SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    964801 9ehd:A (1.59) BS01 peptide N/A N/A Q06124 N/A
    964802 9ehf:A (2.6) BS01 rna N/A N/A A0Q5Y3 40613710
    964803 9ehf:A (2.6) BS02 dna N/A N/A A0Q5Y3 40613710
    964804 9ehf:A (2.6) BS03 dna N/A N/A A0Q5Y3 40613710
    964805 9ehf:A (2.6) BS04 dna N/A N/A A0Q5Y3 40613710
    964806 9ehg:A (3.0) BS01 rna N/A N/A A0Q5Y3 40613710
    964807 9ehg:A (3.0) BS02 dna N/A N/A A0Q5Y3 40613710
    964808 9ehg:A (3.0) BS03 dna N/A N/A A0Q5Y3 40613710
    964809 9ehg:A (3.0) BS04 dna N/A N/A A0Q5Y3 40613710
    964810 9ehh:A (2.9) BS01 rna N/A N/A A0Q5Y3 40613710
    964811 9ehh:A (2.9) BS02 dna N/A N/A A0Q5Y3 40613710
    964812 9ehh:A (2.9) BS03 dna N/A N/A A0Q5Y3 40613710
    964813 9ehi:A (2.6) BS01 peptide N/A N/A Q03111 40339582
    964814 9ehi:B (2.6) BS01 peptide N/A N/A Q03111 40339582
    964815 9ehi:C (2.6) BS01 peptide N/A N/A Q03111 40339582
    964816 9ehi:D (2.6) BS01 peptide N/A N/A Q03111 40339582
    964817 9ehi:D (2.6) BS02 peptide N/A N/A Q03111 40339582
    964818 9ehi:E (2.6) BS01 peptide N/A N/A Q03111 40339582
    964819 9ehi:F (2.6) BS01 peptide N/A N/A Q03111 40339582
    964820 9ehi:F (2.6) BS02 peptide N/A N/A Q03111 40339582
    964821 9ehi:G (2.6) BS01 peptide N/A N/A Q03111 40339582
    964822 9ehi:H (2.6) BS01 peptide N/A N/A Q03111 40339582
    964823 9ehi:I (2.6) BS01 peptide N/A N/A Q03111 40339582
    964824 9ehi:J (2.6) BS01 peptide N/A N/A Q03111 40339582
    964825 9ehi:K (2.6) BS01 peptide N/A N/A Q03111 40339582
    964826 9ehi:K (2.6) BS02 peptide N/A N/A Q03111 40339582
    964827 9ehi:L (2.6) BS01 peptide N/A N/A Q03111 40339582
    964828 9ehi:M (2.6) BS01 peptide N/A N/A Q03111 40339582
    964829 9ehi:M (2.6) BS02 peptide N/A N/A Q03111 40339582
    964830 9ehi:N (2.6) BS01 peptide N/A N/A Q03111 40339582
    964831 9ehi:O (2.6) BS01 peptide N/A N/A Q03111 40339582
    964832 9ehi:P (2.6) BS01 peptide N/A N/A Q03111 40339582
    964833 9ehl:A (3.9) BS01 BMA N/A GO:0019031 ... Q2N0S5 40378041
    964834 9ehl:C (3.9) BS01 BMA N/A GO:0019031 ... Q2N0S5 40378041
    964835 9ehl:H (3.9) BS01 MAN N/A N/A N/A 40378041
    964836 9ehl:J (3.9) BS01 MAN N/A N/A N/A 40378041
    964837 9ehl:L (3.9) BS01 BMA N/A N/A N/A 40378041
    964838 9ehl:P (3.9) BS01 MAN N/A N/A N/A 40378041
    964839 9ehl:Q (3.9) BS01 BMA N/A N/A N/A 40378041
    964840 9ehl:Q (3.9) BS02 MAN N/A N/A N/A 40378041
    964841 9ehl:R (3.9) BS01 MAN N/A N/A N/A 40378041
    964842 9ehl:R (3.9) BS02 MAN N/A N/A N/A 40378041
    964843 9ehm:A (4.2) BS01 MAN N/A GO:0019031 ... Q2N0S5 40378041
