SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    961201 9e2u:T (4.11) BS04 ZN N/A N/A Q53SU9 40845806
    961202 9e2u:U (4.11) BS01 ZN N/A N/A Q53SU9 40845806
    961203 9e2u:U (4.11) BS02 ZN N/A N/A Q53SU9 40845806
    961204 9e2u:V (4.11) BS01 RN9 N/A N/A Q53SU9 40845806
    961205 9e2u:V (4.11) BS02 ZN N/A N/A Q53SU9 40845806
    961206 9e2u:V (4.11) BS03 ZN N/A N/A Q53SU9 40845806
    961207 9e2u:W (4.11) BS01 RN9 N/A N/A Q53SU9 40845806
    961208 9e2u:W (4.11) BS02 ZN N/A N/A Q53SU9 40845806
    961209 9e2u:W (4.11) BS03 ZN N/A N/A Q53SU9 40845806
    961210 9e2u:X (4.11) BS01 RN9 N/A N/A Q53SU9 40845806
    961211 9e2u:X (4.11) BS02 ZN N/A N/A Q53SU9 40845806
    961212 9e2u:X (4.11) BS03 ZN N/A N/A Q53SU9 40845806
    961213 9e2u:X (4.11) BS04 ZN N/A N/A Q53SU9 40845806
    961214 9e2u:Y (4.11) BS01 RN9 N/A N/A Q53SU9 40845806
    961215 9e2u:Y (4.11) BS02 ZN N/A N/A Q53SU9 40845806
    961216 9e2u:Y (4.11) BS03 ZN N/A N/A Q53SU9 40845806
    961217 9e2u:Y (4.11) BS04 ZN N/A N/A Q53SU9 40845806
    961218 9e2w:2 (3.3) BS01 dna N/A GO:0000727 ... P29469 40048517
    961219 9e2w:2 (3.3) BS02 ADP N/A GO:0000727 ... P29469 40048517
    961220 9e2w:2 (3.3) BS03 ZN N/A GO:0000727 ... P29469 40048517
    961221 9e2w:2 (3.3) BS04 ATP N/A GO:0000727 ... P29469 40048517
    961222 9e2w:3 (3.3) BS01 dna N/A GO:0000727 ... P24279 40048517
    961223 9e2w:3 (3.3) BS02 ATP N/A GO:0000727 ... P24279 40048517
    961224 9e2w:3 (3.3) BS03 ATP N/A GO:0000727 ... P24279 40048517
    961225 9e2w:4 (3.3) BS01 dna N/A GO:0000727 ... P30665 40048517
    961226 9e2w:4 (3.3) BS02 dna N/A GO:0000727 ... P30665 40048517
    961227 9e2w:4 (3.3) BS03 ATP N/A GO:0000727 ... P30665 40048517
    961228 9e2w:4 (3.3) BS04 MG N/A GO:0000727 ... P30665 40048517
    961229 9e2w:4 (3.3) BS05 ZN N/A GO:0000727 ... P30665 40048517
    961230 9e2w:4 (3.3) BS06 ATP N/A GO:0000727 ... P30665 40048517
    961231 9e2w:5 (3.3) BS01 dna N/A GO:0000727 ... P29496 40048517
    961232 9e2w:5 (3.3) BS02 ATP N/A GO:0000727 ... P29496 40048517
    961233 9e2w:5 (3.3) BS03 ATP N/A GO:0000727 ... P29496 40048517
    961234 9e2w:5 (3.3) BS04 ZN N/A GO:0000727 ... P29496 40048517
    961235 9e2w:6 (3.3) BS01 dna N/A GO:0000727 ... P53091 40048517
    961236 9e2w:6 (3.3) BS02 ADP N/A GO:0000727 ... P53091 40048517
    961237 9e2w:6 (3.3) BS03 ATP N/A GO:0000727 ... P53091 40048517
    961238 9e2w:6 (3.3) BS04 ZN N/A GO:0000727 ... P53091 40048517
    961239 9e2w:7 (3.3) BS01 dna N/A GO:0000727 ... P38132 40048517
    961240 9e2w:7 (3.3) BS02 ATP N/A GO:0000727 ... P38132 40048517
