SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    963801 9e9s:D (2.68) BS01 PG2 N/A GO:0001785 ... Q13258 41062467
    963802 9e9s:D (2.68) BS02 Y01 N/A GO:0001785 ... Q13258 41062467
    963803 9e9v:A (4.0) BS01 rna N/A N/A B7T0U6 40593686
    963804 9e9v:A (4.0) BS02 ZN N/A N/A B7T0U6 40593686
    963805 9e9v:E (4.0) BS01 rna N/A N/A B7T0U6 40593686
    963806 9e9v:E (4.0) BS02 rna N/A N/A B7T0U6 40593686
    963807 9e9w:A (1.48) BS01 7YY N/A N/A P0DTD1 N/A
    963808 9e9w:B (1.48) BS01 7YY N/A N/A P0DTD1 N/A
    963809 9e9y:V (3.96) BS01 CA N/A N/A P98155 40187344
    963810 9e9y:V (3.96) BS02 CA N/A N/A P98155 40187344
    963811 9e9y:X (3.96) BS01 CA N/A N/A P98155 40187344
    963812 9e9y:X (3.96) BS02 CA N/A N/A P98155 40187344
    963813 9e9y:Y (3.96) BS01 CA N/A N/A P98155 40187344
    963814 9e9y:Y (3.96) BS02 CA N/A N/A P98155 40187344
    963815 9e9y:Z (3.96) BS01 CA N/A N/A P98155 40187344
    963816 9e9y:Z (3.96) BS02 CA N/A N/A P98155 40187344
    963817 9e9z:V (3.95) BS01 CA N/A N/A P98155 40187344
    963818 9e9z:V (3.95) BS02 CA N/A N/A P98155 40187344
    963819 9e9z:W (3.95) BS01 CA N/A N/A P98155 40187344
    963820 9e9z:W (3.95) BS02 CA N/A N/A P98155 40187344
    963821 9e9z:X (3.95) BS01 CA N/A N/A P98155 40187344
    963822 9e9z:X (3.95) BS02 CA N/A N/A P98155 40187344
    963823 9e9z:Y (3.95) BS01 CA N/A N/A P98155 40187344
    963824 9e9z:Y (3.95) BS02 CA N/A N/A P98155 40187344
    963825 9ea0:A (2.0) BS01 MAN N/A GO:0016020 ... A3EXD0 39922192
    963826 9ea0:A (2.0) BS02 MAN N/A GO:0016020 ... A3EXD0 39922192
    963827 9ea0:A (2.0) BS03 ZN N/A GO:0016020 ... A3EXD0 39922192
    963828 9ea0:A (2.0) BS04 ZN N/A GO:0016020 ... A3EXD0 39922192
    963829 9ea0:A (2.0) BS05 EIC N/A GO:0016020 ... A3EXD0 39922192
    963830 9ea0:A (2.0) BS06 EIC N/A GO:0016020 ... A3EXD0 39922192
    963831 9ea0:B (2.0) BS01 MAN N/A GO:0016020 ... A3EXD0 39922192
    963832 9ea0:B (2.0) BS02 MAN N/A GO:0016020 ... A3EXD0 39922192
    963833 9ea0:B (2.0) BS03 EIC N/A GO:0016020 ... A3EXD0 39922192
    963834 9ea0:B (2.0) BS04 ZN N/A GO:0016020 ... A3EXD0 39922192
    963835 9ea0:B (2.0) BS05 ZN N/A GO:0016020 ... A3EXD0 39922192
    963836 9ea0:B (2.0) BS06 EIC N/A GO:0016020 ... A3EXD0 39922192
    963837 9ea0:C (2.0) BS01 MAN N/A GO:0016020 ... A3EXD0 39922192
    963838 9ea0:C (2.0) BS02 MAN N/A GO:0016020 ... A3EXD0 39922192
    963839 9ea0:C (2.0) BS03 EIC N/A GO:0016020 ... A3EXD0 39922192
    963840 9ea0:C (2.0) BS04 EIC N/A GO:0016020 ... A3EXD0 39922192
    963841 9ea0:C (2.0) BS05 ZN N/A GO:0016020 ... A3EXD0 39922192
