/A N/A N/A
    959223 9e00:D (3.75) BS02 dna N/A N/A N/A N/A
    959224 9e00:E (3.75) BS01 dna N/A GO:0000786 ... Q71DI3 N/A
    959225 9e00:E (3.75) BS02 dna N/A GO:0000786 ... Q71DI3 N/A
    959226 9e00:F (3.75) BS01 dna N/A GO:0000781 ... P62805 N/A
    959227 9e00:F (3.75) BS02 dna N/A GO:0000781 ... P62805 N/A
    959228 9e00:G (3.75) BS01 dna N/A N/A N/A N/A
    959229 9e00:G (3.75) BS02 dna N/A N/A N/A N/A
    959230 9e00:H (3.75) BS01 dna N/A N/A N/A N/A
    959231 9e00:H (3.75) BS02 dna N/A N/A N/A N/A
    959232 9e00:K (3.75) BS01 SAH N/A N/A Q9Y6K1 N/A
    959233 9e00:L (3.75) BS01 ZN N/A N/A Q9UBC3 N/A
    959234 9e00:L (3.75) BS02 ZN N/A N/A Q9UBC3 N/A
    959235 9e00:L (3.75) BS03 ZN N/A N/A Q9UBC3 N/A
    959236 9e00:M (3.75) BS01 dna N/A GO:0000786 ... Q71DI3 N/A
    959237 9e00:M (3.75) BS02 dna N/A GO:0000786 ... Q71DI3 N/A
    959238 9e00:N (3.75) BS01 dna N/A GO:0000781 ... P62805 N/A
    959239 9e00:N (3.75) BS02 dna N/A GO:0000781 ... P62805 N/A
    959240 9e00:O (3.75) BS01 dna N/A N/A N/A N/A
    959241 9e00:O (3.75) BS02 dna N/A N/A N/A N/A
    959242 9e00:P (3.75) BS01 dna N/A N/A N/A N/A
    959243 9e00:Q (3.75) BS01 dna N/A GO:0000786 ... Q71DI3 N/A
    959244 9e00:Q (3.75) BS02 dna N/A GO:0000786 ... Q71DI3 N/A
    959245 9e00:R (3.75) BS01 dna N/A GO:0000781 ... P62805 N/A
    959246 9e00:R (3.75) BS02 dna N/A GO:0000781 ... P62805 N/A
    959247 9e00:S (3.75) BS01 dna N/A N/A N/A N/A
    959248 9e00:S (3.75) BS02 dna N/A N/A N/A N/A
    959249 9e00:T (3.75) BS01 dna N/A N/A N/A N/A
    959250 9e00:U (3.75) BS01 dna N/A N/A Q9Y6K1 N/A
    959251 9e00:U (3.75) BS02 dna N/A N/A Q9Y6K1 N/A
    959252 9e00:U (3.75) BS03 SAH N/A N/A Q9Y6K1 N/A
    959253 9e00:V (3.75) BS01 ZN N/A N/A Q9UBC3 N/A
    959254 9e00:V (3.75) BS02 ZN N/A N/A Q9UBC3 N/A
    959255 9e00:V (3.75) BS03 ZN N/A N/A Q9UBC3 N/A
    959256 9e00:W (3.75) BS01 dna N/A N/A Q9Y6K1 N/A
    959257 9e00:W (3.75) BS02 SAH N/A N/A Q9Y6K1 N/A
    959258 9e00:Y (3.75) BS01 ZN N/A N/A Q9Y6K1 N/A
    959259 9e00:Y (3.75) BS02 ZN N/A N/A Q9Y6K1 N/A
    959260 9e00:Y (3.75) BS03 SAH N/A N/A Q9Y6K1 N/A
    959261 9e01:A (2.4) BS01 peptide N/A GO:0005515 ... P69423 N/A
    959262 9e01:B (2.4) BS01 peptide N/A GO:0005515 ... P69425 N/A
    959263 9e01:C (2.4) BS01 peptide N/A GO:0005515 ... P69423 N/A
    959264 9e01:D (2.4) BS01 peptide N/A GO:0005515 ... P69425 N/A
    959265 9e01:E (2.4) BS01 peptide N/A GO:0005515 ... P69423 N/A
    959266 9e01:F (2.4) BS01 peptide N/A GO:0005515 ... P69425 N/A
    959267 9e03:A (3.2) BS01 peptide N/A GO:0005886 ... Q2PHA2 N/A
    959268 9e03:A (3.2) BS02 peptide N/A GO:0005886 ... Q2PHA2 N/A