    964844 9ehm:B (4.2) BS01 MAN N/A GO:0019031 ... Q2N0S5 40378041
    964845 9ehm:H (4.2) BS01 MAN N/A N/A N/A 40378041
    964846 9ehm:Q (4.2) BS01 MAN N/A N/A N/A 40378041
    964847 9ehm:R (4.2) BS01 MAN N/A N/A N/A 40378041
    964848 9ehm:R (4.2) BS02 BMA N/A N/A N/A 40378041
    964849 9ehr:A (2.9) BS01 rna N/A N/A A0Q5Y3 40613710
    964850 9ehr:A (2.9) BS02 dna N/A N/A A0Q5Y3 40613710
    964851 9ehr:A (2.9) BS03 dna N/A N/A A0Q5Y3 40613710
    964852 9ehs:R (3.2) BS01 A1BII N/A GO:0001609 ... P0DMS8 40825947
    964853 9ehu:A (1.42) BS01 MG N/A GO:0019031 ... A0A9Y2E427 39713338
    964854 9ehw:A (2.98) BS01 dna N/A N/A A0Q5Y3 40613710
    964855 9ehw:A (2.98) BS02 dna N/A N/A A0Q5Y3 40613710
    964856 9ehw:A (2.98) BS03 rna N/A N/A A0Q5Y3 40613710
    964857 9ehx:A (2.9) BS01 dna N/A N/A A0Q5Y3 40613710
    964858 9ehx:A (2.9) BS02 dna N/A N/A A0Q5Y3 40613710
    964859 9ehx:A (2.9) BS03 rna N/A N/A A0Q5Y3 40613710
    964860 9ehx:A (2.9) BS04 dna N/A N/A A0Q5Y3 40613710
    964861 9ehy:A (1.57) BS01 A1BIM N/A GO:0008800 ... A7Y407 40377322
    964862 9ehy:B (1.57) BS01 A1BIM N/A GO:0008800 ... A7Y407 40377322
    964863 9ehy:B (1.57) BS02 CAZ N/A GO:0008800 ... A7Y407 40377322
    964864 9ehz:A (2.6) BS01 dna N/A GO:0000287 ... P24928 40624164
    964865 9ehz:A (2.6) BS02 rna N/A GO:0000287 ... P24928 40624164
    964866 9ehz:A (2.6) BS03 dna N/A GO:0000287 ... P24928 40624164
    964867 9ehz:A (2.6) BS04 MG N/A GO:0000287 ... P24928 40624164
    964868 9ehz:A (2.6) BS05 ZN N/A GO:0000287 ... P24928 40624164
    964869 9ehz:A (2.6) BS06 ZN N/A GO:0000287 ... P24928 40624164
    964870 9ehz:B (2.6) BS01 dna N/A GO:0000781 ... P30876 40624164
    964871 9ehz:B (2.6) BS02 rna N/A GO:0000781 ... P30876 40624164
    964872 9ehz:B (2.6) BS03 dna N/A GO:0000781 ... P30876 40624164
    964873 9ehz:B (2.6) BS04 ZN N/A GO:0000781 ... P30876 40624164
    964874 9ehz:C (2.6) BS01 ZN N/A GO:0003677 ... P19387 40624164
    964875 9ehz:I (2.6) BS01 ZN N/A GO:0001193 ... P36954 40624164
    964876 9ehz:I (2.6) BS02 ZN N/A GO:0001193 ... P36954 40624164
    964877 9ehz:J (2.6) BS01 ZN N/A GO:0003677 ... P62875 40624164
    964878 9ehz:L (2.6) BS01 ZN N/A GO:0001650 ... P53803 40624164
    964879 9ei1:A (3.2) BS01 dna N/A GO:0000287 ... P24928 40624164
    964880 9ei1:A (3.2) BS02 rna N/A GO:0000287 ... P24928 40624164
    964881 9ei1:A (3.2) BS03 dna N/A GO:0000287 ... P24928 40624164
    964882 9ei1:A (3.2) BS04 ZN N/A GO:0000287 ... P24928 40624164
    964883 9ei1:A (3.2) BS05 ZN N/A GO:0000287 ... P24928 40624164
    964884 9ei1:A (3.2) BS06 MG N/A GO:0000287 ... P24928 40624164
