SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    959801 9e0n:4 (3.24) BS01 rna N/A GO:0003735 ... A0QS39 40626557
    959802 9e0n:5 (3.24) BS01 rna N/A GO:0003735 ... A0R7K0 40626557
    959803 9e0n:6 (3.24) BS01 rna N/A GO:0003735 ... A0QYU7 40626557
    959804 9e0n:7 (3.24) BS01 rna N/A GO:0003735 ... A0QSL4 40626557
    959805 9e0n:C (3.24) BS01 rna N/A GO:0002181 ... A0QSD4 40626557
    959806 9e0n:C (3.24) BS02 rna N/A GO:0002181 ... A0QSD4 40626557
    959807 9e0n:D (3.24) BS01 rna N/A GO:0003735 ... A0QSD1 40626557
    959808 9e0n:E (3.24) BS01 rna N/A GO:0003735 ... A0QSD2 40626557
    959809 9e0n:F (3.24) BS01 rna N/A GO:0000049 ... A0QSG1 40626557
    959810 9e0n:F (3.24) BS02 rna N/A GO:0000049 ... A0QSG1 40626557
    959811 9e0n:G (3.24) BS01 rna N/A GO:0002181 ... A0QSG4 40626557
    959812 9e0n:H (3.24) BS01 rna N/A GO:0003735 ... A0R7F6 40626557
    959813 9e0n:I (3.24) BS01 rna N/A GO:0003735 ... A0QS62 40626557
    959814 9e0n:J (3.24) BS01 rna N/A GO:0003735 ... A0QS45 40626557
    959815 9e0n:K (3.24) BS01 rna N/A GO:0003729 ... A0QSP8 40626557
    959816 9e0n:L (3.24) BS01 rna N/A GO:0003735 ... A0QSF9 40626557
    959817 9e0n:L (3.24) BS02 rna N/A GO:0003735 ... A0QSF9 40626557
    959818 9e0n:M (3.24) BS01 rna N/A GO:0003735 ... A0QSG8 40626557
    959819 9e0n:N (3.24) BS01 rna N/A GO:0003735 ... A0QSD8 40626557
    959820 9e0n:O (3.24) BS01 rna N/A GO:0003735 ... A0QSL9 40626557
    959821 9e0n:P (3.24) BS01 rna N/A GO:0003735 ... A0QSG5 40626557
    959822 9e0n:P (3.24) BS02 rna N/A GO:0003735 ... A0QSG5 40626557
    959823 9e0n:Q (3.24) BS01 rna N/A GO:0003735 ... A0QV42 40626557
    959824 9e0n:Q (3.24) BS02 rna N/A GO:0003735 ... A0QV42 40626557
    959825 9e0n:R (3.24) BS01 rna N/A GO:0000027 ... A0QYU6 40626557
    959826 9e0n:S (3.24) BS01 rna N/A GO:0003723 ... A0R151 40626557
    959827 9e0n:T (3.24) BS01 rna N/A GO:0003735 ... A0QSD6 40626557
    959828 9e0n:U (3.24) BS01 rna N/A GO:0003735 ... A0QSD3 40626557
    959829 9e0n:V (3.24) BS01 rna N/A GO:0003723 ... A0QSG0 40626557
    959830 9e0n:W (3.24) BS01 rna N/A GO:0003723 ... A0R3D2 40626557
    959831 9e0n:W (3.24) BS02 rna N/A GO:0003723 ... A0R3D2 40626557
    959832 9e0n:X (3.24) BS01 rna N/A GO:0003735 ... A0R150 40626557
    959833 9e0n:Y (3.24) BS01 rna N/A GO:0003735 ... A0QV03 40626557
    959834 9e0n:Z (3.24) BS01 rna N/A GO:0003735 ... A0QSD9 40626557
    959835 9e0n:b (3.24) BS01 rna N/A GO:0003735 ... A0QVB8 40626557
    959836 9e0n:c (3.24) BS01 rna N/A GO:0003676 ... A0QSD7 40626557
    959837 9e0n:d (3.24) BS01 rna N/A GO:0003723 ... A0QSL7 40626557
    959838 9e0n:e (3.24) BS01 rna N/A GO:0003723 ... A0QSG6 40626557
    959839 9e0n:f (3.24) BS01 rna N/A GO:0003735 ... A0R7F9 40626557
