SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    960601 9e2b:E (1.8) BS01 TRP N/A GO:0015276 ... A0ACD6B9Y2 N/A
    960602 9e2b:F (1.8) BS01 TRP N/A GO:0015276 ... A0ACD6B9Y2 N/A
    960603 9e2d:A (6.08) BS01 dna N/A GO:0000786 ... Q71DI3 N/A
    960604 9e2d:A (6.08) BS02 dna N/A GO:0000786 ... Q71DI3 N/A
    960605 9e2d:B (6.08) BS01 dna N/A GO:0000781 ... P62805 N/A
    960606 9e2d:B (6.08) BS02 dna N/A GO:0000781 ... P62805 N/A
    960607 9e2d:C (6.08) BS01 dna N/A N/A P0C0S8 N/A
    960608 9e2d:C (6.08) BS02 dna N/A N/A P0C0S8 N/A
    960609 9e2d:D (6.08) BS01 dna N/A N/A P06899 N/A
    960610 9e2d:D (6.08) BS02 dna N/A N/A P06899 N/A
    960611 9e2d:E (6.08) BS01 dna N/A GO:0000786 ... Q71DI3 N/A
    960612 9e2d:E (6.08) BS02 dna N/A GO:0000786 ... Q71DI3 N/A
    960613 9e2d:F (6.08) BS01 dna N/A GO:0000781 ... P62805 N/A
    960614 9e2d:F (6.08) BS02 dna N/A GO:0000781 ... P62805 N/A
    960615 9e2d:G (6.08) BS01 dna N/A N/A P0C0S8 N/A
    960616 9e2d:G (6.08) BS02 dna N/A N/A P0C0S8 N/A
    960617 9e2d:H (6.08) BS01 dna N/A N/A P06899 N/A
    960618 9e2d:K (6.08) BS01 dna N/A N/A Q9Y6K1 N/A
    960619 9e2d:K (6.08) BS02 dna N/A N/A Q9Y6K1 N/A
    960620 9e2d:K (6.08) BS03 ZN N/A N/A Q9Y6K1 N/A
    960621 9e2d:K (6.08) BS04 ZN N/A N/A Q9Y6K1 N/A
    960622 9e2d:K (6.08) BS05 ZN N/A N/A Q9Y6K1 N/A
    960623 9e2d:K (6.08) BS06 SAH N/A N/A Q9Y6K1 N/A
    960624 9e2d:L (6.08) BS01 ZN N/A N/A Q9UBC3 N/A
    960625 9e2d:L (6.08) BS02 ZN N/A N/A Q9UBC3 N/A
    960626 9e2d:L (6.08) BS03 ZN N/A N/A Q9UBC3 N/A
    960627 9e2d:M (6.08) BS01 dna N/A GO:0000786 ... Q71DI3 N/A
    960628 9e2d:M (6.08) BS02 dna N/A GO:0000786 ... Q71DI3 N/A
    960629 9e2d:N (6.08) BS01 dna N/A GO:0000781 ... P62805 N/A
    960630 9e2d:O (6.08) BS01 dna N/A N/A P0C0S8 N/A
    960631 9e2d:O (6.08) BS02 dna N/A N/A P0C0S8 N/A
    960632 9e2d:P (6.08) BS01 dna N/A N/A P06899 N/A
    960633 9e2d:Q (6.08) BS01 dna N/A GO:0000786 ... Q71DI3 N/A
    960634 9e2d:Q (6.08) BS02 dna N/A GO:0000786 ... Q71DI3 N/A
    960635 9e2d:R (6.08) BS01 dna N/A GO:0000781 ... P62805 N/A
    960636 9e2d:R (6.08) BS02 dna N/A GO:0000781 ... P62805 N/A
    960637 9e2d:S (6.08) BS01 dna N/A N/A P0C0S8 N/A
    960638 9e2d:T (6.08) BS01 dna N/A N/A P06899 N/A
    960639 9e2d:U (6.08) BS01 ZN N/A N/A Q9Y6K1 N/A
    960640 9e2d:U (6.08) BS02 ZN N/A N/A Q9Y6K1 N/A
    960641 9e2d:U (6.08) BS03 ZN N/A N/A Q9Y6K1 N/A
    960642 9e2d:U (6.08) BS04 SAH N/A N/A Q9Y6K1 N/A
    960643 9e2d:V (6.08) BS01 ZN N/A N/A Q9UBC3 N/A
    960644 9e2d:V (6.08) BS02 ZN N/A N/A Q9UBC3 N/A