    961241 9e2w:7 (3.3) BS03 ZN N/A GO:0000727 ... P38132 40048517
    961242 9e2w:X (3.3) BS01 dna N/A GO:0000076 ... P53840 40048517
    961243 9e2w:X (3.3) BS02 dna N/A GO:0000076 ... P53840 40048517
    961244 9e2w:Y (3.3) BS01 dna N/A GO:0000076 ... Q04659 40048517
    961245 9e2x:2 (3.5) BS01 dna N/A GO:0000727 ... P29469 40048517
    961246 9e2x:2 (3.5) BS02 ATP N/A GO:0000727 ... P29469 40048517
    961247 9e2x:2 (3.5) BS03 ZN N/A GO:0000727 ... P29469 40048517
    961248 9e2x:2 (3.5) BS04 ATP N/A GO:0000727 ... P29469 40048517
    961249 9e2x:3 (3.5) BS01 dna N/A GO:0000727 ... P24279 40048517
    961250 9e2x:3 (3.5) BS02 ATP N/A GO:0000727 ... P24279 40048517
    961251 9e2x:4 (3.5) BS01 dna N/A GO:0000727 ... P30665 40048517
    961252 9e2x:4 (3.5) BS02 dna N/A GO:0000727 ... P30665 40048517
    961253 9e2x:4 (3.5) BS03 ADP N/A GO:0000727 ... P30665 40048517
    961254 9e2x:4 (3.5) BS04 MG N/A GO:0000727 ... P30665 40048517
    961255 9e2x:4 (3.5) BS05 ZN N/A GO:0000727 ... P30665 40048517
    961256 9e2x:4 (3.5) BS06 ADP N/A GO:0000727 ... P30665 40048517
    961257 9e2x:5 (3.5) BS01 dna N/A GO:0000727 ... P29496 40048517
    961258 9e2x:5 (3.5) BS02 ATP N/A GO:0000727 ... P29496 40048517
    961259 9e2x:5 (3.5) BS03 ATP N/A GO:0000727 ... P29496 40048517
    961260 9e2x:5 (3.5) BS04 ZN N/A GO:0000727 ... P29496 40048517
    961261 9e2x:6 (3.5) BS01 dna N/A GO:0000727 ... P53091 40048517
    961262 9e2x:6 (3.5) BS02 ATP N/A GO:0000727 ... P53091 40048517
    961263 9e2x:6 (3.5) BS03 ADP N/A GO:0000727 ... P53091 40048517
    961264 9e2x:6 (3.5) BS04 ZN N/A GO:0000727 ... P53091 40048517
    961265 9e2x:7 (3.5) BS01 dna N/A GO:0000727 ... P38132 40048517
    961266 9e2x:7 (3.5) BS02 ADP N/A GO:0000727 ... P38132 40048517
    961267 9e2x:7 (3.5) BS03 ATP N/A GO:0000727 ... P38132 40048517
    961268 9e2x:7 (3.5) BS04 MG N/A GO:0000727 ... P38132 40048517
    961269 9e2x:7 (3.5) BS05 ZN N/A GO:0000727 ... P38132 40048517
    961270 9e2y:2 (3.2) BS01 dna N/A GO:0000727 ... P29469 40048517
    961271 9e2y:2 (3.2) BS02 ADP N/A GO:0000727 ... P29469 40048517
    961272 9e2y:2 (3.2) BS03 ZN N/A GO:0000727 ... P29469 40048517
    961273 9e2y:2 (3.2) BS04 ATP N/A GO:0000727 ... P29469 40048517
    961274 9e2y:3 (3.2) BS01 dna N/A GO:0000727 ... P24279 40048517
    961275 9e2y:3 (3.2) BS02 ATP N/A GO:0000727 ... P24279 40048517
    961276 9e2y:3 (3.2) BS03 ATP N/A GO:0000727 ... P24279 40048517
    961277 9e2y:4 (3.2) BS01 dna N/A GO:0000727 ... P30665 40048517
    961278 9e2y:4 (3.2) BS02 ATP N/A GO:0000727 ... P30665 40048517
    961279 9e2y:4 (3.2) BS03 ZN N/A GO:0000727 ... P30665 40048517
