SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    964001 9ecf:E (2.0) BS02 B81 N/A N/A Q92731 N/A
    964002 9ecf:F (2.0) BS01 peptide N/A N/A Q92731 N/A
    964003 9ecf:F (2.0) BS02 B81 N/A N/A Q92731 N/A
    964004 9ecf:I (2.0) BS01 peptide N/A N/A Q92731 N/A
    964005 9ecf:I (2.0) BS02 B81 N/A N/A Q92731 N/A
    964006 9ecf:J (2.0) BS01 peptide N/A N/A Q92731 N/A
    964007 9ecf:J (2.0) BS02 B81 N/A N/A Q92731 N/A
    964008 9ecf:M (2.0) BS01 peptide N/A N/A Q92731 N/A
    964009 9ecf:M (2.0) BS02 B81 N/A N/A Q92731 N/A
    964010 9ecf:N (2.0) BS01 peptide N/A N/A Q92731 N/A
    964011 9ecf:N (2.0) BS02 B81 N/A N/A Q92731 N/A
    964012 9ecg:A (2.092) BS01 A1BHG N/A GO:0004594 ... Q9H999 N/A
    964013 9ecg:A (2.092) BS02 ANP N/A GO:0004594 ... Q9H999 N/A
    964014 9ech:A (2.043) BS01 A1BHH N/A GO:0004594 ... Q9H999 N/A
    964015 9ech:A (2.043) BS02 ANP N/A GO:0004594 ... Q9H999 N/A
    964016 9ecj:B (2.9) BS01 A1BIG N/A GO:0004930 ... Q86VZ1 N/A
    964017 9ecn:A (2.0) BS01 F43 N/A GO:0005737 ... Q8THH1 39772843
    964018 9ecn:A (2.0) BS02 F43 N/A GO:0005737 ... Q8THH1 39772843
    964019 9ecn:A (2.0) BS03 TP7 N/A GO:0005737 ... Q8THH1 39772843
    964020 9ecn:A (2.0) BS04 SHT N/A GO:0005737 ... Q8THH1 39772843
    964021 9ecn:B (2.0) BS01 F43 N/A GO:0005737 ... Q8THH1 39772843
    964022 9ecn:B (2.0) BS02 F43 N/A GO:0005737 ... Q8THH1 39772843
    964023 9ecn:B (2.0) BS03 TP7 N/A GO:0005737 ... Q8THH1 39772843
    964024 9ecn:B (2.0) BS04 SHT N/A GO:0005737 ... Q8THH1 39772843
    964025 9ecn:C (2.0) BS01 TP7 N/A GO:0015948 ... Q8THG7 39772843
    964026 9ecn:D (2.0) BS01 SHT N/A GO:0015948 ... Q8THG7 39772843
    964027 9ecn:E (2.0) BS01 F43 N/A GO:0015948 ... Q8THH0 39772843
    964028 9ecn:F (2.0) BS01 F43 N/A GO:0015948 ... Q8THH0 39772843
    964029 9eco:A (2.83) BS01 dna N/A GO:0003677 ... P0ACB0 N/A
    964030 9eco:A (2.83) BS02 ALF N/A GO:0003677 ... P0ACB0 N/A
    964031 9eco:B (2.83) BS01 dna N/A GO:0003677 ... P0ACB0 N/A
    964032 9eco:B (2.83) BS02 ADP N/A GO:0003677 ... P0ACB0 N/A
    964033 9eco:B (2.83) BS03 ADP N/A GO:0003677 ... P0ACB0 N/A
    964034 9eco:B (2.83) BS04 ALF N/A GO:0003677 ... P0ACB0 N/A
    964035 9eco:C (2.83) BS01 dna N/A GO:0003677 ... P0ACB0 N/A
    964036 9eco:C (2.83) BS02 ADP N/A GO:0003677 ... P0ACB0 N/A
    964037 9eco:C (2.83) BS03 ALF N/A GO:0003677 ... P0ACB0 N/A
    964038 9eco:C (2.83) BS04 ADP N/A GO:0003677 ... P0ACB0 N/A
    964039 9eco:D (2.83) BS01 dna N/A GO:0003677 ... P0ACB0 N/A
    964040 9eco:D (2.83) BS02 ADP N/A GO:0003677 ... P0ACB0 N/A
    964041 9eco:D (2.83) BS03 ADP N/A GO:0003677 ... P0ACB0 N/A
    964042 9eco:E (2.83) BS01 dna N/A GO:0003677 ... P0ACB0 N/A