    964885 9ei1:B (3.2) BS01 dna N/A GO:0000781 ... P30876 40624164
    964886 9ei1:B (3.2) BS02 rna N/A GO:0000781 ... P30876 40624164
    964887 9ei1:B (3.2) BS03 dna N/A GO:0000781 ... P30876 40624164
    964888 9ei1:B (3.2) BS04 ZN N/A GO:0000781 ... P30876 40624164
    964889 9ei1:C (3.2) BS01 ZN N/A GO:0003677 ... P19387 40624164
    964890 9ei1:I (3.2) BS01 ZN N/A GO:0001193 ... P36954 40624164
    964891 9ei1:I (3.2) BS02 ZN N/A GO:0001193 ... P36954 40624164
    964892 9ei1:J (3.2) BS01 ZN N/A GO:0003677 ... P62875 40624164
    964893 9ei1:L (3.2) BS01 ZN N/A GO:0001650 ... P53803 40624164
    964894 9ei1:U (3.2) BS01 dna N/A GO:0000278 ... O94762 40624164
    964895 9ei1:U (3.2) BS02 dna N/A GO:0000278 ... O94762 40624164
    964896 9ei3:A (3.2) BS01 dna N/A GO:0000287 ... P24928 40624164
    964897 9ei3:A (3.2) BS02 rna N/A GO:0000287 ... P24928 40624164
    964898 9ei3:A (3.2) BS03 dna N/A GO:0000287 ... P24928 40624164
    964899 9ei3:A (3.2) BS04 ZN N/A GO:0000287 ... P24928 40624164
    964900 9ei3:A (3.2) BS05 ZN N/A GO:0000287 ... P24928 40624164
    964901 9ei3:A (3.2) BS06 MG N/A GO:0000287 ... P24928 40624164
    964902 9ei3:B (3.2) BS01 dna N/A GO:0000781 ... P30876 40624164
    964903 9ei3:B (3.2) BS02 rna N/A GO:0000781 ... P30876 40624164
    964904 9ei3:B (3.2) BS03 dna N/A GO:0000781 ... P30876 40624164
    964905 9ei3:B (3.2) BS04 ZN N/A GO:0000781 ... P30876 40624164
    964906 9ei3:C (3.2) BS01 ZN N/A GO:0003677 ... P19387 40624164
    964907 9ei3:I (3.2) BS01 ZN N/A GO:0001193 ... P36954 40624164
    964908 9ei3:I (3.2) BS02 ZN N/A GO:0001193 ... P36954 40624164
    964909 9ei3:J (3.2) BS01 ZN N/A GO:0003677 ... P62875 40624164
    964910 9ei3:L (3.2) BS01 ZN N/A GO:0001650 ... P53803 40624164
    964911 9ei3:U (3.2) BS01 dna N/A GO:0000278 ... O94762 40624164
    964912 9ei3:U (3.2) BS02 ANP N/A GO:0000278 ... O94762 40624164
    964913 9ei4:A (3.7) BS01 dna N/A GO:0000287 ... P24928 40624164
    964914 9ei4:A (3.7) BS02 rna N/A GO:0000287 ... P24928 40624164
    964915 9ei4:A (3.7) BS03 dna N/A GO:0000287 ... P24928 40624164
    964916 9ei4:A (3.7) BS04 ZN N/A GO:0000287 ... P24928 40624164
    964917 9ei4:A (3.7) BS05 ZN N/A GO:0000287 ... P24928 40624164
    964918 9ei4:A (3.7) BS06 MG N/A GO:0000287 ... P24928 40624164
    964919 9ei4:B (3.7) BS01 dna N/A GO:0000781 ... P30876 40624164
    964920 9ei4:B (3.7) BS02 rna N/A GO:0000781 ... P30876 40624164
    964921 9ei4:B (3.7) BS03 dna N/A GO:0000781 ... P30876 40624164
    964922 9ei4:B (3.7) BS04 ZN N/A GO:0000781 ... P30876 40624164
    964923 9ei4:C (3.7) BS01 ZN N/A GO:0003677 ... P19387 40624164