    961280 9e2y:4 (3.2) BS04 ATP N/A GO:0000727 ... P30665 40048517
    961281 9e2y:5 (3.2) BS01 dna N/A GO:0000727 ... P29496 40048517
    961282 9e2y:5 (3.2) BS02 ATP N/A GO:0000727 ... P29496 40048517
    961283 9e2y:5 (3.2) BS03 ATP N/A GO:0000727 ... P29496 40048517
    961284 9e2y:5 (3.2) BS04 ZN N/A GO:0000727 ... P29496 40048517
    961285 9e2y:6 (3.2) BS01 dna N/A GO:0000727 ... P53091 40048517
    961286 9e2y:6 (3.2) BS02 ADP N/A GO:0000727 ... P53091 40048517
    961287 9e2y:6 (3.2) BS03 ATP N/A GO:0000727 ... P53091 40048517
    961288 9e2y:6 (3.2) BS04 ZN N/A GO:0000727 ... P53091 40048517
    961289 9e2y:7 (3.2) BS01 dna N/A GO:0000727 ... P38132 40048517
    961290 9e2y:7 (3.2) BS02 ATP N/A GO:0000727 ... P38132 40048517
    961291 9e2y:7 (3.2) BS03 ATP N/A GO:0000727 ... P38132 40048517
    961292 9e2y:7 (3.2) BS04 ZN N/A GO:0000727 ... P38132 40048517
    961293 9e2z:2 (2.6) BS01 dna N/A GO:0000228 ... P49736 40048517
    961294 9e2z:2 (2.6) BS02 ADP N/A GO:0000228 ... P49736 40048517
    961295 9e2z:2 (2.6) BS03 ATP N/A GO:0000228 ... P49736 40048517
    961296 9e2z:3 (2.6) BS01 dna N/A GO:0000727 ... P25205 40048517
    961297 9e2z:3 (2.6) BS02 ATP N/A GO:0000727 ... P25205 40048517
    961298 9e2z:3 (2.6) BS03 ATP N/A GO:0000727 ... P25205 40048517
    961299 9e2z:4 (2.6) BS01 dna N/A GO:0000727 ... P33991 40048517
    961300 9e2z:4 (2.6) BS02 ATP N/A GO:0000727 ... P33991 40048517
    961301 9e2z:4 (2.6) BS03 ZN N/A GO:0000727 ... P33991 40048517
    961302 9e2z:4 (2.6) BS04 ATP N/A GO:0000727 ... P33991 40048517
    961303 9e2z:5 (2.6) BS01 dna N/A GO:0000727 ... P33992 40048517
    961304 9e2z:5 (2.6) BS02 ATP N/A GO:0000727 ... P33992 40048517
    961305 9e2z:5 (2.6) BS03 ATP N/A GO:0000727 ... P33992 40048517
    961306 9e2z:5 (2.6) BS04 ZN N/A GO:0000727 ... P33992 40048517
    961307 9e2z:6 (2.6) BS01 dna N/A GO:0000727 ... Q14566 40048517
    961308 9e2z:6 (2.6) BS02 dna N/A GO:0000727 ... Q14566 40048517
    961309 9e2z:6 (2.6) BS03 ADP N/A GO:0000727 ... Q14566 40048517
    961310 9e2z:6 (2.6) BS04 ATP N/A GO:0000727 ... Q14566 40048517
    961311 9e2z:6 (2.6) BS05 ZN N/A GO:0000727 ... Q14566 40048517
    961312 9e2z:7 (2.6) BS01 dna N/A GO:0000727 ... P33993 40048517
    961313 9e2z:7 (2.6) BS02 dna N/A GO:0000727 ... P33993 40048517
    961314 9e2z:7 (2.6) BS03 ATP N/A GO:0000727 ... P33993 40048517
    961315 9e2z:7 (2.6) BS04 ATP N/A GO:0000727 ... P33993 40048517
    961316 9e2z:7 (2.6) BS05 ZN N/A GO:0000727 ... P33993 40048517
    961317 9e30:A (1.71) BS01 A1A1O N/A GO:0006338 ... P51531 39570797
    961318 9e30:B (1.71) BS01 A1A1O N/A GO:0006338 ... P51531 39570797
