SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    961001 9e2g:KP (2.8) BS01 GTP N/A GO:0000226 ... Q4GYY5 40080582
    961002 9e2g:KQ (2.8) BS01 GTP N/A GO:0000226 ... Q4GYY5 40080582
    961003 9e2g:KR (2.8) BS01 GDP N/A GO:0000226 ... Q4GYY6 40080582
    961004 9e2g:KS (2.8) BS01 GTP N/A GO:0000226 ... Q4GYY5 40080582
    961005 9e2g:KT (2.8) BS01 GDP N/A GO:0000226 ... Q4GYY6 40080582
    961006 9e2g:KU (2.8) BS01 GTP N/A GO:0000226 ... Q4GYY5 40080582
    961007 9e2g:KV (2.8) BS01 GDP N/A GO:0000226 ... Q4GYY6 40080582
    961008 9e2g:KW (2.8) BS01 GTP N/A GO:0000226 ... Q4GYY5 40080582
    961009 9e2g:KX (2.8) BS01 GDP N/A GO:0000226 ... Q4GYY6 40080582
    961010 9e2g:KY (2.8) BS01 GTP N/A GO:0000226 ... Q4GYY5 40080582
    961011 9e2g:KZ (2.8) BS01 GDP N/A GO:0000226 ... Q4GYY6 40080582
    961012 9e2g:LA (2.8) BS01 GTP N/A GO:0000226 ... Q4GYY5 40080582
    961013 9e2g:LB (2.8) BS01 GDP N/A GO:0000226 ... Q4GYY6 40080582
    961014 9e2k:B (3.0) BS01 POP N/A GO:0004311 ... A0A0P0ZD79 40456796
    961015 9e2l:B (3.08) BS01 POP N/A GO:0004311 ... A0A0P0ZD79 40456796
    961016 9e2m:B (2.98) BS01 POP N/A GO:0004311 ... A0A0P0ZD79 40456796
    961017 9e2p:A (3.57) BS01 GTP N/A GO:0000287 ... Q8IXI2 N/A
    961018 9e2p:A (3.57) BS02 GTP N/A GO:0000287 ... Q8IXI2 N/A
    961019 9e2p:A (3.57) BS03 CA N/A GO:0000287 ... Q8IXI2 N/A
    961020 9e2p:A (3.57) BS04 CA N/A GO:0000287 ... Q8IXI2 N/A
    961021 9e2p:C (3.57) BS01 GTP N/A GO:0000287 ... Q8IXI2 N/A
    961022 9e2p:C (3.57) BS02 GTP N/A GO:0000287 ... Q8IXI2 N/A
    961023 9e2p:C (3.57) BS03 CA N/A GO:0000287 ... Q8IXI2 N/A
    961024 9e2p:C (3.57) BS04 CA N/A GO:0000287 ... Q8IXI2 N/A
    961025 9e2q:A (3.14) BS01 dna N/A GO:0000786 ... Q71DI3 N/A
    961026 9e2q:A (3.14) BS02 dna N/A GO:0000786 ... Q71DI3 N/A
    961027 9e2q:B (3.14) BS01 dna N/A GO:0000781 ... P62805 N/A
    961028 9e2q:B (3.14) BS02 dna N/A GO:0000781 ... P62805 N/A
    961029 9e2q:C (3.14) BS01 dna N/A N/A P0C0S8 N/A
    961030 9e2q:C (3.14) BS02 dna N/A N/A P0C0S8 N/A
    961031 9e2q:D (3.14) BS01 dna N/A N/A P06899 N/A
    961032 9e2q:D (3.14) BS02 dna N/A N/A P06899 N/A
    961033 9e2q:E (3.14) BS01 dna N/A GO:0000786 ... Q71DI3 N/A
    961034 9e2q:E (3.14) BS02 dna N/A GO:0000786 ... Q71DI3 N/A
    961035 9e2q:F (3.14) BS01 dna N/A GO:0000781 ... P62805 N/A
    961036 9e2q:F (3.14) BS02 dna N/A GO:0000781 ... P62805 N/A
    961037 9e2q:G (3.14) BS01 dna N/A N/A P0C0S8 N/A
