SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    963401 9e7y:D (4.2) BS02 dna N/A GO:0003677 ... P9WGY9 41233305
    963402 9e7y:D (4.2) BS03 ZN N/A GO:0003677 ... P9WGY9 41233305
    963403 9e7y:D (4.2) BS04 ZN N/A GO:0003677 ... P9WGY9 41233305
    963404 9e7y:D (4.2) BS05 MG N/A GO:0003677 ... P9WGY9 41233305
    963405 9e7y:F (4.2) BS01 dna N/A GO:0000976 ... P9WGI1 41233305
    963406 9e7y:F (4.2) BS02 dna N/A GO:0000976 ... P9WGI1 41233305
    963407 9e7y:M (4.2) BS01 dna N/A GO:0000794 ... P9WJG3
    Q12306
    41233305
    963408 9e7y:M (4.2) BS02 dna N/A GO:0000794 ... P9WJG3
    Q12306
    41233305
    963409 9e81:E (3.3) BS01 6LT N/A GO:0000338 ... Q92905 41673158
    963410 9e81:E (3.3) BS02 ZN N/A GO:0000338 ... Q92905 41673158
    963411 9e82:R (3.4) BS01 peptide N/A GO:0001525 ... P25106 40399676
    963412 9e83:B (2.07) BS01 VU4 N/A GO:0004252 ... O15393 40973081
    963413 9e84:C (3.6) BS01 rna N/A GO:0000345 ... P9WGY9 41233305
    963414 9e84:C (3.6) BS02 dna N/A GO:0000345 ... P9WGY9 41233305
    963415 9e84:C (3.6) BS03 POP N/A GO:0000345 ... P9WGY9 41233305
    963416 9e84:D (3.6) BS01 dna N/A GO:0000287 ... P9WGY7 41233305
    963417 9e84:D (3.6) BS02 rna N/A GO:0000287 ... P9WGY7 41233305
    963418 9e84:D (3.6) BS03 dna N/A GO:0000287 ... P9WGY7 41233305
    963419 9e84:D (3.6) BS04 ZN N/A GO:0000287 ... P9WGY7 41233305
    963420 9e84:D (3.6) BS05 ZN N/A GO:0000287 ... P9WGY7 41233305
    963421 9e84:D (3.6) BS06 MG N/A GO:0000287 ... P9WGY7 41233305
    963422 9e84:F (3.6) BS01 dna N/A GO:0000976 ... P9WGI1 41233305
    963423 9e84:F (3.6) BS02 dna N/A GO:0000976 ... P9WGI1 41233305
    963424 9e84:M (3.6) BS01 dna N/A GO:0000794 ... P9WJG3
    Q12306
    41233305
    963425 9e85:C (3.1) BS01 dna N/A GO:0000345 ... P9WGY9 41233305
    963426 9e85:C (3.1) BS02 rna N/A GO:0000345 ... P9WGY9 41233305
    963427 9e85:C (3.1) BS03 dna N/A GO:0000345 ... P9WGY9 41233305
    963428 9e85:C (3.1) BS04 POP N/A GO:0000345 ... P9WGY9 41233305
    963429 9e85:D (3.1) BS01 dna N/A GO:0000287 ... P9WGY7 41233305
    963430 9e85:D (3.1) BS02 rna N/A GO:0000287 ... P9WGY7 41233305
    963431 9e85:D (3.1) BS03 dna N/A GO:0000287 ... P9WGY7 41233305
    963432 9e85:D (3.1) BS04 ZN N/A GO:0000287 ... P9WGY7 41233305
    963433 9e85:D (3.1) BS05 ZN N/A GO:0000287 ... P9WGY7 41233305
    963434 9e85:D (3.1) BS06 MG N/A GO:0000287 ... P9WGY7 41233305
    963435 9e85:F (3.1) BS01 dna N/A GO:0000976 ... P9WGI1 41233305
    963436 9e85:F (3.1) BS02 dna N/A GO:0000976 ... P9WGI1 41233305
    963437 9e85:M (3.1) BS01 dna N/A GO:0000794 ... P9WJG3
    Q12306
    41233305
    963438 9e85:M (3.1) BS02 dna N/A GO:0000794 ... P9WJG3
    Q12306
    41233305
    963439 9e86:C (3.8) BS01 dna N/A GO:0000345 ... P9WGY9 41233305