    959269 9e03:C (3.2) BS01 peptide N/A GO:0005886 ... Q2PHA2 N/A
    959270 9e03:C (3.2) BS02 peptide N/A GO:0005886 ... Q2PHA2 N/A
    959271 9e03:E (3.2) BS01 peptide N/A GO:0005886 ... Q2PHA2 N/A
    959272 9e03:E (3.2) BS02 peptide N/A GO:0005886 ... Q2PHA2 N/A
    959273 9e04:A (3.2) BS01 peptide N/A GO:0005886 ... E6X1G9 N/A
    959274 9e04:B (3.2) BS01 peptide N/A GO:0005886 ... E6X1H0 N/A
    959275 9e04:C (3.2) BS01 peptide N/A GO:0005886 ... E6X1G9 N/A
    959276 9e04:D (3.2) BS01 peptide N/A GO:0005886 ... E6X1H0 N/A
    959277 9e04:E (3.2) BS01 peptide N/A GO:0005886 ... E6X1G9 N/A
    959278 9e04:F (3.2) BS01 peptide N/A GO:0005886 ... E6X1H0 N/A
    959279 9e05:A (8.0) BS01 dna N/A GO:0000786 ... Q71DI3 N/A
    959280 9e05:A (8.0) BS02 dna N/A GO:0000786 ... Q71DI3 N/A
    959281 9e05:B (8.0) BS01 dna N/A GO:0000781 ... P62805 N/A
    959282 9e05:B (8.0) BS02 dna N/A GO:0000781 ... P62805 N/A
    959283 9e05:C (8.0) BS01 dna N/A N/A P0C0S8 N/A
    959284 9e05:C (8.0) BS02 dna N/A N/A P0C0S8 N/A
    959285 9e05:D (8.0) BS01 dna N/A N/A P06899 N/A
    959286 9e05:D (8.0) BS02 dna N/A N/A P06899 N/A
    959287 9e05:E (8.0) BS01 dna N/A GO:0000786 ... Q71DI3 N/A
    959288 9e05:E (8.0) BS02 dna N/A GO:0000786 ... Q71DI3 N/A
    959289 9e05:F (8.0) BS01 dna N/A GO:0000781 ... P62805 N/A
    959290 9e05:F (8.0) BS02 dna N/A GO:0000781 ... P62805 N/A
    959291 9e05:G (8.0) BS01 dna N/A N/A P0C0S8 N/A
    959292 9e05:G (8.0) BS02 dna N/A N/A P0C0S8 N/A
    959293 9e05:H (8.0) BS01 dna N/A N/A P06899 N/A
    959294 9e05:H (8.0) BS02 dna N/A N/A P06899 N/A
    959295 9e05:K (8.0) BS01 ZN N/A N/A Q9Y6K1 N/A
    959296 9e05:K (8.0) BS02 ZN N/A N/A Q9Y6K1 N/A
    959297 9e05:K (8.0) BS03 ZN N/A N/A Q9Y6K1 N/A
    959298 9e05:K (8.0) BS04 SAH N/A N/A Q9Y6K1 N/A
    959299 9e05:L (8.0) BS01 ZN N/A N/A Q9UBC3 N/A
    959300 9e05:L (8.0) BS02 ZN N/A N/A Q9UBC3 N/A
    959301 9e05:L (8.0) BS03 ZN N/A N/A Q9UBC3 N/A
    959302 9e05:M (8.0) BS01 dna N/A GO:0000786 ... Q71DI3 N/A
    959303 9e05:M (8.0) BS02 dna N/A GO:0000786 ... Q71DI3 N/A
    959304 9e05:N (8.0) BS01 dna N/A GO:0000781 ... P62805 N/A
    959305 9e05:N (8.0) BS02 dna N/A GO:0000781 ... P62805 N/A
    959306 9e05:O (8.0) BS01 dna N/A N/A P0C0S8 N/A
    959307 9e05:O (8.0) BS02 dna N/A N/A P0C0S8 N/A
    959308 9e05:P (8.0) BS01 dna N/A N/A P06899 N/A
    959309 9e05:Q (8.0) BS01 dna N/A GO:0000786 ... Q71DI3 N/A
    959310 9e05:Q (8.0) BS02 dna N/A GO:0000786 ... Q71DI3 N/A
    959311 9e05:R (8.0) BS01 dna N/A GO:0000781 ... P62805 N/A
    959312 9e05:R (8.0) BS02 dna N/A GO:0000781 ... P62805 N/A