    963842 9ea0:C (2.0) BS06 ZN N/A GO:0016020 ... A3EXD0 39922192
    963843 9ea1:A (2.29) BS01 HEM N/A GO:0019441 ... N/A 39725034
    963844 9ea1:A (2.29) BS02 CTE N/A GO:0019441 ... N/A 39725034
    963845 9ea1:B (2.29) BS01 HEM N/A GO:0019441 ... N/A 39725034
    963846 9ea1:B (2.29) BS02 CTE N/A GO:0019441 ... N/A 39725034
    963847 9ea2:A (3.7) BS01 dna N/A GO:0000166 ... A0A7S9SVB6 41459747
    963848 9ea3:A (3.99) BS01 dna N/A GO:0000166 ... A0A7S9SVB6 41459747
    963849 9ea3:A (3.99) BS02 dna N/A GO:0000166 ... A0A7S9SVB6 41459747
    963850 9ea4:A (1.8) BS01 ZN N/A GO:0008641 ... N/A 41184514
    963851 9ea6:A (3.74) BS01 dna N/A GO:0000166 ... A0A7S9SVB6 41459747
    963852 9ea6:A (3.74) BS02 dna N/A GO:0000166 ... A0A7S9SVB6 41459747
    963853 9ea6:A (3.74) BS03 D3T N/A GO:0000166 ... A0A7S9SVB6 41459747
    963854 9ea6:C (3.74) BS01 dna N/A GO:0000166 ... A0A7S9SVB6 41459747
    963855 9ea6:E (3.74) BS01 dna N/A GO:0006260 ... P04525 41459747
    963856 9ea9:A (2.93) BS01 ZN N/A GO:0004222 ... P0DPI0 40864694
    963857 9eaf:A (1.41) BS01 peptide N/A GO:0003824 ... A7VSG2 39887002
    963858 9eaf:B (1.41) BS01 peptide N/A GO:0003824 ... A7VSG2 39887002
    963859 9eah:A (3.1) BS01 OLM N/A GO:0004930 ... P30556 40067891
    963860 9eah:A (3.1) BS02 CLR N/A GO:0004930 ... P30556 40067891
    963861 9eai:A (3.1) BS01 LSN N/A GO:0004930 ... P30556 40067891
    963862 9eai:A (3.1) BS02 Y01 N/A GO:0004930 ... P30556 40067891
    963863 9eai:A (3.1) BS03 Y01 N/A GO:0004930 ... P30556 40067891
    963864 9eai:B (3.1) BS01 LSN N/A GO:0004930 ... P30556 40067891
    963865 9eak:A (2.76) BS01 rna N/A GO:0003676 ... Q99ZW2 40593576
    963866 9eak:A (2.76) BS02 dna N/A GO:0003676 ... Q99ZW2 40593576
    963867 9eak:A (2.76) BS03 dna N/A GO:0003676 ... Q99ZW2 40593576
    963868 9eal:A (2.83) BS01 rna N/A GO:0003676 ... Q99ZW2 40593576
    963869 9eal:A (2.83) BS02 dna N/A GO:0003676 ... Q99ZW2 40593576
    963870 9eal:A (2.83) BS03 dna N/A GO:0003676 ... Q99ZW2 40593576
    963871 9eam:A (2.97) BS01 ATP N/A GO:0005200 ... P61157 N/A
    963872 9eam:B (2.97) BS01 ATP N/A GO:0005200 ... A7MB62 N/A
    963873 9eao:A (2.6) BS01 CA N/A GO:0030430 ... Q80J94 40353669
    963874 9eao:B (2.6) BS01 CA N/A GO:0030430 ... Q80J94 40353669
    963875 9eap:A (2.7) BS01 CHO N/A GO:0030430 ... Q80J94 40353669
    963876 9eap:C (2.7) BS01 CHO N/A GO:0030430 ... Q80J94 40353669
    963877 9ear:A (3.1) BS01 dna N/A GO:0000786 ... A0A310TTQ1 40334658
    963878 9ear:A (3.1) BS02 dna N/A GO:0000786 ... A0A310TTQ1 40334658