    960645 9e2d:V (6.08) BS03 ZN N/A N/A Q9UBC3 N/A
    960646 9e2d:W (6.08) BS01 ZN N/A N/A Q9Y6K1 N/A
    960647 9e2d:W (6.08) BS02 ZN N/A N/A Q9Y6K1 N/A
    960648 9e2d:W (6.08) BS03 ZN N/A N/A Q9Y6K1 N/A
    960649 9e2d:W (6.08) BS04 SAH N/A N/A Q9Y6K1 N/A
    960650 9e2d:Y (6.08) BS01 ZN N/A N/A Q9Y6K1 N/A
    960651 9e2d:Y (6.08) BS02 ZN N/A N/A Q9Y6K1 N/A
    960652 9e2d:Y (6.08) BS03 ZN N/A N/A Q9Y6K1 N/A
    960653 9e2d:Y (6.08) BS04 SAH N/A N/A Q9Y6K1 N/A
    960654 9e2e:A (4.0) BS01 ADP N/A GO:0000146 ... P68033 40412797
    960655 9e2e:B (4.0) BS01 ADP N/A GO:0000146 ... P68033 40412797
    960656 9e2e:C (4.0) BS01 ADP N/A GO:0000146 ... P68033 40412797
    960657 9e2e:D (4.0) BS01 ADP N/A GO:0000146 ... P68033 40412797
    960658 9e2e:E (4.0) BS01 ADP N/A GO:0000146 ... P68033 40412797
    960659 9e2e:F (4.0) BS01 ADP N/A GO:0000146 ... P68033 40412797
    960660 9e2f:A (5.9) BS01 dna N/A GO:0000786 ... Q71DI3 N/A
    960661 9e2f:A (5.9) BS02 dna N/A GO:0000786 ... Q71DI3 N/A
    960662 9e2f:B (5.9) BS01 dna N/A GO:0000781 ... P62805 N/A
    960663 9e2f:B (5.9) BS02 dna N/A GO:0000781 ... P62805 N/A
    960664 9e2f:C (5.9) BS01 dna N/A N/A P0C0S8 N/A
    960665 9e2f:C (5.9) BS02 dna N/A N/A P0C0S8 N/A
    960666 9e2f:D (5.9) BS01 dna N/A N/A P06899 N/A
    960667 9e2f:D (5.9) BS02 dna N/A N/A P06899 N/A
    960668 9e2f:E (5.9) BS01 dna N/A GO:0000786 ... Q71DI3 N/A
    960669 9e2f:E (5.9) BS02 dna N/A GO:0000786 ... Q71DI3 N/A
    960670 9e2f:F (5.9) BS01 dna N/A GO:0000781 ... P62805 N/A
    960671 9e2f:F (5.9) BS02 dna N/A GO:0000781 ... P62805 N/A
    960672 9e2f:G (5.9) BS01 dna N/A N/A P0C0S8 N/A
    960673 9e2f:G (5.9) BS02 dna N/A N/A P0C0S8 N/A
    960674 9e2f:H (5.9) BS01 dna N/A N/A P06899 N/A
    960675 9e2f:H (5.9) BS02 dna N/A N/A P06899 N/A
    960676 9e2f:M (5.9) BS01 dna N/A GO:0000786 ... Q71DI3 N/A
    960677 9e2f:M (5.9) BS02 dna N/A GO:0000786 ... Q71DI3 N/A
    960678 9e2f:N (5.9) BS01 dna N/A GO:0000781 ... P62805 N/A
    960679 9e2f:O (5.9) BS01 dna N/A N/A P0C0S8 N/A
    960680 9e2f:O (5.9) BS02 dna N/A N/A P0C0S8 N/A
    960681 9e2f:P (5.9) BS01 dna N/A N/A P06899 N/A
    960682 9e2f:Q (5.9) BS01 dna N/A GO:0000786 ... Q71DI3 N/A
    960683 9e2f:Q (5.9) BS02 dna N/A GO:0000786 ... Q71DI3 N/A
    960684 9e2f:R (5.9) BS01 dna N/A GO:0000781 ... P62805 N/A
    960685 9e2f:R (5.9) BS02 dna N/A GO:0000781 ... P62805 N/A
    960686 9e2f:S (5.9) BS01 dna N/A N/A P0C0S8 N/A
    960687 9e2f:S (5.9) BS02 dna N/A N/A P0C0S8 N/A
    960688 9e2f:T (5.9) BS01 dna N/A N/A P06899 N/A