    964043 9eco:E (2.83) BS02 ADP N/A GO:0003677 ... P0ACB0 N/A
    964044 9eco:E (2.83) BS03 ALF N/A GO:0003677 ... P0ACB0 N/A
    964045 9eco:E (2.83) BS04 ALF N/A GO:0003677 ... P0ACB0 N/A
    964046 9eco:F (2.83) BS01 dna N/A GO:0003677 ... P0ACB0 N/A
    964047 9eco:F (2.83) BS02 ADP N/A GO:0003677 ... P0ACB0 N/A
    964048 9ecp:A (1.91) BS01 dna N/A GO:0000786 ... P68431 N/A
    964049 9ecp:A (1.91) BS02 dna N/A GO:0000786 ... P68431 N/A
    964050 9ecp:B (1.91) BS01 dna N/A GO:0003677 ... P62805 N/A
    964051 9ecp:B (1.91) BS02 dna N/A GO:0003677 ... P62805 N/A
    964052 9ecp:C (1.91) BS01 dna N/A GO:0000786 ... Q7L7L0 N/A
    964053 9ecp:C (1.91) BS02 dna N/A GO:0000786 ... Q7L7L0 N/A
    964054 9ecp:D (1.91) BS01 dna N/A GO:0000786 ... O60814 N/A
    964055 9ecp:D (1.91) BS02 dna N/A GO:0000786 ... O60814 N/A
    964056 9ecp:E (1.91) BS01 dna N/A GO:0000786 ... P68431 N/A
    964057 9ecp:E (1.91) BS02 dna N/A GO:0000786 ... P68431 N/A
    964058 9ecp:F (1.91) BS01 dna N/A GO:0003677 ... P62805 N/A
    964059 9ecp:F (1.91) BS02 dna N/A GO:0003677 ... P62805 N/A
    964060 9ecp:G (1.91) BS01 dna N/A GO:0000786 ... Q7L7L0 N/A
    964061 9ecp:G (1.91) BS02 dna N/A GO:0000786 ... Q7L7L0 N/A
    964062 9ecp:H (1.91) BS01 dna N/A GO:0000786 ... O60814 N/A
    964063 9ecp:H (1.91) BS02 dna N/A GO:0000786 ... O60814 N/A
    964064 9ecs:A (0.99) BS01 ZN N/A N/A N/A N/A
    964065 9ecs:A (0.99) BS02 ZN N/A N/A N/A N/A
    964066 9ecs:A (0.99) BS03 RYO N/A N/A N/A N/A
    964067 9ecu:A (3.46) BS01 ANP N/A N/A P15056 41482524
    964068 9ecu:A (3.46) BS02 MG N/A N/A P15056 41482524
    964069 9ecu:B (3.46) BS01 A1BIS N/A GO:0000165 ... Q02750 41482524
    964070 9ecu:B (3.46) BS02 ANP N/A GO:0000165 ... Q02750 41482524
    964071 9ecu:B (3.46) BS03 MG N/A GO:0000165 ... Q02750 41482524
    964072 9ecv:A (2.79) BS01 peptide N/A GO:0000166 ... P28887 40042938
    964073 9ed0:A (2.8) BS01 rna N/A GO:0000028 ... P08865 40701149
    964074 9ed0:B (2.8) BS01 rna N/A GO:0002181 ... P61247 40701149
    964075 9ed0:C (2.8) BS01 rna N/A GO:0002181 ... P15880 40701149
    964076 9ed0:D (2.8) BS01 rna N/A GO:0001228 ... P23396 40701149
    964077 9ed0:E (2.8) BS01 rna N/A GO:0002181 ... P62701 40701149
    964078 9ed0:F (2.8) BS01 rna N/A GO:0002181 ... P46782 40701149
    964079 9ed0:G (2.8) BS01 rna N/A GO:0002181 ... P62753 40701149
    964080 9ed0:H (2.8) BS01 rna N/A GO:0002181 ... P62081 40701149
    964081 9ed0:I (2.8) BS01 rna N/A GO:0002181 ... P62241 40701149
    964082 9ed0:J (2.8) BS01 rna N/A GO:0002181 ... P46781 40701149
    964083 9ed0:K (2.8) BS01 rna N/A GO:0002181 ... P46783 40701149