    963440 9e86:C (3.8) BS02 POP N/A GO:0000345 ... P9WGY9 41233305
    963441 9e86:D (3.8) BS01 dna N/A GO:0000287 ... P9WGY7 41233305
    963442 9e86:D (3.8) BS02 rna N/A GO:0000287 ... P9WGY7 41233305
    963443 9e86:D (3.8) BS03 dna N/A GO:0000287 ... P9WGY7 41233305
    963444 9e86:D (3.8) BS04 ZN N/A GO:0000287 ... P9WGY7 41233305
    963445 9e86:D (3.8) BS05 ZN N/A GO:0000287 ... P9WGY7 41233305
    963446 9e86:D (3.8) BS06 MG N/A GO:0000287 ... P9WGY7 41233305
    963447 9e86:F (3.8) BS01 dna N/A GO:0000976 ... P9WGI1 41233305
    963448 9e86:F (3.8) BS02 dna N/A GO:0000976 ... P9WGI1 41233305
    963449 9e86:J (3.8) BS01 dna N/A GO:0001000 ... P9WHJ5 41233305
    963450 9e86:M (3.8) BS01 dna N/A GO:0000794 ... P9WJG3
    Q12306
    41233305
    963451 9e87:D (3.6) BS01 dna N/A GO:0000287 ... P9WGY7 41233305
    963452 9e87:D (3.6) BS02 ZN N/A GO:0000287 ... P9WGY7 41233305
    963453 9e87:D (3.6) BS03 ZN N/A GO:0000287 ... P9WGY7 41233305
    963454 9e87:D (3.6) BS04 MG N/A GO:0000287 ... P9WGY7 41233305
    963455 9e87:F (3.6) BS01 dna N/A GO:0000976 ... P9WGI1 41233305
    963456 9e87:F (3.6) BS02 dna N/A GO:0000976 ... P9WGI1 41233305
    963457 9e87:M (3.6) BS01 dna N/A GO:0000794 ... P9WJG3
    Q12306
    41233305
    963458 9e88:C (3.4) BS01 dna N/A GO:0000345 ... P9WGY9 41233305
    963459 9e88:C (3.4) BS02 rna N/A GO:0000345 ... P9WGY9 41233305
    963460 9e88:C (3.4) BS03 dna N/A GO:0000345 ... P9WGY9 41233305
    963461 9e88:D (3.4) BS01 dna N/A GO:0000287 ... P9WGY7 41233305
    963462 9e88:D (3.4) BS02 rna N/A GO:0000287 ... P9WGY7 41233305
    963463 9e88:D (3.4) BS03 dna N/A GO:0000287 ... P9WGY7 41233305
    963464 9e88:D (3.4) BS04 ZN N/A GO:0000287 ... P9WGY7 41233305
    963465 9e88:D (3.4) BS05 ZN N/A GO:0000287 ... P9WGY7 41233305
    963466 9e88:D (3.4) BS06 MG N/A GO:0000287 ... P9WGY7 41233305
    963467 9e8a:A (2.75) BS01 peptide N/A GO:0007155 ... P08514 40472320
    963468 9e8a:A (2.75) BS02 CA N/A GO:0007155 ... P08514 40472320
    963469 9e8a:A (2.75) BS03 CA N/A GO:0007155 ... P08514 40472320
    963470 9e8a:A (2.75) BS04 CA N/A GO:0007155 ... P08514 40472320
    963471 9e8a:A (2.75) BS05 CA N/A GO:0007155 ... P08514 40472320
    963472 9e8a:A (2.75) BS06 CA N/A GO:0007155 ... P08514 40472320
    963473 9e8a:B (2.75) BS01 peptide N/A N/A P05106 40472320
    963474 9e8a:B (2.75) BS02 MG N/A N/A P05106 40472320
    963475 9e8a:B (2.75) BS03 CA N/A N/A P05106 40472320
    963476 9e8a:B (2.75) BS04 CA N/A N/A P05106 40472320
    963477 9e8b:A (2.67) BS01 CA N/A GO:0007155 ... P08514 40472320
    963478 9e8b:A (2.67) BS02 CA N/A GO:0007155 ... P08514 40472320
    963479 9e8b:A (2.67) BS03 CA N/A GO:0007155 ... P08514 40472320