    960689 9e2g:2I (2.8) BS01 ZN N/A GO:0005930 ... Q57XA7 40080582
    960690 9e2g:2I (2.8) BS02 ZN N/A GO:0005930 ... Q57XA7 40080582
    960691 9e2g:2J (2.8) BS01 ZN N/A GO:0005930 ... Q57XA7 40080582
    960692 9e2g:2K (2.8) BS01 ZN N/A GO:0005930 ... Q57XA7 40080582
    960693 9e2g:2N (2.8) BS01 ZN N/A GO:0005737 ... Q383J9 40080582
    960694 9e2g:2P (2.8) BS01 peptide N/A GO:0005929 ... Q57UZ3 40080582
    960695 9e2g:3R (2.8) BS01 peptide N/A N/A Q38AQ1 40080582
    960696 9e2g:3V (2.8) BS01 ZN N/A GO:0005737 ... Q583F4 40080582
    960697 9e2g:3V (2.8) BS02 ZN N/A GO:0005737 ... Q583F4 40080582
    960698 9e2g:3W (2.8) BS01 ZN N/A GO:0005737 ... Q583F4 40080582
    960699 9e2g:3W (2.8) BS02 ZN N/A GO:0005737 ... Q583F4 40080582
    960700 9e2g:3W (2.8) BS03 ZN N/A GO:0005737 ... Q583F4 40080582
    960701 9e2g:3X (2.8) BS01 ZN N/A GO:0005737 ... Q583F4 40080582
    960702 9e2g:3X (2.8) BS02 ZN N/A GO:0005737 ... Q583F4 40080582
    960703 9e2g:3X (2.8) BS03 ZN N/A GO:0005737 ... Q583F4 40080582
    960704 9e2g:3Y (2.8) BS01 ZN N/A GO:0005737 ... Q583F5 40080582
    960705 9e2g:3Y (2.8) BS02 ZN N/A GO:0005737 ... Q583F5 40080582
    960706 9e2g:4A (2.8) BS01 ZN N/A GO:0005737 ... Q583F5 40080582
    960707 9e2g:4B (2.8) BS01 ZN N/A GO:0005929 ... Q388F3 40080582
    960708 9e2g:4C (2.8) BS01 ZN N/A GO:0005929 ... Q388F3 40080582
    960709 9e2g:4D (2.8) BS01 ZN N/A GO:0005929 ... Q388F3 40080582
    960710 9e2g:4F (2.8) BS01 ZN N/A GO:0030990 ... Q388F2 40080582
    960711 9e2g:4F (2.8) BS02 ZN N/A GO:0030990 ... Q388F2 40080582
    960712 9e2g:4F (2.8) BS03 ZN N/A GO:0030990 ... Q388F2 40080582
    960713 9e2g:4I (2.8) BS01 peptide N/A GO:0005737 ... Q57V66 40080582
    960714 9e2g:AA (2.8) BS01 GTP N/A GO:0000226 ... Q4GYY5 40080582
    960715 9e2g:AB (2.8) BS01 GDP N/A GO:0000226 ... Q4GYY6 40080582
    960716 9e2g:AC (2.8) BS01 GTP N/A GO:0000226 ... Q4GYY5 40080582
    960717 9e2g:AD (2.8) BS01 GDP N/A GO:0000226 ... Q4GYY6 40080582
    960718 9e2g:AE (2.8) BS01 GTP N/A GO:0000226 ... Q4GYY5 40080582
    960719 9e2g:AF (2.8) BS01 GDP N/A GO:0000226 ... Q4GYY6 40080582
    960720 9e2g:AG (2.8) BS01 GTP N/A GO:0000226 ... Q4GYY5 40080582
    960721 9e2g:AH (2.8) BS01 GDP N/A GO:0000226 ... Q4GYY6 40080582
    960722 9e2g:AI (2.8) BS01 GTP N/A GO:0000226 ... Q4GYY5 40080582
    960723 9e2g:AJ (2.8) BS01 GDP N/A GO:0000226 ... Q4GYY6 40080582
    960724 9e2g:AK (2.8) BS01 GTP N/A GO:0000226 ... Q4GYY5 40080582
    960725 9e2g:AL (2.8) BS01 GDP N/A GO:0000226 ... Q4GYY6 40080582
    960726 9e2g:AM (2.8) BS01 GTP N/A GO:0000226 ... Q4GYY5 40080582