    959840 9e0n:g (3.24) BS01 rna N/A GO:0000049 ... A0QS97 40626557
    959841 9e0n:h (3.24) BS01 rna N/A GO:0003735 ... A0QSG3 40626557
    959842 9e0n:i (3.24) BS01 rna N/A GO:0003723 ... A0QSP9 40626557
    959843 9e0n:j (3.24) BS01 rna N/A GO:0000049 ... A0QSD0 40626557
    959844 9e0n:k (3.24) BS01 rna N/A GO:0003735 ... A0QSL6 40626557
    959845 9e0n:l (3.24) BS01 rna N/A GO:0000049 ... A0QS96 40626557
    959846 9e0n:m (3.24) BS01 rna N/A GO:0000049 ... A0QSL5 40626557
    959847 9e0n:n (3.24) BS01 rna N/A GO:0003735 ... A0QSG2 40626557
    959848 9e0n:o (3.24) BS01 rna N/A GO:0003735 ... A0QVQ3 40626557
    959849 9e0n:o (3.24) BS02 rna N/A GO:0003735 ... A0QVQ3 40626557
    959850 9e0n:p (3.24) BS01 rna N/A GO:0003735 ... A0QV37 40626557
    959851 9e0n:q (3.24) BS01 rna N/A GO:0003735 ... A0QSE0 40626557
    959852 9e0n:r (3.24) BS01 rna N/A GO:0003735 ... A0R7F7 40626557
    959853 9e0n:s (3.24) BS01 rna N/A GO:0000028 ... A0QSD5 40626557
    959854 9e0n:s (3.24) BS02 rna N/A GO:0000028 ... A0QSD5 40626557
    959855 9e0n:t (3.24) BS01 rna N/A GO:0003723 ... A0R102 40626557
    959856 9e0n:u (3.24) BS01 rna N/A N/A A0QR10 40626557
    959857 9e0n:u (3.24) BS02 rna N/A N/A A0QR10 40626557
    959858 9e0o:A (2.0) BS01 A1BD1 N/A GO:0003824 ... G9Y9L1 40401103
    959859 9e0o:A (2.0) BS02 A1BD1 N/A GO:0003824 ... G9Y9L1 40401103
    959860 9e0o:B (2.0) BS01 A1BD1 N/A GO:0003824 ... G9Y9L1 40401103
    959861 9e0o:B (2.0) BS02 A1BD1 N/A GO:0003824 ... G9Y9L1 40401103
    959862 9e0o:C (2.0) BS01 A1BD1 N/A GO:0003824 ... G9Y9L1 40401103
    959863 9e0o:C (2.0) BS02 A1BD1 N/A GO:0003824 ... G9Y9L1 40401103
    959864 9e0o:D (2.0) BS01 A1BD1 N/A GO:0003824 ... G9Y9L1 40401103
    959865 9e0o:D (2.0) BS02 A1BD1 N/A GO:0003824 ... G9Y9L1 40401103
    959866 9e0o:E (2.0) BS01 A1BD1 N/A GO:0003824 ... G9Y9L1 40401103
    959867 9e0o:E (2.0) BS02 A1BD1 N/A GO:0003824 ... G9Y9L1 40401103
    959868 9e0o:F (2.0) BS01 A1BD1 N/A GO:0003824 ... G9Y9L1 40401103
    959869 9e0o:F (2.0) BS02 A1BD1 N/A GO:0003824 ... G9Y9L1 40401103
    959870 9e0o:G (2.0) BS01 A1BD1 N/A GO:0003824 ... G9Y9L1 40401103
    959871 9e0o:G (2.0) BS02 A1BD1 N/A GO:0003824 ... G9Y9L1 40401103
    959872 9e0o:H (2.0) BS01 A1BD1 N/A GO:0003824 ... G9Y9L1 40401103
    959873 9e0o:H (2.0) BS02 A1BD1 N/A GO:0003824 ... G9Y9L1 40401103
    959874 9e0o:I (2.0) BS01 A1BD1 N/A GO:0003824 ... G9Y9L1 40401103
    959875 9e0o:I (2.0) BS02 A1BD1 N/A GO:0003824 ... G9Y9L1 40401103
    959876 9e0o:J (2.0) BS01 A1BD1 N/A GO:0003824 ... G9Y9L1 40401103
    959877 9e0o:J (2.0) BS02 A1BD1 N/A GO:0003824 ... G9Y9L1 40401103
    959878 9e0p:1 (3.17) BS01 rna N/A GO:0003735 ... A0QSG7 40626557