    963480 9e8b:A (2.67) BS04 CA N/A GO:0007155 ... P08514 40472320
    963481 9e8b:B (2.67) BS01 MG N/A N/A P05106 40472320
    963482 9e8b:B (2.67) BS02 CA N/A N/A P05106 40472320
    963483 9e8b:B (2.67) BS03 CA N/A N/A P05106 40472320
    963484 9e8c:A (3.0) BS01 CA N/A GO:0007155 ... P08514 40472320
    963485 9e8c:A (3.0) BS02 CA N/A GO:0007155 ... P08514 40472320
    963486 9e8c:A (3.0) BS03 CA N/A GO:0007155 ... P08514 40472320
    963487 9e8c:A (3.0) BS04 CA N/A GO:0007155 ... P08514 40472320
    963488 9e8c:B (3.0) BS01 MG N/A N/A P05106 40472320
    963489 9e8c:B (3.0) BS02 CA N/A N/A P05106 40472320
    963490 9e8c:B (3.0) BS03 CA N/A N/A P05106 40472320
    963491 9e8c:C (3.0) BS01 CA N/A GO:0007155 ... P08514 40472320
    963492 9e8c:C (3.0) BS02 CA N/A GO:0007155 ... P08514 40472320
    963493 9e8c:C (3.0) BS03 CA N/A GO:0007155 ... P08514 40472320
    963494 9e8c:C (3.0) BS04 CA N/A GO:0007155 ... P08514 40472320
    963495 9e8c:D (3.0) BS01 MG N/A N/A P05106 40472320
    963496 9e8c:D (3.0) BS02 CA N/A N/A P05106 40472320
    963497 9e8c:D (3.0) BS03 CA N/A N/A P05106 40472320
    963498 9e8g:A (3.01) BS01 ATP N/A GO:0000502 ... P35998 41198955
    963499 9e8g:A (3.01) BS02 ATP N/A GO:0000502 ... P35998 41198955
    963500 9e8g:B (3.01) BS01 peptide N/A GO:0000502 ... P62191 41198955
    963501 9e8g:B (3.01) BS02 ATP N/A GO:0000502 ... P62191 41198955
    963502 9e8g:B (3.01) BS03 MG N/A GO:0000502 ... P62191 41198955
    963503 9e8g:C (3.01) BS01 ATP N/A GO:0000502 ... P62195 41198955
    963504 9e8g:C (3.01) BS02 ADP N/A GO:0000502 ... P62195 41198955
    963505 9e8g:D (3.01) BS01 peptide N/A GO:0000502 ... P43686 41198955
    963506 9e8g:D (3.01) BS02 ADP N/A GO:0000502 ... P43686 41198955
    963507 9e8g:D (3.01) BS03 ADP N/A GO:0000502 ... P43686 41198955
    963508 9e8g:E (3.01) BS01 ADP N/A GO:0000502 ... P62333 41198955
    963509 9e8g:F (3.01) BS01 ATP N/A GO:0000502 ... P17980 41198955
    963510 9e8g:F (3.01) BS02 MG N/A GO:0000502 ... P17980 41198955
    963511 9e8g:c (3.01) BS01 ZN N/A GO:0000502 ... O00487 41198955
    963512 9e8h:A (2.9) BS01 ATP N/A GO:0000502 ... P35998 41198955
    963513 9e8h:A (2.9) BS02 ATP N/A GO:0000502 ... P35998 41198955
    963514 9e8h:B (2.9) BS01 ATP N/A GO:0000502 ... P62191 41198955
    963515 9e8h:B (2.9) BS02 ATP N/A GO:0000502 ... P62191 41198955
    963516 9e8h:C (2.9) BS01 ADP N/A GO:0000502 ... P62195 41198955
    963517 9e8h:D (2.9) BS01 ATP N/A GO:0000502 ... P43686 41198955
    963518 9e8h:E (2.9) BS01 ATP N/A GO:0000502 ... P62333 41198955
    963519 9e8h:E (2.9) BS02 ATP N/A GO:0000502 ... P62333 41198955
    963520 9e8h:F (2.9) BS01 ATP N/A GO:0000502 ... P17980 41198955
    963521 9e8h:F (2.9) BS02 ATP N/A GO:0000502 ... P17980 41198955