    964084 9ed0:L (2.8) BS01 rna N/A GO:0002181 ... P62280 40701149
    964085 9ed0:M (2.8) BS01 rna N/A GO:0002181 ... P25398 40701149
    964086 9ed0:N (2.8) BS01 rna N/A GO:0000462 ... P62277 40701149
    964087 9ed0:O (2.8) BS01 rna N/A GO:0000028 ... P62263 40701149
    964088 9ed0:P (2.8) BS01 rna N/A GO:0000056 ... P62841 40701149
    964089 9ed0:Q (2.8) BS01 rna N/A GO:0000462 ... P62249 40701149
    964090 9ed0:R (2.8) BS01 rna N/A GO:0002181 ... P08708 40701149
    964091 9ed0:S (2.8) BS01 rna N/A GO:0002181 ... P62269 40701149
    964092 9ed0:T (2.8) BS01 rna N/A GO:0000028 ... P39019 40701149
    964093 9ed0:U (2.8) BS01 rna N/A GO:0002181 ... P60866 40701149
    964094 9ed0:W (2.8) BS01 rna N/A GO:0002181 ... P62244 40701149
    964095 9ed0:X (2.8) BS01 rna N/A GO:0002181 ... P62266 40701149
    964096 9ed0:Y (2.8) BS01 rna N/A GO:0002181 ... P62847 40701149
    964097 9ed0:Z (2.8) BS01 rna N/A GO:0002181 ... P62851 40701149
    964098 9ed0:a (2.8) BS01 rna N/A GO:0002181 ... P62854 40701149
    964099 9ed0:a (2.8) BS02 ZN N/A GO:0002181 ... P62854 40701149
    964100 9ed0:b (2.8) BS01 rna N/A GO:0002181 ... P42677 40701149
    964101 9ed0:c (2.8) BS01 rna N/A GO:0000028 ... P62857 40701149
    964102 9ed0:d (2.8) BS01 rna N/A GO:0002181 ... P62273 40701149
    964103 9ed0:d (2.8) BS02 ZN N/A GO:0002181 ... P62273 40701149
    964104 9ed0:e (2.8) BS01 rna N/A GO:0003735 ... P62861 40701149
    964105 9ed0:f (2.8) BS01 rna N/A GO:0002181 ... P62979 40701149
    964106 9ed0:f (2.8) BS02 ZN N/A GO:0002181 ... P62979 40701149
    964107 9ed0:g (2.8) BS01 rna N/A GO:0001891 ... P63244 40701149
    964108 9ed0:h (2.8) BS01 rna N/A GO:0000339 ... Q6PKG0 40701149
    964109 9ed1:E (3.5) BS01 CA N/A GO:0000785 ... P0DP29 40294255
    964110 9ed1:E (3.5) BS02 CA N/A GO:0000785 ... P0DP29 40294255
    964111 9ed1:E (3.5) BS03 CA N/A GO:0000785 ... P0DP29 40294255
    964112 9ed1:F (3.5) BS01 CA N/A GO:0000785 ... P0DP29 40294255
    964113 9ed1:F (3.5) BS02 CA N/A GO:0000785 ... P0DP29 40294255
    964114 9ed1:F (3.5) BS03 CA N/A GO:0000785 ... P0DP29 40294255
    964115 9ed1:G (3.5) BS01 CA N/A GO:0000785 ... P0DP29 40294255
    964116 9ed1:G (3.5) BS02 CA N/A GO:0000785 ... P0DP29 40294255
    964117 9ed1:G (3.5) BS03 CA N/A GO:0000785 ... P0DP29 40294255
    964118 9ed1:H (3.5) BS01 CA N/A GO:0000785 ... P0DP29 40294255
    964119 9ed1:H (3.5) BS02 CA N/A GO:0000785 ... P0DP29 40294255
    964120 9ed1:H (3.5) BS03 CA N/A GO:0000785 ... P0DP29 40294255
    964121 9ed2:A (2.72) BS01 peptide N/A GO:0000166 ... P28887 40042938
    964122 9ed3:A (2.52) BS01 dna N/A GO:0000086 ... P25454 39898551
    964123 9ed3:A (2.52) BS02 ADP N/A GO:0000086 ... P25454 39898551