    964924 9ei4:I (3.7) BS01 ZN N/A GO:0001193 ... P36954 40624164
    964925 9ei4:I (3.7) BS02 ZN N/A GO:0001193 ... P36954 40624164
    964926 9ei4:J (3.7) BS01 ZN N/A GO:0003677 ... P62875 40624164
    964927 9ei4:L (3.7) BS01 ZN N/A GO:0001650 ... P53803 40624164
    964928 9ei4:U (3.7) BS01 dna N/A GO:0000278 ... O94762 40624164
    964929 9ei4:U (3.7) BS02 ADP N/A GO:0000278 ... O94762 40624164
    964930 9ei6:A (1.44) BS01 AKG N/A GO:0005506 ... C7BKM7 40787846
    964931 9ei6:A (1.44) BS02 FE N/A GO:0005506 ... C7BKM7 40787846
    964932 9ei7:A (1.48) BS01 A1BIK N/A GO:0005506 ... C7BKM7 40787846
    964933 9ei7:A (1.48) BS02 V N/A GO:0005506 ... C7BKM7 40787846
    964934 9eia:A (1.74) BS01 4EY N/A GO:0050043 ... E8QWZ4 39651260
    964935 9eia:B (1.74) BS01 4EY N/A GO:0050043 ... E8QWZ4 39651260
    964936 9eib:A (1.67) BS01 Y65 N/A N/A N/A 40307559
    964937 9eib:B (1.67) BS01 Y65 N/A N/A N/A 40307559
    964938 9eid:A (1.38) BS01 UCU N/A GO:0050043 ... E8QWZ4 39651260
    964939 9eid:A (1.38) BS02 4EY N/A GO:0050043 ... E8QWZ4 39651260
    964940 9eif:A (1.65) BS01 4EY N/A GO:0050043 ... E8QWZ4 39651260
    964941 9eif:A (1.65) BS02 VAD N/A GO:0050043 ... E8QWZ4 39651260
    964942 9eif:B (1.65) BS01 4EY N/A GO:0050043 ... E8QWZ4 39651260
    964943 9eif:B (1.65) BS02 VAD N/A GO:0050043 ... E8QWZ4 39651260
    964944 9eik:A (1.25) BS01 peptide N/A N/A Q06124 N/A
    964945 9eil:A (3.2) BS01 dna N/A GO:0000786 ... P84233 40147774
    964946 9eil:A (3.2) BS02 dna N/A GO:0000786 ... P84233 40147774
    964947 9eil:B (3.2) BS01 dna N/A GO:0000786 ... P62799 40147774
    964948 9eil:B (3.2) BS02 dna N/A GO:0000786 ... P62799 40147774
    964949 9eil:C (3.2) BS01 dna N/A GO:0000786 ... P06897 40147774
    964950 9eil:C (3.2) BS02 dna N/A GO:0000786 ... P06897 40147774
    964951 9eil:D (3.2) BS01 dna N/A GO:0000786 ... P02281 40147774
    964952 9eil:D (3.2) BS02 dna N/A GO:0000786 ... P02281 40147774
    964953 9eil:E (3.2) BS01 dna N/A GO:0000786 ... P84233 40147774
    964954 9eil:E (3.2) BS02 dna N/A GO:0000786 ... P84233 40147774
    964955 9eil:F (3.2) BS01 dna N/A GO:0000786 ... P62799 40147774
    964956 9eil:F (3.2) BS02 dna N/A GO:0000786 ... P62799 40147774
    964957 9eil:G (3.2) BS01 dna N/A GO:0000786 ... P06897 40147774
    964958 9eil:G (3.2) BS02 dna N/A GO:0000786 ... P06897 40147774
    964959 9eil:H (3.2) BS01 dna N/A GO:0000786 ... P02281 40147774
    964960 9eil:H (3.2) BS02 dna N/A GO:0000786 ... P02281 40147774
    964961 9eil:K (3.2) BS01 ZSL N/A GO:0000122 ... Q8N6T7 40147774