    963522 9e8h:F (2.9) BS03 MG N/A GO:0000502 ... P17980 41198955
    963523 9e8h:c (2.9) BS01 ZN N/A GO:0000502 ... O00487 41198955
    963524 9e8i:A (2.87) BS01 ATP N/A GO:0000502 ... P35998 41198955
    963525 9e8i:A (2.87) BS02 MG N/A GO:0000502 ... P35998 41198955
    963526 9e8i:A (2.87) BS03 ATP N/A GO:0000502 ... P35998 41198955
    963527 9e8i:B (2.87) BS01 ATP N/A GO:0000502 ... P62191 41198955
    963528 9e8i:B (2.87) BS02 ATP N/A GO:0000502 ... P62191 41198955
    963529 9e8i:B (2.87) BS03 MG N/A GO:0000502 ... P62191 41198955
    963530 9e8i:C (2.87) BS01 ADP N/A GO:0000502 ... P62195 41198955
    963531 9e8i:D (2.87) BS01 ATP N/A GO:0000502 ... P43686 41198955
    963532 9e8i:E (2.87) BS01 ATP N/A GO:0000502 ... P62333 41198955
    963533 9e8i:E (2.87) BS02 ATP N/A GO:0000502 ... P62333 41198955
    963534 9e8i:F (2.87) BS01 ATP N/A GO:0000502 ... P17980 41198955
    963535 9e8i:F (2.87) BS02 ATP N/A GO:0000502 ... P17980 41198955
    963536 9e8i:F (2.87) BS03 MG N/A GO:0000502 ... P17980 41198955
    963537 9e8i:c (2.87) BS01 ZN N/A GO:0000502 ... O00487 41198955
    963538 9e8j:A (3.47) BS01 ATP N/A GO:0000502 ... P35998 41198955
    963539 9e8j:A (3.47) BS02 MG N/A GO:0000502 ... P35998 41198955
    963540 9e8j:B (3.47) BS01 peptide N/A GO:0000502 ... P62191 41198955
    963541 9e8j:B (3.47) BS02 ATP N/A GO:0000502 ... P62191 41198955
    963542 9e8j:B (3.47) BS03 ATP N/A GO:0000502 ... P62191 41198955
    963543 9e8j:B (3.47) BS04 MG N/A GO:0000502 ... P62191 41198955
    963544 9e8j:C (3.47) BS01 peptide N/A GO:0000502 ... P62195 41198955
    963545 9e8j:C (3.47) BS02 ATP N/A GO:0000502 ... P62195 41198955
    963546 9e8j:C (3.47) BS03 MG N/A GO:0000502 ... P62195 41198955
    963547 9e8j:D (3.47) BS01 ATP N/A GO:0000502 ... P43686 41198955
    963548 9e8j:D (3.47) BS02 ADP N/A GO:0000502 ... P43686 41198955
    963549 9e8j:E (3.47) BS01 peptide N/A GO:0000502 ... P62333 41198955
    963550 9e8j:E (3.47) BS02 ADP N/A GO:0000502 ... P62333 41198955
    963551 9e8j:F (3.47) BS01 ATP N/A GO:0000502 ... P17980 41198955
    963552 9e8j:F (3.47) BS02 MG N/A GO:0000502 ... P17980 41198955
    963553 9e8j:c (3.47) BS01 ZN N/A GO:0000502 ... O00487 41198955
    963554 9e8k:A (4.08) BS01 ADP N/A GO:0000502 ... P35998 41198955
    963555 9e8k:B (4.08) BS01 ADP N/A GO:0000502 ... P62191 41198955
    963556 9e8k:C (4.08) BS01 ATP N/A GO:0000502 ... P62195 41198955
    963557 9e8k:D (4.08) BS01 peptide N/A GO:0000502 ... P43686 41198955
    963558 9e8k:D (4.08) BS02 ATP N/A GO:0000502 ... P43686 41198955
    963559 9e8k:D (4.08) BS03 ATP N/A GO:0000502 ... P43686 41198955
    963560 9e8k:E (4.08) BS01 peptide N/A GO:0000502 ... P62333 41198955
    963561 9e8k:E (4.08) BS02 ATP N/A GO:0000502 ... P62333 41198955