    959313 9e05:S (8.0) BS01 dna N/A N/A P0C0S8 N/A
    959314 9e05:S (8.0) BS02 dna N/A N/A P0C0S8 N/A
    959315 9e05:T (8.0) BS01 dna N/A N/A P06899 N/A
    959316 9e05:U (8.0) BS01 dna N/A N/A Q9Y6K1 N/A
    959317 9e05:U (8.0) BS02 dna N/A N/A Q9Y6K1 N/A
    959318 9e05:U (8.0) BS03 ZN N/A N/A Q9Y6K1 N/A
    959319 9e05:U (8.0) BS04 ZN N/A N/A Q9Y6K1 N/A
    959320 9e05:U (8.0) BS05 ZN N/A N/A Q9Y6K1 N/A
    959321 9e05:U (8.0) BS06 SAH N/A N/A Q9Y6K1 N/A
    959322 9e05:V (8.0) BS01 ZN N/A N/A Q9UBC3 N/A
    959323 9e05:V (8.0) BS02 ZN N/A N/A Q9UBC3 N/A
    959324 9e05:V (8.0) BS03 ZN N/A N/A Q9UBC3 N/A
    959325 9e05:W (8.0) BS01 dna N/A N/A Q9Y6K1 N/A
    959326 9e05:W (8.0) BS02 ZN N/A N/A Q9Y6K1 N/A
    959327 9e05:W (8.0) BS03 ZN N/A N/A Q9Y6K1 N/A
    959328 9e05:W (8.0) BS04 ZN N/A N/A Q9Y6K1 N/A
    959329 9e05:W (8.0) BS05 SAH N/A N/A Q9Y6K1 N/A
    959330 9e05:Y (8.0) BS01 ZN N/A N/A Q9Y6K1 N/A
    959331 9e05:Y (8.0) BS02 ZN N/A N/A Q9Y6K1 N/A
    959332 9e05:Y (8.0) BS03 SAH N/A N/A Q9Y6K1 N/A
    959333 9e07:A (3.4) BS01 peptide N/A GO:0005886 ... E6X1G9 N/A
    959334 9e07:C (3.4) BS01 peptide N/A GO:0005886 ... E6X1G9 N/A
    959335 9e07:E (3.4) BS01 peptide N/A GO:0005886 ... E6X1G9 N/A
    959336 9e09:M (3.72) BS01 dna N/A GO:0000786 ... Q71DI3 N/A
    959337 9e09:M (3.72) BS02 dna N/A GO:0000786 ... Q71DI3 N/A
    959338 9e09:N (3.72) BS01 dna N/A GO:0000781 ... P62805 N/A
    959339 9e09:N (3.72) BS02 dna N/A GO:0000781 ... P62805 N/A
    959340 9e09:O (3.72) BS01 dna N/A N/A P0C0S8 N/A
    959341 9e09:O (3.72) BS02 dna N/A N/A P0C0S8 N/A
    959342 9e09:O (3.72) BS03 peptide N/A N/A P0C0S8 N/A
    959343 9e09:P (3.72) BS01 dna N/A N/A P06899 N/A
    959344 9e09:P (3.72) BS02 peptide N/A N/A P06899 N/A
    959345 9e09:Q (3.72) BS01 dna N/A GO:0000786 ... Q71DI3 N/A
    959346 9e09:Q (3.72) BS02 dna N/A GO:0000786 ... Q71DI3 N/A
    959347 9e09:R (3.72) BS01 dna N/A GO:0000781 ... P62805 N/A
    959348 9e09:R (3.72) BS02 dna N/A GO:0000781 ... P62805 N/A
    959349 9e09:S (3.72) BS01 dna N/A N/A P0C0S8 N/A
    959350 9e09:S (3.72) BS02 dna N/A N/A P0C0S8 N/A
    959351 9e09:S (3.72) BS03 peptide N/A N/A P0C0S8 N/A
    959352 9e09:T (3.72) BS01 dna N/A N/A P06899 N/A
    959353 9e09:T (3.72) BS02 peptide N/A N/A P06899 N/A
    959354 9e0a:A (1.39) BS01 FAD N/A GO:0003700 ... F7X6I3 39598797
    959355 9e0a:A (1.39) BS02 NAD N/A GO:0003700 ... F7X6I3 39598797
    959356 9e0a:B (1.39) BS01 FAD N/A GO:0003700 ... F7X6I3 39598797
    959357 9e0a:B (1.39) BS02 A1BDW N/A GO:0003700 ... F7X6I3 39598797
    959358 9e0a:B (1.39) BS03 NAD N/A GO:0003700 ... F7X6I3 39598797