    961038 9e2q:G (3.14) BS02 dna N/A N/A P0C0S8 N/A
    961039 9e2q:H (3.14) BS01 dna N/A N/A P06899 N/A
    961040 9e2q:H (3.14) BS02 dna N/A N/A P06899 N/A
    961041 9e2q:K (3.14) BS01 dna N/A N/A Q9Y6K1 N/A
    961042 9e2q:K (3.14) BS02 ZN N/A N/A Q9Y6K1 N/A
    961043 9e2q:K (3.14) BS03 ZN N/A N/A Q9Y6K1 N/A
    961044 9e2q:K (3.14) BS04 ZN N/A N/A Q9Y6K1 N/A
    961045 9e2q:K (3.14) BS05 SAH N/A N/A Q9Y6K1 N/A
    961046 9e2q:L (3.14) BS01 ZN N/A N/A Q9UBC3 N/A
    961047 9e2q:L (3.14) BS02 ZN N/A N/A Q9UBC3 N/A
    961048 9e2q:L (3.14) BS03 ZN N/A N/A Q9UBC3 N/A
    961049 9e2q:M (3.14) BS01 dna N/A GO:0000786 ... Q71DI3 N/A
    961050 9e2q:M (3.14) BS02 dna N/A GO:0000786 ... Q71DI3 N/A
    961051 9e2q:N (3.14) BS01 dna N/A GO:0000781 ... P62805 N/A
    961052 9e2q:O (3.14) BS01 dna N/A N/A P0C0S8 N/A
    961053 9e2q:O (3.14) BS02 dna N/A N/A P0C0S8 N/A
    961054 9e2q:P (3.14) BS01 dna N/A N/A P06899 N/A
    961055 9e2q:P (3.14) BS02 dna N/A N/A P06899 N/A
    961056 9e2q:Q (3.14) BS01 dna N/A GO:0000786 ... Q71DI3 N/A
    961057 9e2q:Q (3.14) BS02 dna N/A GO:0000786 ... Q71DI3 N/A
    961058 9e2q:R (3.14) BS01 dna N/A GO:0000781 ... P62805 N/A
    961059 9e2q:R (3.14) BS02 dna N/A GO:0000781 ... P62805 N/A
    961060 9e2q:S (3.14) BS01 dna N/A N/A P0C0S8 N/A
    961061 9e2q:S (3.14) BS02 dna N/A N/A P0C0S8 N/A
    961062 9e2q:T (3.14) BS01 dna N/A N/A P06899 N/A
    961063 9e2q:U (3.14) BS01 dna N/A N/A Q9Y6K1 N/A
    961064 9e2q:U (3.14) BS02 ZN N/A N/A Q9Y6K1 N/A
    961065 9e2q:U (3.14) BS03 ZN N/A N/A Q9Y6K1 N/A
    961066 9e2q:U (3.14) BS04 ZN N/A N/A Q9Y6K1 N/A
    961067 9e2q:U (3.14) BS05 SAH N/A N/A Q9Y6K1 N/A
    961068 9e2q:V (3.14) BS01 ZN N/A N/A Q9UBC3 N/A
    961069 9e2q:V (3.14) BS02 ZN N/A N/A Q9UBC3 N/A
    961070 9e2q:V (3.14) BS03 ZN N/A N/A Q9UBC3 N/A
    961071 9e2q:W (3.14) BS01 dna N/A N/A Q9Y6K1 N/A
    961072 9e2q:W (3.14) BS02 dna N/A N/A Q9Y6K1 N/A
    961073 9e2q:W (3.14) BS03 ZN N/A N/A Q9Y6K1 N/A
    961074 9e2q:W (3.14) BS04 ZN N/A N/A Q9Y6K1 N/A
    961075 9e2q:W (3.14) BS05 ZN N/A N/A Q9Y6K1 N/A
    961076 9e2q:W (3.14) BS06 SAH N/A N/A Q9Y6K1 N/A
    961077 9e2q:Y (3.14) BS01 ZN N/A N/A Q9Y6K1 N/A
    961078 9e2q:Y (3.14) BS02 ZN N/A N/A Q9Y6K1 N/A
    961079 9e2q:Y (3.14) BS03 ZN N/A N/A Q9Y6K1 N/A
    961080 9e2q:Y (3.14) BS04 SAH N/A N/A Q9Y6K1 N/A
    961081 9e2r:A (7.71) BS01 dna N/A GO:0000786 ... Q71DI3 N/A