    964962 9eil:K (3.2) BS02 ZN N/A GO:0000122 ... Q8N6T7 40147774
    964963 9eio:E (3.62) BS01 CA N/A GO:0000785 ... P0DP29 40246884
    964964 9eio:E (3.62) BS02 CA N/A GO:0000785 ... P0DP29 40246884
    964965 9eio:F (3.62) BS01 CA N/A GO:0000785 ... P0DP29 40246884
    964966 9eio:F (3.62) BS02 CA N/A GO:0000785 ... P0DP29 40246884
    964967 9eio:G (3.62) BS01 CA N/A GO:0000785 ... P0DP29 40246884
    964968 9eio:G (3.62) BS02 CA N/A GO:0000785 ... P0DP29 40246884
    964969 9eio:H (3.62) BS01 CA N/A GO:0000785 ... P0DP29 40246884
    964970 9eio:H (3.62) BS02 CA N/A GO:0000785 ... P0DP29 40246884
    964971 9eis:A (2.8) BS01 AKG N/A N/A K9GJX7 40052306
    964972 9eis:A (2.8) BS02 MN N/A N/A K9GJX7 40052306
    964973 9eis:B (2.8) BS01 MN N/A N/A K9GJX7 40052306
    964974 9eis:C (2.8) BS01 AKG N/A N/A K9GJX7 40052306
    964975 9eis:C (2.8) BS02 MN N/A N/A K9GJX7 40052306
    964976 9eis:D (2.8) BS01 MN N/A N/A K9GJX7 40052306
    964977 9eit:A (3.35) BS01 CA N/A GO:0004308 ... A1ILL9 40750617
    964978 9eit:D (3.35) BS01 CA N/A GO:0004308 ... A1ILL9 40750617
    964979 9eit:G (3.35) BS01 CA N/A GO:0004308 ... A1ILL9 40750617
    964980 9eit:P (3.35) BS01 CA N/A GO:0004308 ... A1ILL9 40750617
    964981 9eiv:A (1.92) BS01 MN N/A GO:0000287 ... P07379 40120576
    964982 9eiv:A (1.92) BS02 MN N/A GO:0000287 ... P07379 40120576
    964983 9eiv:A (1.92) BS03 PGA N/A GO:0000287 ... P07379 40120576
    964984 9eiv:A (1.92) BS04 GDP N/A GO:0000287 ... P07379 40120576
    964985 9eiw:A (2.2) BS01 MN N/A GO:0000287 ... P07379 40120576
    964986 9eiw:A (2.2) BS02 MN N/A GO:0000287 ... P07379 40120576
    964987 9eiw:A (2.2) BS03 PGA N/A GO:0000287 ... P07379 40120576
    964988 9eiw:A (2.2) BS04 GDP N/A GO:0000287 ... P07379 40120576
    964989 9eix:A (2.42) BS01 MN N/A GO:0000287 ... P07379 40120576
    964990 9eix:A (2.42) BS02 MN N/A GO:0000287 ... P07379 40120576
    964991 9eix:A (2.42) BS03 PGA N/A GO:0000287 ... P07379 40120576
    964992 9eix:A (2.42) BS04 GDP N/A GO:0000287 ... P07379 40120576
    964993 9eiy:A (2.22) BS01 MN N/A GO:0000287 ... P07379 40120576
    964994 9eiy:A (2.22) BS02 MN N/A GO:0000287 ... P07379 40120576
    964995 9eiy:A (2.22) BS03 MN N/A GO:0000287 ... P07379 40120576
    964996 9eiy:A (2.22) BS04 PGA N/A GO:0000287 ... P07379 40120576
    964997 9eiy:A (2.22) BS05 GDP N/A GO:0000287 ... P07379 40120576
    964998 9eiz:A (2.04) BS01 MN N/A GO:0000287 ... P07379 40120576
    964999 9eiz:A (2.04) BS02 MN N/A GO:0000287 ... P07379 40120576
    965000 9eiz:A (2.04) BS03 MN N/A GO:0000287 ... P07379 40120576

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).