    964124 9ed3:A (2.52) BS03 AF3 N/A GO:0000086 ... P25454 39898551
    964125 9ed3:B (2.52) BS01 dna N/A GO:0000086 ... P25454 39898551
    964126 9ed3:B (2.52) BS02 ADP N/A GO:0000086 ... P25454 39898551
    964127 9ed3:B (2.52) BS03 ADP N/A GO:0000086 ... P25454 39898551
    964128 9ed3:B (2.52) BS04 AF3 N/A GO:0000086 ... P25454 39898551
    964129 9ed3:C (2.52) BS01 dna N/A GO:0000086 ... P25454 39898551
    964130 9ed3:C (2.52) BS02 ADP N/A GO:0000086 ... P25454 39898551
    964131 9ed3:C (2.52) BS03 AF3 N/A GO:0000086 ... P25454 39898551
    964132 9ed3:C (2.52) BS04 ADP N/A GO:0000086 ... P25454 39898551
    964133 9ed3:D (2.52) BS01 dna N/A GO:0000086 ... P25454 39898551
    964134 9ed3:D (2.52) BS02 ADP N/A GO:0000086 ... P25454 39898551
    964135 9ed3:D (2.52) BS03 ADP N/A GO:0000086 ... P25454 39898551
    964136 9ed3:D (2.52) BS04 AF3 N/A GO:0000086 ... P25454 39898551
    964137 9ed3:E (2.52) BS01 dna N/A GO:0000086 ... P25454 39898551
    964138 9ed3:E (2.52) BS02 ADP N/A GO:0000086 ... P25454 39898551
    964139 9ed3:E (2.52) BS03 ADP N/A GO:0000086 ... P25454 39898551
    964140 9ed3:E (2.52) BS04 AF3 N/A GO:0000086 ... P25454 39898551
    964141 9ed3:F (2.52) BS01 dna N/A GO:0000086 ... P25454 39898551
    964142 9ed3:F (2.52) BS02 ADP N/A GO:0000086 ... P25454 39898551
    964143 9ed3:F (2.52) BS03 ADP N/A GO:0000086 ... P25454 39898551
    964144 9ed3:F (2.52) BS04 AF3 N/A GO:0000086 ... P25454 39898551
    964145 9ed4:A (3.23) BS01 ANP N/A GO:0000139 ... P42345 40963021
    964146 9ed4:A (3.23) BS02 IHP N/A GO:0000139 ... P42345 40963021
    964147 9ed4:C (3.23) BS01 peptide N/A GO:0001558 ... Q8N122 40963021
    964148 9ed4:D (3.23) BS01 GTP N/A GO:0003924 ... Q7L523 40963021
    964149 9ed4:E (3.23) BS01 GDP N/A GO:0000287 ... Q9HB90 40963021
    964150 9ed4:L (3.23) BS01 GSP N/A GO:0000139 ... Q15382 40963021
    964151 9ed4:L (3.23) BS02 MG N/A GO:0000139 ... Q15382 40963021
    964152 9ed4:N (3.23) BS01 GSP N/A GO:0000139 ... Q15382 40963021
    964153 9ed4:N (3.23) BS02 MG N/A GO:0000139 ... Q15382 40963021
    964154 9ed4:O (3.23) BS01 ANP N/A GO:0000139 ... P42345 40963021
    964155 9ed4:O (3.23) BS02 IHP N/A GO:0000139 ... P42345 40963021
    964156 9ed4:P (3.23) BS01 GTP N/A GO:0003924 ... Q7L523 40963021
    964157 9ed4:U (3.23) BS01 peptide N/A GO:0001558 ... Q8N122 40963021
    964158 9ed4:V (3.23) BS01 GDP N/A GO:0000287 ... Q9HB90 40963021
    964159 9ed6:B (3.98) BS01 GTP N/A GO:0003924 ... Q7L523 40963021
    964160 9ed6:C (3.98) BS01 GDP N/A GO:0000287 ... Q9HB90 40963021
    964161 9ed7:A (3.16) BS01 ANP N/A GO:0000139 ... P42345 40963021