    960727 9e2g:AN (2.8) BS01 GDP N/A GO:0000226 ... Q4GYY6 40080582
    960728 9e2g:AO (2.8) BS01 GTP N/A GO:0000226 ... Q4GYY5 40080582
    960729 9e2g:AP (2.8) BS01 GDP N/A GO:0000226 ... Q4GYY6 40080582
    960730 9e2g:AQ (2.8) BS01 GTP N/A GO:0000226 ... Q4GYY5 40080582
    960731 9e2g:AR (2.8) BS01 GDP N/A GO:0000226 ... Q4GYY6 40080582
    960732 9e2g:AS (2.8) BS01 GTP N/A GO:0000226 ... Q4GYY5 40080582
    960733 9e2g:AT (2.8) BS01 GDP N/A GO:0000226 ... Q4GYY6 40080582
    960734 9e2g:AU (2.8) BS01 GTP N/A GO:0000226 ... Q4GYY5 40080582
    960735 9e2g:AV (2.8) BS01 GDP N/A GO:0000226 ... Q4GYY6 40080582
    960736 9e2g:AW (2.8) BS01 GTP N/A GO:0000226 ... Q4GYY5 40080582
    960737 9e2g:AX (2.8) BS01 GDP N/A GO:0000226 ... Q4GYY6 40080582
    960738 9e2g:AY (2.8) BS01 GTP N/A GO:0000226 ... Q4GYY5 40080582
    960739 9e2g:AZ (2.8) BS01 GDP N/A GO:0000226 ... Q4GYY6 40080582
    960740 9e2g:BA (2.8) BS01 GTP N/A GO:0000226 ... Q4GYY5 40080582
    960741 9e2g:BB (2.8) BS01 GDP N/A GO:0000226 ... Q4GYY6 40080582
    960742 9e2g:BC (2.8) BS01 GTP N/A GO:0000226 ... Q4GYY5 40080582
    960743 9e2g:BD (2.8) BS01 GDP N/A GO:0000226 ... Q4GYY6 40080582
    960744 9e2g:BE (2.8) BS01 GTP N/A GO:0000226 ... Q4GYY5 40080582
    960745 9e2g:BF (2.8) BS01 GDP N/A GO:0000226 ... Q4GYY6 40080582
    960746 9e2g:BG (2.8) BS01 GTP N/A GO:0000226 ... Q4GYY5 40080582
    960747 9e2g:BH (2.8) BS01 GDP N/A GO:0000226 ... Q4GYY6 40080582
    960748 9e2g:BI (2.8) BS01 GTP N/A GO:0000226 ... Q4GYY5 40080582
    960749 9e2g:BJ (2.8) BS01 GDP N/A GO:0000226 ... Q4GYY6 40080582
    960750 9e2g:BK (2.8) BS01 GTP N/A GO:0000226 ... Q4GYY5 40080582
    960751 9e2g:BL (2.8) BS01 GDP N/A GO:0000226 ... Q4GYY6 40080582
    960752 9e2g:BM (2.8) BS01 GTP N/A GO:0000226 ... Q4GYY5 40080582
    960753 9e2g:BN (2.8) BS01 GDP N/A GO:0000226 ... Q4GYY6 40080582
    960754 9e2g:BO (2.8) BS01 GTP N/A GO:0000226 ... Q4GYY5 40080582
    960755 9e2g:BP (2.8) BS01 GDP N/A GO:0000226 ... Q4GYY6 40080582
    960756 9e2g:BQ (2.8) BS01 GTP N/A GO:0000226 ... Q4GYY5 40080582
    960757 9e2g:BR (2.8) BS01 GDP N/A GO:0000226 ... Q4GYY6 40080582
    960758 9e2g:BS (2.8) BS01 GTP N/A GO:0000226 ... Q4GYY5 40080582
    960759 9e2g:BT (2.8) BS01 GDP N/A GO:0000226 ... Q4GYY6 40080582
    960760 9e2g:BU (2.8) BS01 GTP N/A GO:0000226 ... Q4GYY5 40080582
    960761 9e2g:BV (2.8) BS01 GDP N/A GO:0000226 ... Q4GYY6 40080582
    960762 9e2g:BW (2.8) BS01 GTP N/A GO:0000226 ... Q4GYY5 40080582
    960763 9e2g:BX (2.8) BS01 GTP N/A GO:0000226 ... Q4GYY5 40080582