    961319 9e30:C (1.71) BS01 A1A1O N/A GO:0006338 ... P51531 39570797
    961320 9e31:A (1.96) BS01 A1A1P N/A GO:0006338 ... P51531 39570797
    961321 9e31:B (1.96) BS01 A1A1P N/A GO:0006338 ... P51531 39570797
    961322 9e31:C (1.96) BS01 A1A1P N/A GO:0006338 ... P51531 39570797
    961323 9e32:A (1.53) BS01 MN N/A GO:0004611 ... A1VIE9 41099612
    961324 9e33:A (1.74) BS01 MN N/A GO:0004611 ... A1VIE9 41099612
    961325 9e33:A (1.74) BS02 PEP N/A GO:0004611 ... A1VIE9 41099612
    961326 9e34:A (1.57) BS01 MN N/A GO:0004611 ... A1VIE9 41099612
    961327 9e34:A (1.57) BS02 PEP N/A GO:0004611 ... A1VIE9 41099612
    961328 9e35:A (1.71) BS01 MN N/A GO:0004611 ... A1VIE9 41099612
    961329 9e35:A (1.71) BS02 SPV N/A GO:0004611 ... A1VIE9 41099612
    961330 9e36:A (1.8) BS01 GTP N/A GO:0004611 ... A1VIE9 41099612
    961331 9e36:A (1.8) BS02 SPV N/A GO:0004611 ... A1VIE9 41099612
    961332 9e36:A (1.8) BS03 MN N/A GO:0004611 ... A1VIE9 41099612
    961333 9e37:A (2.0) BS01 GTP N/A GO:0004611 ... A1VIE9 41099612
    961334 9e37:A (2.0) BS02 OXL N/A GO:0004611 ... A1VIE9 41099612
    961335 9e37:A (2.0) BS03 MN N/A GO:0004611 ... A1VIE9 41099612
    961336 9e38:A (1.52) BS01 MN N/A GO:0004611 ... A1VIE9 41099612
    961337 9e38:A (1.52) BS02 GDP N/A GO:0004611 ... A1VIE9 41099612
    961338 9e38:A (1.52) BS03 PGA N/A GO:0004611 ... A1VIE9 41099612
    961339 9e39:A (2.71) BS01 IHP N/A GO:0016032 ... P04591 N/A
    961340 9e39:J (2.71) BS01 IHP N/A GO:0016032 ... P04591 N/A
    961341 9e39:M (2.71) BS01 IHP N/A GO:0016032 ... P04591 N/A
    961342 9e39:P (2.71) BS01 2I4 N/A GO:0016032 ... P04591 N/A
    961343 9e39:P (2.71) BS02 IHP N/A GO:0016032 ... P04591 N/A
    961344 9e3a:J (3.36) BS01 peptide N/A GO:0000387 ... O14744 39793893
    961345 9e3b:A (3.06) BS01 peptide N/A GO:0000387 ... O14744 39793893
    961346 9e3b:A (3.06) BS02 peptide N/A GO:0000387 ... O14744 39793893
    961347 9e3b:A (3.06) BS03 SFG N/A GO:0000387 ... O14744 39793893
    961348 9e3b:C (3.06) BS01 peptide N/A GO:0000387 ... O14744 39793893
    961349 9e3b:C (3.06) BS02 peptide N/A GO:0000387 ... O14744 39793893
    961350 9e3b:C (3.06) BS03 SFG N/A GO:0000387 ... O14744 39793893
    961351 9e3b:G (3.06) BS01 peptide N/A GO:0000387 ... O14744 39793893
    961352 9e3b:G (3.06) BS02 peptide N/A GO:0000387 ... O14744 39793893
    961353 9e3b:G (3.06) BS03 SFG N/A GO:0000387 ... O14744 39793893
    961354 9e3b:J (3.06) BS01 peptide N/A GO:0000387 ... O14744 39793893
    961355 9e3b:J (3.06) BS02 peptide N/A GO:0000387 ... O14744 39793893