    961082 9e2r:A (7.71) BS02 dna N/A GO:0000786 ... Q71DI3 N/A
    961083 9e2r:B (7.71) BS01 dna N/A GO:0000781 ... P62805 N/A
    961084 9e2r:B (7.71) BS02 dna N/A GO:0000781 ... P62805 N/A
    961085 9e2r:C (7.71) BS01 dna N/A N/A P0C0S8 N/A
    961086 9e2r:C (7.71) BS02 dna N/A N/A P0C0S8 N/A
    961087 9e2r:D (7.71) BS01 dna N/A N/A P06899 N/A
    961088 9e2r:D (7.71) BS02 dna N/A N/A P06899 N/A
    961089 9e2r:E (7.71) BS01 dna N/A GO:0000786 ... Q71DI3 N/A
    961090 9e2r:E (7.71) BS02 dna N/A GO:0000786 ... Q71DI3 N/A
    961091 9e2r:F (7.71) BS01 dna N/A GO:0000781 ... P62805 N/A
    961092 9e2r:F (7.71) BS02 dna N/A GO:0000781 ... P62805 N/A
    961093 9e2r:G (7.71) BS01 dna N/A N/A P0C0S8 N/A
    961094 9e2r:G (7.71) BS02 dna N/A N/A P0C0S8 N/A
    961095 9e2r:H (7.71) BS01 dna N/A N/A P06899 N/A
    961096 9e2r:H (7.71) BS02 dna N/A N/A P06899 N/A
    961097 9e2r:K (7.71) BS01 dna N/A N/A Q9Y6K1 N/A
    961098 9e2r:K (7.71) BS02 ZN N/A N/A Q9Y6K1 N/A
    961099 9e2r:K (7.71) BS03 ZN N/A N/A Q9Y6K1 N/A
    961100 9e2r:K (7.71) BS04 ZN N/A N/A Q9Y6K1 N/A
    961101 9e2r:K (7.71) BS05 SAH N/A N/A Q9Y6K1 N/A
    961102 9e2r:L (7.71) BS01 ZN N/A N/A Q9UBC3 N/A
    961103 9e2r:L (7.71) BS02 ZN N/A N/A Q9UBC3 N/A
    961104 9e2r:L (7.71) BS03 ZN N/A N/A Q9UBC3 N/A
    961105 9e2r:M (7.71) BS01 dna N/A GO:0000786 ... Q71DI3 N/A
    961106 9e2r:M (7.71) BS02 dna N/A GO:0000786 ... Q71DI3 N/A
    961107 9e2r:N (7.71) BS01 dna N/A GO:0000781 ... P62805 N/A
    961108 9e2r:N (7.71) BS02 dna N/A GO:0000781 ... P62805 N/A
    961109 9e2r:O (7.71) BS01 dna N/A N/A P0C0S8 N/A
    961110 9e2r:O (7.71) BS02 dna N/A N/A P0C0S8 N/A
    961111 9e2r:P (7.71) BS01 dna N/A N/A P06899 N/A
    961112 9e2r:Q (7.71) BS01 dna N/A GO:0000786 ... Q71DI3 N/A
    961113 9e2r:Q (7.71) BS02 dna N/A GO:0000786 ... Q71DI3 N/A
    961114 9e2r:R (7.71) BS01 dna N/A GO:0000781 ... P62805 N/A
    961115 9e2r:R (7.71) BS02 dna N/A GO:0000781 ... P62805 N/A
    961116 9e2r:S (7.71) BS01 dna N/A N/A P0C0S8 N/A
    961117 9e2r:S (7.71) BS02 dna N/A N/A P0C0S8 N/A
    961118 9e2r:T (7.71) BS01 dna N/A N/A P06899 N/A
    961119 9e2r:U (7.71) BS01 dna N/A N/A Q9Y6K1 N/A
    961120 9e2r:U (7.71) BS02 dna N/A N/A Q9Y6K1 N/A
    961121 9e2r:U (7.71) BS03 ZN N/A N/A Q9Y6K1 N/A
    961122 9e2r:U (7.71) BS04 ZN N/A N/A Q9Y6K1 N/A
    961123 9e2r:U (7.71) BS05 ZN N/A N/A Q9Y6K1 N/A
    961124 9e2r:U (7.71) BS06 SAH N/A N/A Q9Y6K1 N/A