    960764 9e2g:BY (2.8) BS01 GDP N/A GO:0000226 ... Q4GYY6 40080582
    960765 9e2g:BZ (2.8) BS01 GTP N/A GO:0000226 ... Q4GYY5 40080582
    960766 9e2g:CA (2.8) BS01 GDP N/A GO:0000226 ... Q4GYY6 40080582
    960767 9e2g:CB (2.8) BS01 GTP N/A GO:0000226 ... Q4GYY5 40080582
    960768 9e2g:CC (2.8) BS01 GDP N/A GO:0000226 ... Q4GYY6 40080582
    960769 9e2g:CD (2.8) BS01 GTP N/A GO:0000226 ... Q4GYY5 40080582
    960770 9e2g:CE (2.8) BS01 GDP N/A GO:0000226 ... Q4GYY6 40080582
    960771 9e2g:CF (2.8) BS01 GTP N/A GO:0000226 ... Q4GYY5 40080582
    960772 9e2g:CG (2.8) BS01 GDP N/A GO:0000226 ... Q4GYY6 40080582
    960773 9e2g:CH (2.8) BS01 GTP N/A GO:0000226 ... Q4GYY5 40080582
    960774 9e2g:CI (2.8) BS01 GDP N/A GO:0000226 ... Q4GYY6 40080582
    960775 9e2g:CJ (2.8) BS01 GTP N/A GO:0000226 ... Q4GYY5 40080582
    960776 9e2g:CL (2.8) BS01 GDP N/A GO:0000226 ... Q4GYY6 40080582
    960777 9e2g:CM (2.8) BS01 GTP N/A GO:0000226 ... Q4GYY5 40080582
    960778 9e2g:CN (2.8) BS01 GDP N/A GO:0000226 ... Q4GYY6 40080582
    960779 9e2g:CO (2.8) BS01 GTP N/A GO:0000226 ... Q4GYY5 40080582
    960780 9e2g:CP (2.8) BS01 GDP N/A GO:0000226 ... Q4GYY6 40080582
    960781 9e2g:CQ (2.8) BS01 GTP N/A GO:0000226 ... Q4GYY5 40080582
    960782 9e2g:CR (2.8) BS01 GDP N/A GO:0000226 ... Q4GYY6 40080582
    960783 9e2g:CS (2.8) BS01 GTP N/A GO:0000226 ... Q4GYY5 40080582
    960784 9e2g:CT (2.8) BS01 GDP N/A GO:0000226 ... Q4GYY6 40080582
    960785 9e2g:CU (2.8) BS01 GTP N/A GO:0000226 ... Q4GYY5 40080582
    960786 9e2g:CV (2.8) BS01 GDP N/A GO:0000226 ... Q4GYY6 40080582
    960787 9e2g:CW (2.8) BS01 GTP N/A GO:0000226 ... Q4GYY5 40080582
    960788 9e2g:CX (2.8) BS01 GDP N/A GO:0000226 ... Q4GYY6 40080582
    960789 9e2g:CY (2.8) BS01 GTP N/A GO:0000226 ... Q4GYY5 40080582
    960790 9e2g:CZ (2.8) BS01 GDP N/A GO:0000226 ... Q4GYY6 40080582
    960791 9e2g:DA (2.8) BS01 GTP N/A GO:0000226 ... Q4GYY5 40080582
    960792 9e2g:DB (2.8) BS01 GDP N/A GO:0000226 ... Q4GYY6 40080582
    960793 9e2g:DC (2.8) BS01 GTP N/A GO:0000226 ... Q4GYY5 40080582
    960794 9e2g:DD (2.8) BS01 GDP N/A GO:0000226 ... Q4GYY6 40080582
    960795 9e2g:DE (2.8) BS01 GTP N/A GO:0000226 ... Q4GYY5 40080582
    960796 9e2g:DF (2.8) BS01 GDP N/A GO:0000226 ... Q4GYY6 40080582
    960797 9e2g:DG (2.8) BS01 GTP N/A GO:0000226 ... Q4GYY5 40080582
    960798 9e2g:DH (2.8) BS01 GDP N/A GO:0000226 ... Q4GYY6 40080582
    960799 9e2g:DI (2.8) BS01 GTP N/A GO:0000226 ... Q4GYY5 40080582
    960800 9e2g:DJ (2.8) BS01 GDP N/A GO:0000226 ... Q4GYY6 40080582

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).