    963879 9ear:B (3.1) BS01 dna N/A GO:0003677 ... P62799 40334658
    963880 9ear:B (3.1) BS02 dna N/A GO:0003677 ... P62799 40334658
    963881 9ear:C (3.1) BS01 dna N/A GO:0000786 ... Q6AZJ8 40334658
    963882 9ear:C (3.1) BS02 dna N/A GO:0000786 ... Q6AZJ8 40334658
    963883 9ear:D (3.1) BS01 dna N/A GO:0000786 ... A0A1L8FQA5 40334658
    963884 9ear:D (3.1) BS02 dna N/A GO:0000786 ... A0A1L8FQA5 40334658
    963885 9ear:E (3.1) BS01 dna N/A GO:0000786 ... A0A310TTQ1 40334658
    963886 9ear:E (3.1) BS02 dna N/A GO:0000786 ... A0A310TTQ1 40334658
    963887 9ear:F (3.1) BS01 dna N/A GO:0003677 ... P62799 40334658
    963888 9ear:F (3.1) BS02 dna N/A GO:0003677 ... P62799 40334658
    963889 9ear:G (3.1) BS01 dna N/A GO:0000786 ... Q6AZJ8 40334658
    963890 9ear:G (3.1) BS02 dna N/A GO:0000786 ... Q6AZJ8 40334658
    963891 9ear:H (3.1) BS01 dna N/A GO:0000786 ... A0A1L8FQA5 40334658
    963892 9ear:H (3.1) BS02 dna N/A GO:0000786 ... A0A1L8FQA5 40334658
    963893 9ear:W (3.1) BS01 dna N/A GO:0005524 ... O14646 40334658
    963894 9ear:W (3.1) BS02 dna N/A GO:0005524 ... O14646 40334658
    963895 9ear:W (3.1) BS03 ADP N/A GO:0005524 ... O14646 40334658
    963896 9ear:W (3.1) BS04 BEF N/A GO:0005524 ... O14646 40334658
    963897 9eat:A (1.43) BS01 ZN N/A GO:0004089 ... P61517 39812168
    963898 9eau:Y (3.06) BS01 CA N/A N/A P98155 40187344
    963899 9eau:Z (3.06) BS01 CA N/A N/A P98155 40187344
    963900 9eav:B (1.93) BS01 AMP N/A GO:0008641 ... N/A 41184514
    963901 9eaw:A (2.26) BS01 ZN N/A GO:0004089 ... P61517 39812168
    963902 9eaw:B (2.26) BS01 ZN N/A GO:0004089 ... P61517 39812168
    963903 9eb2:A (2.0) BS01 BJU N/A N/A Q9BCW3 40412526
    963904 9eb3:A (2.3) BS01 BJU N/A N/A Q9BCW3 40412526
    963905 9eb4:A (2.2) BS01 140 N/A N/A Q9BCW3 40412526
    963906 9eb5:A (2.08) BS01 peptide N/A N/A Q9BCW3 40412526
    963907 9eb6:A (1.9) BS01 peptide N/A N/A Q9BCW3 40412526
    963908 9eb7:A (1.75) BS01 CA N/A GO:0000166 ... A0A2U8JGP4 N/A
    963909 9eb7:B (1.75) BS01 CA N/A GO:0000166 ... A0A2U8JGP4 N/A
    963910 9eb8:A (1.9) BS01 MG N/A GO:0000166 ... A0A2U8JGP4 N/A
    963911 9eb8:A (1.9) BS02 ADP N/A GO:0000166 ... A0A2U8JGP4 N/A
    963912 9eb8:B (1.9) BS01 MG N/A GO:0000166 ... A0A2U8JGP4 N/A
    963913 9eb8:B (1.9) BS02 ADP N/A GO:0000166 ... A0A2U8JGP4 N/A
    963914 9eb8:C (1.9) BS01 MG N/A GO:0000166 ... A0A2U8JGP4 N/A
    963915 9eb8:C (1.9) BS02 ADP N/A GO:0000166 ... A0A2U8JGP4 N/A
    963916 9eba:A (3.1) BS01 EUJ N/A GO:0001891 ... Q9GZU1 N/A