    959359 9e0b:A (1.47) BS01 FAD N/A GO:0003700 ... F7X6I3 39598797
    959360 9e0b:A (1.47) BS02 A1AQC N/A GO:0003700 ... F7X6I3 39598797
    959361 9e0b:A (1.47) BS03 NAD N/A GO:0003700 ... F7X6I3 39598797
    959362 9e0b:B (1.47) BS01 FAD N/A GO:0003700 ... F7X6I3 39598797
    959363 9e0b:B (1.47) BS02 A1AQC N/A GO:0003700 ... F7X6I3 39598797
    959364 9e0b:B (1.47) BS03 NAD N/A GO:0003700 ... F7X6I3 39598797
    959365 9e0c:A (1.32) BS01 FAD N/A GO:0003700 ... F7X6I3 39598797
    959366 9e0c:A (1.32) BS02 A1BDX N/A GO:0003700 ... F7X6I3 39598797
    959367 9e0c:A (1.32) BS03 NAD N/A GO:0003700 ... F7X6I3 39598797
    959368 9e0c:B (1.32) BS01 FAD N/A GO:0003700 ... F7X6I3 39598797
    959369 9e0c:B (1.32) BS02 A1BDX N/A GO:0003700 ... F7X6I3 39598797
    959370 9e0c:B (1.32) BS03 NAD N/A GO:0003700 ... F7X6I3 39598797
    959371 9e0d:A (1.33) BS01 FAD N/A GO:0003700 ... F7X6I3 39598797
    959372 9e0d:A (1.33) BS02 A1BDV N/A GO:0003700 ... F7X6I3 39598797
    959373 9e0d:A (1.33) BS03 NAD N/A GO:0003700 ... F7X6I3 39598797
    959374 9e0d:B (1.33) BS01 FAD N/A GO:0003700 ... F7X6I3 39598797
    959375 9e0d:B (1.33) BS02 A1BDV N/A GO:0003700 ... F7X6I3 39598797
    959376 9e0d:B (1.33) BS03 NAD N/A GO:0003700 ... F7X6I3 39598797
    959377 9e0e:A (1.37) BS01 FAD N/A GO:0003700 ... F7X6I3 39598797
    959378 9e0e:A (1.37) BS02 A1BDU N/A GO:0003700 ... F7X6I3 39598797
    959379 9e0e:A (1.37) BS03 NAD N/A GO:0003700 ... F7X6I3 39598797
    959380 9e0e:B (1.37) BS01 FAD N/A GO:0003700 ... F7X6I3 39598797
    959381 9e0e:B (1.37) BS02 A1BDU N/A GO:0003700 ... F7X6I3 39598797
    959382 9e0e:B (1.37) BS03 NAD N/A GO:0003700 ... F7X6I3 39598797
    959383 9e0f:U (3.46) BS01 ZN N/A N/A Q9Y6K1 N/A
    959384 9e0f:U (3.46) BS02 ZN N/A N/A Q9Y6K1 N/A
    959385 9e0f:U (3.46) BS03 ZN N/A N/A Q9Y6K1 N/A
    959386 9e0f:U (3.46) BS04 SAH N/A N/A Q9Y6K1 N/A
    959387 9e0f:V (3.46) BS01 ZN N/A N/A Q9UBC3 N/A
    959388 9e0f:V (3.46) BS02 ZN N/A N/A Q9UBC3 N/A
    959389 9e0f:V (3.46) BS03 ZN N/A N/A Q9UBC3 N/A
    959390 9e0f:Y (3.46) BS01 ZN N/A N/A Q9Y6K1 N/A
    959391 9e0f:Y (3.46) BS02 ZN N/A N/A Q9Y6K1 N/A
    959392 9e0f:Y (3.46) BS03 SAH N/A N/A Q9Y6K1 N/A
    959393 9e0g:K (3.72) BS01 ZN N/A N/A Q9Y6K1 N/A
    959394 9e0g:K (3.72) BS02 ZN N/A N/A Q9Y6K1 N/A
    959395 9e0g:K (3.72) BS03 ZN N/A N/A Q9Y6K1 N/A
    959396 9e0g:K (3.72) BS04 SAH N/A N/A Q9Y6K1 N/A
    959397 9e0g:L (3.72) BS01 ZN N/A N/A Q9UBC3 N/A
    959398 9e0g:L (3.72) BS02 ZN N/A N/A Q9UBC3 N/A
    959399 9e0g:L (3.72) BS03 ZN N/A N/A Q9UBC3 N/A
    959400 9e0g:W (3.72) BS01 ZN N/A N/A Q9Y6K1 N/A

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).