    961125 9e2r:V (7.71) BS01 ZN N/A N/A Q9UBC3 N/A
    961126 9e2r:V (7.71) BS02 ZN N/A N/A Q9UBC3 N/A
    961127 9e2r:V (7.71) BS03 ZN N/A N/A Q9UBC3 N/A
    961128 9e2r:W (7.71) BS01 dna N/A N/A Q9Y6K1 N/A
    961129 9e2r:W (7.71) BS02 dna N/A N/A Q9Y6K1 N/A
    961130 9e2r:W (7.71) BS03 ZN N/A N/A Q9Y6K1 N/A
    961131 9e2r:W (7.71) BS04 ZN N/A N/A Q9Y6K1 N/A
    961132 9e2r:W (7.71) BS05 ZN N/A N/A Q9Y6K1 N/A
    961133 9e2r:W (7.71) BS06 SAH N/A N/A Q9Y6K1 N/A
    961134 9e2r:Y (7.71) BS01 dna N/A N/A Q9Y6K1 N/A
    961135 9e2r:Y (7.71) BS02 ZN N/A N/A Q9Y6K1 N/A
    961136 9e2r:Y (7.71) BS03 ZN N/A N/A Q9Y6K1 N/A
    961137 9e2r:Y (7.71) BS04 ZN N/A N/A Q9Y6K1 N/A
    961138 9e2r:Y (7.71) BS05 SAH N/A N/A Q9Y6K1 N/A
    961139 9e2s:B (3.7) BS01 ADP N/A GO:0002199 ... P50990 40849413
    961140 9e2s:B (3.7) BS02 AF3 N/A GO:0002199 ... P50990 40849413
    961141 9e2s:C (3.7) BS01 ADP N/A GO:0005524 ... Q99832 40849413
    961142 9e2s:C (3.7) BS02 AF3 N/A GO:0005524 ... Q99832 40849413
    961143 9e2s:D (3.7) BS01 AF3 N/A GO:0003730 ... P48643 40849413
    961144 9e2s:D (3.7) BS02 ADP N/A GO:0003730 ... P48643 40849413
    961145 9e2s:E (3.7) BS01 AF3 N/A GO:0002199 ... P78371 40849413
    961146 9e2s:E (3.7) BS02 ADP N/A GO:0002199 ... P78371 40849413
    961147 9e2s:F (3.7) BS01 ADP N/A GO:0002199 ... P50991 40849413
    961148 9e2s:F (3.7) BS02 AF3 N/A GO:0002199 ... P50991 40849413
    961149 9e2s:G (3.7) BS01 AF3 N/A GO:0000242 ... P17987 40849413
    961150 9e2s:G (3.7) BS02 ADP N/A GO:0000242 ... P17987 40849413
    961151 9e2s:H (3.7) BS01 ADP N/A GO:0002199 ... P49368 40849413
    961152 9e2s:H (3.7) BS02 AF3 N/A GO:0002199 ... P49368 40849413
    961153 9e2s:I (3.7) BS01 AF3 N/A GO:0003723 ... P40227 40849413
    961154 9e2s:I (3.7) BS02 ADP N/A GO:0003723 ... P40227 40849413
    961155 9e2s:b (3.7) BS01 AF3 N/A GO:0002199 ... P50990 40849413
    961156 9e2s:b (3.7) BS02 ADP N/A GO:0002199 ... P50990 40849413
    961157 9e2s:c (3.7) BS01 ADP N/A GO:0005524 ... Q99832 40849413
    961158 9e2s:c (3.7) BS02 AF3 N/A GO:0005524 ... Q99832 40849413
    961159 9e2s:d (3.7) BS01 ADP N/A GO:0003730 ... P48643 40849413
    961160 9e2s:d (3.7) BS02 AF3 N/A GO:0003730 ... P48643 40849413
    961161 9e2s:e (3.7) BS01 ADP N/A GO:0002199 ... P78371 40849413
    961162 9e2s:e (3.7) BS02 AF3 N/A GO:0002199 ... P78371 40849413
    961163 9e2s:f (3.7) BS01 AF3 N/A GO:0002199 ... P50991 40849413