    961356 9e3b:J (3.06) BS03 SFG N/A GO:0000387 ... O14744 39793893
    961357 9e3c:J (3.19) BS01 peptide N/A GO:0000387 ... O14744 39793893
    961358 9e3c:J (3.19) BS02 SFG N/A GO:0000387 ... O14744 39793893
    961359 9e3d:A (3.8) BS01 dna N/A GO:0000786 ... Q71DI3 N/A
    961360 9e3d:A (3.8) BS02 dna N/A GO:0000786 ... Q71DI3 N/A
    961361 9e3d:B (3.8) BS01 dna N/A GO:0000781 ... P62805 N/A
    961362 9e3d:B (3.8) BS02 dna N/A GO:0000781 ... P62805 N/A
    961363 9e3d:C (3.8) BS01 dna N/A N/A P0C0S8 N/A
    961364 9e3d:C (3.8) BS02 dna N/A N/A P0C0S8 N/A
    961365 9e3d:D (3.8) BS01 dna N/A N/A P06899 N/A
    961366 9e3d:D (3.8) BS02 dna N/A N/A P06899 N/A
    961367 9e3d:E (3.8) BS01 dna N/A GO:0000786 ... Q71DI3 N/A
    961368 9e3d:E (3.8) BS02 dna N/A GO:0000786 ... Q71DI3 N/A
    961369 9e3d:F (3.8) BS01 dna N/A GO:0000781 ... P62805 N/A
    961370 9e3d:F (3.8) BS02 dna N/A GO:0000781 ... P62805 N/A
    961371 9e3d:G (3.8) BS01 dna N/A N/A P0C0S8 N/A
    961372 9e3d:G (3.8) BS02 dna N/A N/A P0C0S8 N/A
    961373 9e3d:H (3.8) BS01 dna N/A N/A P06899 N/A
    961374 9e3d:H (3.8) BS02 dna N/A N/A P06899 N/A
    961375 9e3d:M (3.8) BS01 dna N/A GO:0000786 ... Q71DI3 N/A
    961376 9e3d:M (3.8) BS02 dna N/A GO:0000786 ... Q71DI3 N/A
    961377 9e3d:N (3.8) BS01 dna N/A GO:0000781 ... P62805 N/A
    961378 9e3d:O (3.8) BS01 dna N/A N/A P0C0S8 N/A
    961379 9e3d:O (3.8) BS02 dna N/A N/A P0C0S8 N/A
    961380 9e3d:P (3.8) BS01 dna N/A N/A P06899 N/A
    961381 9e3d:Q (3.8) BS01 dna N/A GO:0000786 ... Q71DI3 N/A
    961382 9e3d:Q (3.8) BS02 dna N/A GO:0000786 ... Q71DI3 N/A
    961383 9e3d:R (3.8) BS01 dna N/A GO:0000781 ... P62805 N/A
    961384 9e3d:R (3.8) BS02 dna N/A GO:0000781 ... P62805 N/A
    961385 9e3d:S (3.8) BS01 dna N/A N/A P0C0S8 N/A
    961386 9e3d:S (3.8) BS02 dna N/A N/A P0C0S8 N/A
    961387 9e3d:T (3.8) BS01 dna N/A N/A P06899 N/A
    961388 9e3d:U (3.8) BS01 ZN N/A N/A Q9Y6K1 N/A
    961389 9e3d:U (3.8) BS02 ZN N/A N/A Q9Y6K1 N/A
    961390 9e3d:U (3.8) BS03 ZN N/A N/A Q9Y6K1 N/A
    961391 9e3d:U (3.8) BS04 SAH N/A N/A Q9Y6K1 N/A
    961392 9e3d:V (3.8) BS01 ZN N/A N/A Q9UBC3 N/A
    961393 9e3d:V (3.8) BS02 ZN N/A N/A Q9UBC3 N/A
    961394 9e3d:V (3.8) BS03 ZN N/A N/A Q9UBC3 N/A
    961395 9e3d:Y (3.8) BS01 ZN N/A N/A Q9Y6K1 N/A
    961396 9e3d:Y (3.8) BS02 ZN N/A N/A Q9Y6K1 N/A
    961397 9e3d:Y (3.8) BS03 ZN N/A N/A Q9Y6K1 N/A
    961398 9e3d:Y (3.8) BS04 SAH N/A N/A Q9Y6K1 N/A
    961399 9e3e:A (2.8) BS01 ACH N/A GO:0004888 ... P02710 41037590
    961400 9e3e:C (2.8) BS01 ACH N/A GO:0003008 ... P02718 41037590

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).