    959879 9e0p:1 (3.17) BS02 rna N/A GO:0003735 ... A0QSG7 40626557
    959880 9e0p:2 (3.17) BS01 rna N/A GO:0003735 ... A0R215 40626557
    959881 9e0p:2 (3.17) BS02 MG N/A GO:0003735 ... A0R215 40626557
    959882 9e0p:3 (3.17) BS01 rna N/A GO:0003735 ... A0R3I9 40626557
    959883 9e0p:4 (3.17) BS01 rna N/A GO:0003735 ... A0QS39 40626557
    959884 9e0p:5 (3.17) BS01 rna N/A GO:0003735 ... A0R7K0 40626557
    959885 9e0p:6 (3.17) BS01 rna N/A GO:0003735 ... A0QYU7 40626557
    959886 9e0p:7 (3.17) BS01 rna N/A GO:0003735 ... A0QSL4 40626557
    959887 9e0p:C (3.17) BS01 rna N/A GO:0002181 ... A0QSD4 40626557
    959888 9e0p:C (3.17) BS02 MG N/A GO:0002181 ... A0QSD4 40626557
    959889 9e0p:D (3.17) BS01 rna N/A GO:0003735 ... A0QSD1 40626557
    959890 9e0p:E (3.17) BS01 rna N/A GO:0003735 ... A0QSD2 40626557
    959891 9e0p:F (3.17) BS01 rna N/A GO:0000049 ... A0QSG1 40626557
    959892 9e0p:F (3.17) BS02 rna N/A GO:0000049 ... A0QSG1 40626557
    959893 9e0p:G (3.17) BS01 rna N/A GO:0002181 ... A0QSG4 40626557
    959894 9e0p:H (3.17) BS01 rna N/A GO:0003735 ... A0R7F6 40626557
    959895 9e0p:I (3.17) BS01 rna N/A GO:0003735 ... A0QS62 40626557
    959896 9e0p:J (3.17) BS01 rna N/A GO:0003735 ... A0QS45 40626557
    959897 9e0p:K (3.17) BS01 rna N/A GO:0003729 ... A0QSP8 40626557
    959898 9e0p:L (3.17) BS01 rna N/A GO:0003735 ... A0QSF9 40626557
    959899 9e0p:L (3.17) BS02 rna N/A GO:0003735 ... A0QSF9 40626557
    959900 9e0p:M (3.17) BS01 rna N/A GO:0003735 ... A0QSG8 40626557
    959901 9e0p:N (3.17) BS01 rna N/A GO:0003735 ... A0QSD8 40626557
    959902 9e0p:O (3.17) BS01 rna N/A GO:0003735 ... A0QSL9 40626557
    959903 9e0p:P (3.17) BS01 rna N/A GO:0003735 ... A0QSG5 40626557
    959904 9e0p:P (3.17) BS02 rna N/A GO:0003735 ... A0QSG5 40626557
    959905 9e0p:Q (3.17) BS01 rna N/A GO:0003735 ... A0QV42 40626557
    959906 9e0p:Q (3.17) BS02 rna N/A GO:0003735 ... A0QV42 40626557
    959907 9e0p:R (3.17) BS01 rna N/A GO:0000027 ... A0QYU6 40626557
    959908 9e0p:S (3.17) BS01 rna N/A GO:0003723 ... A0R151 40626557
    959909 9e0p:T (3.17) BS01 rna N/A GO:0003735 ... A0QSD6 40626557
    959910 9e0p:U (3.17) BS01 rna N/A GO:0003735 ... A0QSD3 40626557
    959911 9e0p:V (3.17) BS01 rna N/A GO:0003723 ... A0QSG0 40626557
    959912 9e0p:W (3.17) BS01 rna N/A GO:0003723 ... A0R3D2 40626557
    959913 9e0p:W (3.17) BS02 rna N/A GO:0003723 ... A0R3D2 40626557
    959914 9e0p:X (3.17) BS01 rna N/A GO:0003735 ... A0R150 40626557
    959915 9e0p:Y (3.17) BS01 rna N/A GO:0003735 ... A0QV03 40626557
    959916 9e0p:Z (3.17) BS01 rna N/A GO:0003735 ... A0QSD9 40626557
    959917 9e0p:b (3.17) BS01 rna N/A GO:0003735 ... A0QVB8 40626557
    959918 9e0p:c (3.17) BS01 rna N/A GO:0003676 ... A0QSD7 40626557