    961164 9e2s:f (3.7) BS02 ADP N/A GO:0002199 ... P50991 40849413
    961165 9e2s:g (3.7) BS01 ADP N/A GO:0000242 ... P17987 40849413
    961166 9e2s:g (3.7) BS02 AF3 N/A GO:0000242 ... P17987 40849413
    961167 9e2s:h (3.7) BS01 AF3 N/A GO:0002199 ... P49368 40849413
    961168 9e2s:h (3.7) BS02 ADP N/A GO:0002199 ... P49368 40849413
    961169 9e2s:i (3.7) BS01 AF3 N/A GO:0003723 ... P40227 40849413
    961170 9e2s:i (3.7) BS02 ADP N/A GO:0003723 ... P40227 40849413
    961171 9e2u:B (4.11) BS01 RN9 N/A GO:0005515 ... Q96SW2 40845806
    961172 9e2u:B (4.11) BS02 ZN N/A GO:0005515 ... Q96SW2 40845806
    961173 9e2u:B (4.11) BS03 RN9 N/A GO:0005515 ... Q96SW2 40845806
    961174 9e2u:D (4.11) BS01 RN9 N/A GO:0005515 ... Q96SW2 40845806
    961175 9e2u:D (4.11) BS02 ZN N/A GO:0005515 ... Q96SW2 40845806
    961176 9e2u:D (4.11) BS03 RN9 N/A GO:0005515 ... Q96SW2 40845806
    961177 9e2u:F (4.11) BS01 RN9 N/A GO:0005515 ... Q96SW2 40845806
    961178 9e2u:F (4.11) BS02 ZN N/A GO:0005515 ... Q96SW2 40845806
    961179 9e2u:H (4.11) BS01 RN9 N/A GO:0005515 ... Q96SW2 40845806
    961180 9e2u:H (4.11) BS02 ZN N/A GO:0005515 ... Q96SW2 40845806
    961181 9e2u:J (4.11) BS01 RN9 N/A GO:0005515 ... Q96SW2 40845806
    961182 9e2u:J (4.11) BS02 ZN N/A GO:0005515 ... Q96SW2 40845806
    961183 9e2u:L (4.11) BS01 RN9 N/A GO:0005515 ... Q96SW2 40845806
    961184 9e2u:L (4.11) BS02 ZN N/A GO:0005515 ... Q96SW2 40845806
    961185 9e2u:N (4.11) BS01 RN9 N/A GO:0005515 ... Q96SW2 40845806
    961186 9e2u:N (4.11) BS02 ZN N/A GO:0005515 ... Q96SW2 40845806
    961187 9e2u:P (4.11) BS01 RN9 N/A GO:0005515 ... Q96SW2 40845806
    961188 9e2u:P (4.11) BS02 RN9 N/A GO:0005515 ... Q96SW2 40845806
    961189 9e2u:P (4.11) BS03 ZN N/A GO:0005515 ... Q96SW2 40845806
    961190 9e2u:R (4.11) BS01 RN9 N/A N/A Q53SU9 40845806
    961191 9e2u:R (4.11) BS02 ZN N/A N/A Q53SU9 40845806
    961192 9e2u:R (4.11) BS03 ZN N/A N/A Q53SU9 40845806
    961193 9e2u:R (4.11) BS04 ZN N/A N/A Q53SU9 40845806
    961194 9e2u:S (4.11) BS01 RN9 N/A N/A Q53SU9 40845806
    961195 9e2u:S (4.11) BS02 ZN N/A N/A Q53SU9 40845806
    961196 9e2u:S (4.11) BS03 ZN N/A N/A Q53SU9 40845806
    961197 9e2u:S (4.11) BS04 ZN N/A N/A Q53SU9 40845806
    961198 9e2u:T (4.11) BS01 RN9 N/A N/A Q53SU9 40845806
    961199 9e2u:T (4.11) BS02 ZN N/A N/A Q53SU9 40845806
    961200 9e2u:T (4.11) BS03 ZN N/A N/A Q53SU9 40845806

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).