    963917 9eba:B (3.1) BS01 EUJ N/A GO:0001891 ... Q9GZU1 N/A
    963918 9eba:C (3.1) BS01 EUJ N/A GO:0001891 ... Q9GZU1 N/A
    963919 9eba:D (3.1) BS01 EUJ N/A GO:0001891 ... Q9GZU1 N/A
    963920 9ebf:A (2.5) BS01 XPU N/A GO:0016020 ... Q2FDS6 N/A
    963921 9ebf:A (2.5) BS02 XPU N/A GO:0016020 ... Q2FDS6 N/A
    963922 9ebf:B (2.5) BS01 XPU N/A GO:0016020 ... Q2FDS6 N/A
    963923 9ebf:B (2.5) BS02 XPU N/A GO:0016020 ... Q2FDS6 N/A
    963924 9ebf:C (2.5) BS01 XPU N/A GO:0016020 ... Q2FDS6 N/A
    963925 9ebf:C (2.5) BS02 XPU N/A GO:0016020 ... Q2FDS6 N/A
    963926 9ebf:D (2.5) BS01 XPU N/A GO:0016020 ... Q2FDS6 N/A
    963927 9ebf:D (2.5) BS02 XPU N/A GO:0016020 ... Q2FDS6 N/A
    963928 9ebg:A (2.02) BS01 peptide N/A N/A P03372 N/A
    963929 9ebg:A (2.02) BS02 B81 N/A N/A P03372 N/A
    963930 9ebg:C (2.02) BS01 peptide N/A N/A P03372 N/A
    963931 9ebg:C (2.02) BS02 B81 N/A N/A P03372 N/A
    963932 9ebh:R (3.6) BS01 ADN N/A GO:0001609 ... P0DMS8 40825947
    963933 9ebi:R (3.6) BS01 Q8L N/A GO:0001609 ... P0DMS8 40825947
    963934 9ebk:A (2.08007) BS01 HEM N/A N/A A0ACD6BA03 N/A
    963935 9ebk:A (2.08007) BS02 HEM N/A N/A A0ACD6BA03 N/A
    963936 9ebk:B (2.08007) BS01 HEM N/A N/A A0ACD6BA03 N/A
    963937 9ebk:B (2.08007) BS02 HEM N/A N/A A0ACD6BA03 N/A
    963938 9ebl:A (2.2) BS01 peptide N/A N/A Q92731 N/A
    963939 9ebl:A (2.2) BS02 B81 N/A N/A Q92731 N/A
    963940 9ebl:B (2.2) BS01 peptide N/A N/A Q92731 N/A
    963941 9ebl:B (2.2) BS02 B81 N/A N/A Q92731 N/A
    963942 9ebl:E (2.2) BS01 peptide N/A N/A Q92731 N/A
    963943 9ebl:E (2.2) BS02 B81 N/A N/A Q92731 N/A
    963944 9ebl:F (2.2) BS01 peptide N/A N/A Q92731 N/A
    963945 9ebl:F (2.2) BS02 B81 N/A N/A Q92731 N/A
    963946 9ebm:A (1.92) BS01 HEM N/A N/A A0ACD6BA03 N/A
    963947 9ebm:B (1.92) BS01 HEM N/A N/A A0ACD6BA03 N/A
    963948 9ebo:R (3.13) BS01 peptide N/A GO:0004888 ... P43220 40168114
    963949 9ebr:A (2.3) BS01 FE2 N/A GO:0036094 ... Q9X1T8 39899144
    963950 9ebr:A (2.3) BS02 NIO N/A GO:0036094 ... Q9X1T8 39899144
    963951 9ebs:E (3.3) BS01 A1A4Y N/A GO:0004197 ... O94782 39886906
    963952 9ebs:E (3.3) BS02 ZN N/A GO:0004197 ... O94782 39886906
    963953 9ebs:E (3.3) BS03 A1BHF N/A GO:0004197 ... O94782 39886906
    963954 9ebt:A (2.36) BS01 rna N/A GO:0004000 ... A0A062XY19 41107544
    963955 9ebt:A (2.36) BS02 rna N/A GO:0004000 ... A0A062XY19 41107544
    963956 9ebt:A (2.36) BS03 ZN N/A GO:0004000 ... A0A062XY19 41107544
    963957 9ebt:B (2.36) BS01 rna N/A GO:0004000 ... A0A062XY19 41107544