    959919 9e0p:d (3.17) BS01 rna N/A GO:0003723 ... A0QSL7 40626557
    959920 9e0p:e (3.17) BS01 rna N/A GO:0003723 ... A0QSG6 40626557
    959921 9e0p:f (3.17) BS01 rna N/A GO:0003735 ... A0R7F9 40626557
    959922 9e0p:g (3.17) BS01 rna N/A GO:0000049 ... A0QS97 40626557
    959923 9e0p:h (3.17) BS01 rna N/A GO:0003735 ... A0QSG3 40626557
    959924 9e0p:i (3.17) BS01 rna N/A GO:0003723 ... A0QSP9 40626557
    959925 9e0p:j (3.17) BS01 rna N/A GO:0000049 ... A0QSD0 40626557
    959926 9e0p:k (3.17) BS01 rna N/A GO:0003735 ... A0QSL6 40626557
    959927 9e0p:l (3.17) BS01 rna N/A GO:0000049 ... A0QS96 40626557
    959928 9e0p:m (3.17) BS01 rna N/A GO:0000049 ... A0QSL5 40626557
    959929 9e0p:n (3.17) BS01 rna N/A GO:0003735 ... A0QSG2 40626557
    959930 9e0p:o (3.17) BS01 rna N/A GO:0003735 ... A0QVQ3 40626557
    959931 9e0p:o (3.17) BS02 rna N/A GO:0003735 ... A0QVQ3 40626557
    959932 9e0p:p (3.17) BS01 rna N/A GO:0003735 ... A0QV37 40626557
    959933 9e0p:q (3.17) BS01 rna N/A GO:0003735 ... A0QSE0 40626557
    959934 9e0p:r (3.17) BS01 rna N/A GO:0003735 ... A0R7F7 40626557
    959935 9e0p:s (3.17) BS01 rna N/A GO:0000028 ... A0QSD5 40626557
    959936 9e0p:t (3.17) BS01 rna N/A GO:0003723 ... A0R102 40626557
    959937 9e0p:u (3.17) BS01 rna N/A N/A A0QR10 40626557
    959938 9e0p:u (3.17) BS02 rna N/A N/A A0QR10 40626557
    959939 9e0q:A (2.3) BS01 A1BD0 N/A GO:0003824 ... G9Y9L1 40401103
    959940 9e0q:A (2.3) BS02 A1BD0 N/A GO:0003824 ... G9Y9L1 40401103
    959941 9e0q:B (2.3) BS01 A1BD0 N/A GO:0003824 ... G9Y9L1 40401103
    959942 9e0q:B (2.3) BS02 A1BD0 N/A GO:0003824 ... G9Y9L1 40401103
    959943 9e0q:C (2.3) BS01 A1BD0 N/A GO:0003824 ... G9Y9L1 40401103
    959944 9e0q:C (2.3) BS02 A1BD0 N/A GO:0003824 ... G9Y9L1 40401103
    959945 9e0q:D (2.3) BS01 A1BD0 N/A GO:0003824 ... G9Y9L1 40401103
    959946 9e0q:D (2.3) BS02 A1BD0 N/A GO:0003824 ... G9Y9L1 40401103
    959947 9e0q:E (2.3) BS01 A1BD0 N/A GO:0003824 ... G9Y9L1 40401103
    959948 9e0q:E (2.3) BS02 A1BD0 N/A GO:0003824 ... G9Y9L1 40401103
    959949 9e0q:F (2.3) BS01 A1BD0 N/A GO:0003824 ... G9Y9L1 40401103
    959950 9e0q:F (2.3) BS02 A1BD0 N/A GO:0003824 ... G9Y9L1 40401103
    959951 9e0q:G (2.3) BS01 A1BD0 N/A GO:0003824 ... G9Y9L1 40401103
    959952 9e0q:G (2.3) BS02 A1BD0 N/A GO:0003824 ... G9Y9L1 40401103
    959953 9e0q:H (2.3) BS01 A1BD0 N/A GO:0003824 ... G9Y9L1 40401103
    959954 9e0q:H (2.3) BS02 A1BD0 N/A GO:0003824 ... G9Y9L1 40401103
    959955 9e0q:I (2.3) BS01 A1BD0 N/A GO:0003824 ... G9Y9L1 40401103
    959956 9e0q:I (2.3) BS02 A1BD0 N/A GO:0003824 ... G9Y9L1 40401103
    959957 9e0q:J (2.3) BS01 A1BD0 N/A GO:0003824 ... G9Y9L1 40401103
    959958 9e0q:J (2.3) BS02 A1BD0 N/A GO:0003824 ... G9Y9L1 40401103