    964162 9ed7:A (3.16) BS02 IHP N/A GO:0000139 ... P42345 40963021
    964163 9ed7:L (3.16) BS01 GSP N/A GO:0000139 ... Q15382 40963021
    964164 9ed8:A (3.61) BS01 ANP N/A GO:0000139 ... P42345 40963021
    964165 9ed8:A (3.61) BS02 IHP N/A GO:0000139 ... P42345 40963021
    964166 9ed8:L (3.61) BS01 GSP N/A GO:0000139 ... Q15382 40963021
    964167 9ed8:L (3.61) BS02 MG N/A GO:0000139 ... Q15382 40963021
    964168 9ed9:A (2.95) BS01 rna N/A GO:0003676 ... Q99ZW2 40593576
    964169 9ed9:A (2.95) BS02 dna N/A GO:0003676 ... Q99ZW2 40593576
    964170 9ed9:A (2.95) BS03 dna N/A GO:0003676 ... Q99ZW2 40593576
    964171 9ed9:A (2.95) BS04 dna N/A GO:0003676 ... Q99ZW2 40593576
    964172 9eda:A (2.88) BS01 rna N/A GO:0003676 ... Q99ZW2 40593576
    964173 9eda:A (2.88) BS02 dna N/A GO:0003676 ... Q99ZW2 40593576
    964174 9eda:A (2.88) BS03 dna N/A GO:0003676 ... Q99ZW2 40593576
    964175 9eda:A (2.88) BS04 dna N/A GO:0003676 ... Q99ZW2 40593576
    964176 9edb:A (3.1) BS01 rna N/A GO:0003676 ... Q99ZW2 40593576
    964177 9edb:A (3.1) BS02 dna N/A GO:0003676 ... Q99ZW2 40593576
    964178 9edb:A (3.1) BS03 dna N/A GO:0003676 ... Q99ZW2 40593576
    964179 9edc:A (4.18) BS01 ATP N/A GO:0000287 ... P17612 40241376
    964180 9edd:A (6.3) BS01 ATP N/A GO:0000287 ... P17612 40241376
    964181 9ede:A (5.9) BS01 ATP N/A GO:0000287 ... P17612 40241376
    964182 9edg:A (1.75) BS01 A1BIA N/A GO:0005576 ... P22629 N/A
    964183 9edh:A (1.72) BS01 A1BIA N/A GO:0005576 ... P22629 N/A
    964184 9edi:A (1.5) BS01 A1BIA N/A GO:0005576 ... P22629 N/A
    964185 9edk:A (1.45) BS01 A1BIA N/A GO:0005576 ... P22629 N/A
    964186 9edl:A (1.96) BS01 ZN N/A N/A Q5NHF0 39697679
    964187 9edl:B (1.96) BS01 ZN N/A N/A Q5NHF0 39697679
    964188 9edl:B (1.96) BS02 ZN N/A N/A Q5NHF0 39697679
    964189 9edr:A (3.8) BS01 GTP N/A GO:0000226 ... P02550 41461644
    964190 9edr:B (3.8) BS01 GDP N/A GO:0000226 ... P02554 41461644
    964191 9edr:G (3.8) BS01 GTP N/A GO:0003674 ... P39110 41461644
    964192 9eds:A (3.8) BS01 GTP N/A GO:0000226 ... P02550 41461644
    964193 9eds:B (3.8) BS01 GDP N/A GO:0000226 ... P02554 41461644
    964194 9eds:G (3.8) BS01 GTP N/A GO:0003674 ... P39110 41461644
    964195 9edt:A (3.7) BS01 GTP N/A GO:0000226 ... P02550 41461644
    964196 9edt:B (3.7) BS01 GDP N/A GO:0000226 ... P02554 41461644
    964197 9edt:G (3.7) BS01 GTP N/A GO:0003674 ... P39110 41461644
    964198 9edu:A (1.85) BS01 A1BIA N/A GO:0005576 ... P22629 N/A
    964199 9edv:A (2.42) BS01 A1BIQ N/A GO:0004672 ... A0A1D8PKB4 40038303
    964200 9edw:A (2.33) BS01 A1BIP N/A GO:0004672 ... A0A1D8PKB4 40038303

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).