    963562 9e8k:E (4.08) BS03 ATP N/A GO:0000502 ... P62333 41198955
    963563 9e8k:F (4.08) BS01 peptide N/A GO:0000502 ... P17980 41198955
    963564 9e8k:F (4.08) BS02 ATP N/A GO:0000502 ... P17980 41198955
    963565 9e8k:F (4.08) BS03 ADP N/A GO:0000502 ... P17980 41198955
    963566 9e8k:c (4.08) BS01 ZN N/A GO:0000502 ... O00487 41198955
    963567 9e8l:A (3.59) BS01 peptide N/A GO:0000502 ... P35998 41198955
    963568 9e8l:A (3.59) BS02 ADP N/A GO:0000502 ... P35998 41198955
    963569 9e8l:A (3.59) BS03 ATP N/A GO:0000502 ... P35998 41198955
    963570 9e8l:B (3.59) BS01 ADP N/A GO:0000502 ... P62191 41198955
    963571 9e8l:C (3.59) BS01 ADP N/A GO:0000502 ... P62195 41198955
    963572 9e8l:D (3.59) BS01 ADP N/A GO:0000502 ... P43686 41198955
    963573 9e8l:E (3.59) BS01 peptide N/A GO:0000502 ... P62333 41198955
    963574 9e8l:E (3.59) BS02 ATP N/A GO:0000502 ... P62333 41198955
    963575 9e8l:E (3.59) BS03 MG N/A GO:0000502 ... P62333 41198955
    963576 9e8l:F (3.59) BS01 peptide N/A GO:0000502 ... P17980 41198955
    963577 9e8l:F (3.59) BS02 ATP N/A GO:0000502 ... P17980 41198955
    963578 9e8l:F (3.59) BS03 ATP N/A GO:0000502 ... P17980 41198955
    963579 9e8l:F (3.59) BS04 MG N/A GO:0000502 ... P17980 41198955
    963580 9e8l:c (3.59) BS01 ZN N/A GO:0000502 ... O00487 41198955
    963581 9e8m:A (2.827) BS01 A1BF9 N/A N/A P42336 41066541
    963582 9e8m:B (2.827) BS01 A1BF9 N/A N/A P42336 41066541
    963583 9e8n:A (3.62) BS01 peptide N/A GO:0000502 ... P35998 41198955
    963584 9e8n:A (3.62) BS02 ADP N/A GO:0000502 ... P35998 41198955
    963585 9e8n:A (3.62) BS03 ATP N/A GO:0000502 ... P35998 41198955
    963586 9e8n:B (3.62) BS01 peptide N/A GO:0000502 ... P62191 41198955
    963587 9e8n:B (3.62) BS02 ADP N/A GO:0000502 ... P62191 41198955
    963588 9e8n:C (3.62) BS01 ADP N/A GO:0000502 ... P62195 41198955
    963589 9e8n:D (3.62) BS01 ADP N/A GO:0000502 ... P43686 41198955
    963590 9e8n:E (3.62) BS01 peptide N/A GO:0000502 ... P62333 41198955
    963591 9e8n:E (3.62) BS02 ATP N/A GO:0000502 ... P62333 41198955
    963592 9e8n:E (3.62) BS03 MG N/A GO:0000502 ... P62333 41198955
    963593 9e8n:F (3.62) BS01 ATP N/A GO:0000502 ... P17980 41198955
    963594 9e8n:F (3.62) BS02 MG N/A GO:0000502 ... P17980 41198955
    963595 9e8n:c (3.62) BS01 ZN N/A GO:0000502 ... O00487 41198955
    963596 9e8o:A (3.1) BS01 ADP N/A GO:0000502 ... P35998 41198955
    963597 9e8o:B (3.1) BS01 ATP N/A GO:0000502 ... P62191 41198955
    963598 9e8o:C (3.1) BS01 ATP N/A GO:0000502 ... P62195 41198955
    963599 9e8o:C (3.1) BS02 ATP N/A GO:0000502 ... P62195 41198955
    963600 9e8o:D (3.1) BS01 ATP N/A GO:0000502 ... P43686 41198955

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).