    959959 9e0r:A (3.2) BS01 dna N/A GO:0000786 ... Q71DI3 N/A
    959960 9e0r:A (3.2) BS02 dna N/A GO:0000786 ... Q71DI3 N/A
    959961 9e0r:B (3.2) BS01 dna N/A GO:0000781 ... P62805 N/A
    959962 9e0r:B (3.2) BS02 dna N/A GO:0000781 ... P62805 N/A
    959963 9e0r:C (3.2) BS01 dna N/A N/A P0C0S8 N/A
    959964 9e0r:C (3.2) BS02 dna N/A N/A P0C0S8 N/A
    959965 9e0r:C (3.2) BS03 peptide N/A N/A P0C0S8 N/A
    959966 9e0r:D (3.2) BS01 dna N/A N/A P06899 N/A
    959967 9e0r:D (3.2) BS02 dna N/A N/A P06899 N/A
    959968 9e0r:E (3.2) BS01 dna N/A GO:0000786 ... Q71DI3 N/A
    959969 9e0r:E (3.2) BS02 dna N/A GO:0000786 ... Q71DI3 N/A
    959970 9e0r:F (3.2) BS01 dna N/A GO:0000781 ... P62805 N/A
    959971 9e0r:F (3.2) BS02 dna N/A GO:0000781 ... P62805 N/A
    959972 9e0r:G (3.2) BS01 dna N/A N/A P0C0S8 N/A
    959973 9e0r:G (3.2) BS02 dna N/A N/A P0C0S8 N/A
    959974 9e0r:G (3.2) BS03 peptide N/A N/A P0C0S8 N/A
    959975 9e0r:H (3.2) BS01 dna N/A N/A P06899 N/A
    959976 9e0r:H (3.2) BS02 peptide N/A N/A P06899 N/A
    959977 9e0t:A (3.1) BS01 ADP N/A GO:0001673 ... Q14204 40750582
    959978 9e0t:A (3.1) BS02 ATP N/A GO:0001673 ... Q14204 40750582
    959979 9e0t:A (3.1) BS03 MG N/A GO:0001673 ... Q14204 40750582
    959980 9e0t:A (3.1) BS04 ADP N/A GO:0001673 ... Q14204 40750582
    959981 9e0t:A (3.1) BS05 ADP N/A GO:0001673 ... Q14204 40750582
    959982 9e0u:A (3.4) BS01 ADP N/A GO:0001673 ... Q14204 40750582
    959983 9e0u:A (3.4) BS02 ATP N/A GO:0001673 ... Q14204 40750582
    959984 9e0u:A (3.4) BS03 MG N/A GO:0001673 ... Q14204 40750582
    959985 9e0u:A (3.4) BS04 ADP N/A GO:0001673 ... Q14204 40750582
    959986 9e0u:A (3.4) BS05 ADP N/A GO:0001673 ... Q14204 40750582
    959987 9e0u:A (3.4) BS06 MG N/A GO:0001673 ... Q14204 40750582
    959988 9e0v:A (1.635) BS01 peptide N/A GO:0008643 ... P57764 N/A
    959989 9e0w:A (3.2) BS01 ADP N/A GO:0001673 ... Q14204 40750582
    959990 9e0w:A (3.2) BS02 ATP N/A GO:0001673 ... Q14204 40750582
    959991 9e0w:A (3.2) BS03 MG N/A GO:0001673 ... Q14204 40750582
    959992 9e0w:A (3.2) BS04 ADP N/A GO:0001673 ... Q14204 40750582
    959993 9e0w:A (3.2) BS05 ADP N/A GO:0001673 ... Q14204 40750582
    959994 9e0w:A (3.2) BS06 MG N/A GO:0001673 ... Q14204 40750582
    959995 9e0x:A (2.7) BS01 ADP N/A GO:0001673 ... Q14204 40750582
    959996 9e0x:A (2.7) BS02 ATP N/A GO:0001673 ... Q14204 40750582
    959997 9e0x:A (2.7) BS03 ADP N/A GO:0001673 ... Q14204 40750582
    959998 9e0x:A (2.7) BS04 ADP N/A GO:0001673 ... Q14204 40750582
    959999 9e0x:A (2.7) BS05 MG N/A GO:0001673 ... Q14204 40750582
    960000 9e0x:B (2.7) BS01 ADP N/A GO:0001673 ... Q14204 40750582

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).