    963958 9ebt:B (2.36) BS02 rna N/A GO:0004000 ... A0A062XY19 41107544
    963959 9ebt:B (2.36) BS03 ZN N/A GO:0004000 ... A0A062XY19 41107544
    963960 9ebu:A (3.06) BS01 rna N/A N/A B0MS50 N/A
    963961 9eby:A (2.03) BS01 peptide N/A GO:0004497 ... A0A224AU14 40568218
    963962 9eby:A (2.03) BS02 HEM N/A GO:0004497 ... A0A224AU14 40568218
    963963 9ebz:A (2.66) BS01 ZN N/A GO:0004089 ... P61517 39812168
    963964 9ebz:B (2.66) BS01 ZN N/A GO:0004089 ... P61517 39812168
    963965 9ebz:C (2.66) BS01 ZN N/A GO:0004089 ... P61517 39812168
    963966 9ebz:D (2.66) BS01 ZN N/A GO:0004089 ... P61517 39812168
    963967 9ec2:A (2.72) BS01 A1BHL N/A N/A Q9Y3Z3 39989431
    963968 9ec2:A (2.72) BS02 FE N/A N/A Q9Y3Z3 39989431
    963969 9ec2:A (2.72) BS03 A1BHL N/A N/A Q9Y3Z3 39989431
    963970 9ec2:B (2.72) BS01 A1BHL N/A N/A Q9Y3Z3 39989431
    963971 9ec2:B (2.72) BS02 A1BHL N/A N/A Q9Y3Z3 39989431
    963972 9ec2:B (2.72) BS03 FE N/A N/A Q9Y3Z3 39989431
    963973 9ec2:C (2.72) BS01 A1BHL N/A N/A Q9Y3Z3 39989431
    963974 9ec2:C (2.72) BS02 A1BHL N/A N/A Q9Y3Z3 39989431
    963975 9ec2:C (2.72) BS03 FE N/A N/A Q9Y3Z3 39989431
    963976 9ec2:D (2.72) BS01 A1BHL N/A N/A Q9Y3Z3 39989431
    963977 9ec2:D (2.72) BS02 A1BHL N/A N/A Q9Y3Z3 39989431
    963978 9ec2:D (2.72) BS03 FE N/A N/A Q9Y3Z3 39989431
    963979 9ec5:A (1.4) BS01 A1BIA N/A GO:0005576 ... P22629 N/A
    963980 9ec8:A (3.07) BS01 rna N/A N/A B0MS50 39103341
    963981 9ec8:A (3.07) BS02 rna N/A N/A B0MS50 39103341
    963982 9ec8:A (3.07) BS03 MG N/A N/A B0MS50 39103341
    963983 9ec9:A (3.26) BS01 rna N/A N/A B0MS50 N/A
    963984 9ec9:A (3.26) BS02 rna N/A N/A B0MS50 N/A
    963985 9eca:A (3.19) BS01 rna N/A N/A B0MS50 N/A
    963986 9eca:A (3.19) BS02 MG N/A N/A B0MS50 N/A
    963987 9eca:A (3.19) BS03 MG N/A N/A B0MS50 N/A
    963988 9ecb:A (3.15) BS01 rna N/A N/A B0MS50 N/A
    963989 9ecb:A (3.15) BS02 rna N/A N/A B0MS50 N/A
    963990 9ecc:A (3.32) BS01 rna N/A N/A B0MS50 N/A
    963991 9ecc:A (3.32) BS02 rna N/A N/A B0MS50 N/A
    963992 9ecd:A (3.47) BS01 rna N/A N/A B0MS50 N/A
    963993 9ecd:A (3.47) BS02 rna N/A N/A B0MS50 N/A
    963994 9ece:A (3.01) BS01 rna N/A N/A B0MS50 N/A
    963995 9ece:A (3.01) BS02 rna N/A N/A B0MS50 N/A
    963996 9ecf:A (2.0) BS01 peptide N/A N/A Q92731 N/A
    963997 9ecf:A (2.0) BS02 B81 N/A N/A Q92731 N/A
    963998 9ecf:B (2.0) BS01 peptide N/A N/A Q92731 N/A
    963999 9ecf:B (2.0) BS02 B81 N/A N/A Q92731 N/A
    964000 9ecf:E (2.0) BS01 peptide N/A N/A Q92731 N/A

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).